cbr-mir-57
| absolute | AF16 |
| cbr-mir-57 5arm | 37 |
| cbr-mir-57 3arm | 1 |
| normalized | AF16 |
| cbr-mir-57 5arm | 0.096 |
| cbr-mir-57 3arm | 0.003 |
sblock12 (miRBase cbr-mir-57) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-57 | 0.003 | no | no | 0.48/0.50 | 20/25/0.90 | 0.0 0.0 | 0.0 0.0 | 31 1 | 0 0 | 1 1 | 0 0 | 14 17 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.25 0.20 | 2 2 | 38 | 1 | 2 | 0 |
| reads | miRBase family seed | ||
| seed | -----------------------------------ACCCUGU------------------------------------------------------------------------------------------- | 36 | miR-57 |
| seed | ----------------------------------------------------------------------------------CGAGCUA-------------------------------------------- | 1 | novel |
| seed | ---------------------------------------UGUAGAU--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-57 | ----------------------------------TACCCTGTAGATCGAGCTGTGTG-------T-------------------------------------------------------------------- | 24 | 31 |
| ----------------------------------TACCCTGTAGATCGAGCTGTGTG-------TT------------------------------------------------------------------- | 25 | 4 | |
| --------------------------------------CTGTAGATCGAGCTGTGTG-------TT------------------------------------------------------------------- | 21 | 1 | |
| ----------------------------------TACCCTGTAGATCGAGCTGTGT----------------------------------------------------------------------------- | 22 | 1 | |
| ---------------------------------------------------------------------------------ACGAGCTAGACTACTAGGTG-------------------------------- | 20 | 1 | |
| cbriggsae | --------------------GCTCTGAGTTCGTCTACCCTGTAGATCGAGCTGTGTG-------TTCTGAAGT-ATCATACACGAGCTAGACTACTAGGTGAACGATGGAA---TGGAGCA------------ | ||
| cremanei | ACGTAAGTTTGAATATCTCATGACTGTTTTCGTCTACCCTGTAGATCGAGCTGTGTG-------TTTTGAAGTGTTCATACACAAGCTAGACTGCAAGGTGAACGACAAAA---TGAGAGAGCTTCTTTATGT | ||
| celegans | -------GTATGTGAACTCATCGACATGCTCGTCTACCCTGTAGATCGAGCTGTGTG--------TTTGAAACAATCATACACGAGCTAGACTACAAGGTGCACGAACAAA---CCGAAGATTTATGAATAT- | ||
| cbrenneri | ----------------------------------TACCCTGTAGATAGAGCTGTGTG-------TTTGGAATATACCGTACACAAGCTAGACTACAAGGTGAACGACTTAT--------GAGCTTTAATTTTA | ||
| cjaponica | -------GTTGATCTGCTCGATCCGAACATCGTCTACCCTGTAGATCGAGCTGTGTGTGTGCTATTTCGAAATGATAGAACACACGCTAGACTTCAGGGTGAACGAGATGGATTTGAGAGAAGGTTGGC---- | ||
| ************ ********** * *** **** ******** * **** **** * | |||
| +++++ +++++++++++++++++++++++++++++++++++++ +++++++++ +++++++++++++++++++++++++++++++++++++ +++++++ +++++ | NM_001011629 | ||
| ----- ------------------------------------- --------- ------------------------------------- ------- ----- | NM_001791 | ||
| ----- ------------------------------------- --------- ------------------------------------- ------- ----- | NM_001039802 | ||
| ----- ------------------------------------- --------- ------------------------------------- ------- ----- | NM_001007799 | ||
| cbriggsae | (((((...((((((((((..((((.((.((((.(((( (..(((... .))).))))))))).))))))..))))...)))))). .))))). | 1.000 -33.90 | |
| cremanei | (((((((...(((..((((((.....((.((((.((((.(((((.((.((((.(((( (..(((.....))).))))))))).))))))).)))).)))).)).) )))))....)))))))))) | 0.987 -37.60 | |
| celegans | ....(((((.((.(((...((.((((.((((.(((((.((.((((.(((( (.(((.....))).))))))))).))))))).)))).)))).)).. .))).)))))))...... | 0.972 -35.50 | |
| cbrenneri | ((((.(((((....((((.(((( (.(((......))).)))))))))...))))).)))).......... .............. | 0.887 -23.10 | |
| cjaponica | ((..((((.(((((((((....((((.(((((((.((.((.(((.((((((...(((((.......))))).))))))))).)))).))))))).))))..)))))).)))...))))..)) | 1.000 -51.90 |
| cbriggsae | chromosome:chrII:5768347:5768436:-1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_001791|CDC42 ## Opposite_strand|Intronic_coding|NM_001007799|Cir ## {Repeats: no} ## {MIR: cbr-mir-57} |
| cremanei | chromosome:chrUn:19014083:19014205:-1 | Opposite_strand|Intronic_coding|NM_001009825 |
| celegans | chromosome:chrII:7850426:7850539:-1 | intergenic ## {MIR: cel-mir-57} |
| cbrenneri | chromosome:chrUn:125714261:125714344:-1 | intergenic |
| cjaponica | chromosome:chrUn:29105267:29105388:-1 | intergenic |
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