cbr-mir-58
| absolute | AF16 |
| cbr-mir-58 5arm | 10 |
| cbr-mir-58 3arm | 471 |
| normalized | AF16 |
| cbr-mir-58 5arm | 0.026 |
| cbr-mir-58 3arm | 1.228 |
sblock40 (miRBase cbr-mir-58) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-58 | 0.001 | no | no | 0.43/0.53 | 18/23/0.29 | 0.3 0.0 | 0.0 0.0 | 9 320 | 0 0 | 1 1 | 0 0 | 6 7 | 13 12 | 5arm 3arm | 1 1 | nd nd | 0.26 0.21 | 3 3 | 481 | 1 | 2 | -1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------GAGAUCG------------------------------------- | 462 | miR-58 |
| seed | ---------------------------CCCUACU---------------------------------------------------------------------------------------- | 6 | novel |
| seed | ----------------------------------------------------------------------------------UCG-UUCA-------------------------------- | 5 | novel |
| seed | --------------------------GCCCUAC----------------------------------------------------------------------------------------- | 4 | novel |
| seed | -------------------------------------------------------------------------------AGAUCG-U----------------------------------- | 2 | novel |
| seed | -----------------------------------------------------------------------------UGAGAUC-------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGC------------------------ | 19 | 320 | |
| cbr-miR-58 | -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGCAAT--------------------- | 22 | 119 |
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGG------------------------- | 18 | 17 | |
| --------------------------GCCCTACTATTCGCATCTCATC-------------------------------------------------------------------------- | 22 | 6 | |
| ---------------------------------------------------------------------------------ATCG-TTCA-GTACGGCAAT--------------------- | 18 | 4 | |
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGCAA---------------------- | 21 | 4 | |
| -------------------------TGCCCTACTATTCGCATCTCATC-------------------------------------------------------------------------- | 23 | 3 | |
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGCA----------------------- | 20 | 2 | |
| ----------------------------------------------------------------------------ATGAGATCG-TTCA-GTACGGCAAT--------------------- | 23 | 1 | |
| -------------------------TGCCCTACTATTCGCATCTCAT--------------------------------------------------------------------------- | 22 | 1 | |
| ------------------------------------------------------------------------------GAGATCG-TTCA-GTACGGCAAT--------------------- | 21 | 1 | |
| ----------------------------------------------------------------------------ATGAGATCG-TTCA-GTACGG------------------------- | 19 | 1 | |
| ------------------------------------------------------------------------------GAGATCG-TTCA-GTACGGCA----------------------- | 19 | 1 | |
| ---------------------------------------------------------------------------------ATCG-TTCA-GTACGGCAATG-------------------- | 19 | 1 | |
| cbriggsae | -------------------ATCCATTGCCCTACTATTCGCATCTCATCACTCCAGTATATATATATATATATAAGGATGAGATCG-TTCA-GTACGGCAATGGAA----------------- | ||
| cremanei | --CGTTTGATGCTCGCCATATCCATTGCCCTACTATTCGCATCTCATCACTTCC-TCCA-GTA-----ATATAAGGATGAGATCG-TTCA-GTACGGCAATGGAAAGAGCTATATAACG--- | ||
| celegans | ----------GCTCGTCATATCCATTGCCCTACTCTTCGCATCTCATCACTTCG-TCCA-ATA-----CCATAGGGATGAGATCG-TTCA-GTACGGCAATGGACTGAGC------------ | ||
| cbrenneri | CCCGTCTGATGCTCGTCATATCCATTGCCCTACTCTTCGCATCTCATCACTTCG-TCCG-CCA-----ATATAAGGATGAGATCG-TTCA-GTACGGCAATGGAAAGAGCTATAACACGGTG | ||
| cjaponica | ----------GGTTACAATATGA-----------TTTCACGTGAAAATTCTGCA-AACA-CCAGTTATTTTGAGAAATGAGATCG-TTCACGTGTCGCC----------------------- | ||
| ppacificus | ----GTCTGAACTTGGAGGGCGAATTTC---GTTTTTCGA-------------C-TACA-AGAAATATGGAGAGAGACGAGATCGATTCAAGCTTGGAT----------------------- | ||
| *** * * * ******* **** * * | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_007735 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001003090 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000393 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_062161 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_053304 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_031362 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_201478 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000088 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000091 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_214509 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001105289 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001011005 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001090075 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_203889 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_064264 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_033150 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_131292 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_031365 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_007737 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_001844 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001123230 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001029258 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_001107003 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_031163 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_009152 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_067877 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001029256 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000393 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001081764 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001034039 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001087791 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_001069271 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_134696 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_007743 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_033150 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001844 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_199214 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_065566 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001113224 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001122918 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001124177 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001001135 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_012133 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_199446 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001007831 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001014152 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_135345 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_164797 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000293 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_067903 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001082301 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001031835 | ||
| cbriggsae | .(((((((((.((((...((.((((((((.((...(((((((....))))))).)))))))))))) ...) ))).))))))))). | 1.000 -36.00 | |
| cremanei | ((((....((((......(((((((((.((((...((.((((((((.(((.. .... ... ....))))))))))))) ...) ))).)))))))))..)))).....)))) | 1.000 -38.72 | |
| celegans | (((((.....(((((((((.((((...((.((((((((.((..( (... ..) )...)).)))))))))) ...) ))).))))))))).))))) | 1.000 -35.60 | |
| cbrenneri | .((((...((((((......(((((((((.((((...((.((((((((.(((.. .... ... ....))))))))))))) ...) ))).)))))))))..)))).))...)))).. | 0.998 -41.32 | |
| cjaponica | (((.(((..(((( (((((....(((((.(((.. .... .)))..)))))......)))))))) ).....))).))) | 0.804 -13.70 | |
| ppacificus | ((((((.((((((...((.((((( (((((((.. ( ((.. .......))).)))))))))))))).)))))).)))))) | 1.000 -24.80 |
| cbriggsae | chromosome:chrIV:7676290:7676373:-1 | Same_strand|Intronic_coding|NM_007735|Col4a4 ## Opposite_strand|Intronic_coding|NM_033150|COL2A1 ## Same_strand|Intronic_non-coding|NM_001029258|clec-266 ## {Repeats: no} ## {MIR: cbr-mir-58} |
| cremanei | chromosome:chrUn:147063280:147063387:1 | Same_strand|Intronic_coding|NM_126152 |
| celegans | chromosome:chrIV:3233250:3233340:1 | Same_strand|Intronic_coding|Y67D8A.1.1 ## {MIR: cel-mir-58} |
| cbrenneri | chromosome:chrUn:166102196:166102308:1 | intergenic |
| cjaponica | chromosome:chrUn:54464155:54464278:1 | intergenic |
| ppacificus | chromosome:chrUn:57094622:57094745:1 | Opposite_strand|Intronic_coding|NM_001081764 |
©2008 InteRNA Genomics B.V.