miR-Intess: cbr-mir-67

cbr-mir-67

Cloning frequencies
absolute	AF16
cbr-mir-67 3arm	18
normalized	AF16
cbr-mir-67 3arm	0.047

block1647 (miRBase cbr-mir-67) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-67	0.002	no	no	0.42/0.45	20/24/1.00	0.0	0.0	16	0	1	0	14	4	3arm	1	nd	0.26	3	18	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------CACAACC----------------------------------------------	16	miR-67
seed	--------------------------------------------------------------------------UCACAAC-----------------------------------------------	1	novel
seed	------------------------------------------------------------------------------AACCUCC-------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------TCACAACCTCCTAGAAAGAGTAG-------------------------------	23	16
	-----------------------------------------------------------------------------CAACCTCCTAGAAAGAGTAG-------------------------------	20	1
	-------------------------------------------------------------------------ATCACAACCTCCTAGAAAGAGTAG-------------------------------	24	1
cbr-miR-67	--------------------------------------------------------------------------TCACAACCTCCTAGAAAGAGTAGA------------------------------	24	-
cbriggsae	--------------TAGAT--ATTTCGATCAACTCATTCTGCTGGTTGTTATGCTGACAATTGATGATTAAGCATCACAACCTCCTAGAAAGAGTAGACCGAT------TCTATCTT-----------
cremanei	----------------GAT--TATTCGATCAACTCGTTCTGCTGGTTGTTATGCTGAAACAGAA---AGAAGCATCACAACCTCCTAGAAAGAGTAGATCGATTC-----------------------
celegans	--------CGATCAAAGAT--TCGTCGATCCGCTCATTCTGCCGGTTGTTATGCTATTATCAGA---TTAAGCATCACAACCTCCTAGAAAGAGTAGATCGAT------TTTAAAACTTTGAATTTCG
cbrenneri	------------------------------AACTCATTCTGCTGGTTGTTATGCCAAACATTGAAATTTAAGCATCACAACCTCCTAGAAAGAGTG--------------------------------
cjaponica	GAATACGTCGGTCCGAGATAACCGTCGATCCGCTCGTTCTGATGGTTGTTATGCCGATCCGAGA-GAAGAAGCATCACAACCTCCAAGAAAGAGTAGATCGACACCGTATCTCAATTCAAGGTTCTTC
ppacificus	---TACCGTAGTCCACGGT--TCACC--TCAACGCCCTCTGTGGGTTGTCTGACTCACAGTGAG---ATCAGTCACACAACCTCCTAGAGTGTGTCGA--GGTTCGTGATCTACCGTA----------
	* * ** **** * ****** * * **
	+++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001011629
	+++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001022613
	----- ----- ---------------------------------------------------------------------------------- -------- -----	NM_007496
	----- ----- ---------------------------------------------------------------------------------- -------- -----	NM_013743
	----- ----- ---------------------------------------------------------------------------------- -------- -----	NM_065840
	+++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_080331
	----- ----- ---------------------------------------------------------------------------------- -------- -----	NM_009573
	+++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_171138
cbriggsae	.(((( (..(((.((.((((.(((((..((((((.(((((...............))))).))))))...))))).)))).)).))). ..))))).	1.000 -30.56
cremanei	... ...((((((.((((.(((((..((((((.(((((......... ...))))).))))))...))))).)))).))))))...	1.000 -32.00
celegans	...((((((.. ..(((((((..(((.(((((..((((((.(((((......... ...))))).))))))...))))).)))..))))))) .......))))))......	0.999 -36.50
cbrenneri	.((((.(((((..((((((.((((.................)))).))))))...))))).)))).	1.000 -19.73
cjaponica	((((.....((...((((((...(((((((..(((.((((...((((((.((((...((..... ...)).)))).))))))....)))).)))..)))))))....))))))...))...))))...	0.899 -41.50
ppacificus	(((.((((..(((((. ..((( ((.((((.(((((.((((((((((((((.....))) .))))....)))))))..))))).)))).)) ))))))))..)))).)))	1.000 -44.80

cbriggsae	chromosome:chrIII:2802682:2802776:1	Same_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## Same_strand\|Intronic_coding\|NM_001022613\|SPBC215.13 ## Opposite_strand\|Intronic_non-coding\|NM_007496\|Zfhx3 ## Opposite_strand\|Intronic_coding\|NM_065840\|SR-famA ## {Repeats: no} ## {MIR: cbr-mir-67}
cremanei	chromosome:chrUn:20982885:20982968:1	Same_strand\|Intronic_coding\|NM_001051693
celegans	chromosome:chrIII:5931291:5931399:-1	Same_strand\|Intronic_coding\|EGAP1.3 ## {MIR: cel-mir-67}
cbrenneri	chromosome:chrUn:27481490:27481624:-1	Opposite_strand\|Intronic_coding\|NM_171138
cjaponica	chromosome:chrUn:137728626:137728752:1	Same_strand\|Intronic_coding\|NM_171138
ppacificus	chromosome:chrUn:118105751:118105856:1	Opposite_strand\|Intronic_coding\|NM_080760

miR-Intess™

cbr-mir-67

block1647 (miRBase cbr-mir-67) [miRNAknown_cloningOK_randfoldOK]