cbr-mir-70
| absolute | AF16 |
| cbr-mir-70 5arm | 1 |
| cbr-mir-70 3arm | 34 |
| normalized | AF16 |
| cbr-mir-70 5arm | 0.003 |
| cbr-mir-70 3arm | 0.089 |
sblock61 (miRBase cbr-mir-70) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-70 | 0.001 | no | no | 0.37/0.45 | 19/23/0.97 | 0.0 0.0 | 0.0 0.8 | 1 24 | 0 0 | 1 1 | 0 0 | 16 13 | 5 8 | 5arm 3arm | 1 1 | nd nd | 0.14 0.17 | 2 2 | 35 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------AAUACGU----------------------------------------------- | 30 | miR-70 |
| seed | -------------------------------------------------------------------AUACGUG---------------------------------------------- | 4 | novel |
| seed | --------------------------GGAACAG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-70 | -----------------------------------------------------------------TAATACGTGA-TTGGTGTTCCCAG------------------------------- | 23 | 15 |
| -----------------------------------------------------------------TAATACGTGA-TTGGTGTTCCC--------------------------------- | 21 | 9 | |
| -----------------------------------------------------------------TAATACGTGA-TTGGTGTTCCCA-------------------------------- | 22 | 4 | |
| ------------------------------------------------------------------AATACGTGA-TTGGTGTTCCCAG------------------------------- | 22 | 4 | |
| -----------------------------------------------------------------TAATACGTGA-TTGGTGTTCC---------------------------------- | 20 | 1 | |
| -------------------------AGGAACAGCCATCATGTAAGAC------------------------------------------------------------------------- | 22 | 1 | |
| -----------------------------------------------------------------TAATACGTGA-TTGGTGTTC----------------------------------- | 19 | 1 | |
| cbriggsae | ---------AAACGGATGTATCTCTAGGAACAGCCATCATGTAAGACATTTCTAACTGAAAGATGTAATACGTGA-TTGGTGTTCCCAGAGTTTACCGTTTC------------------ | ||
| celegans | TTCAAAATAAAACGATGAAAACTATCGAAATACTATCGACGAATAACACTT---ATGAAGAAATGTAATACGTCG-TTGGTGTTTCCATAGTTTGAATTGTTTATTCCATTATTTTTGAG | ||
| cbrenneri | -------TGGCAGAATTGGAACTTCTGAACCACCACTGACGAATCACATTGAAACTAAAGAGATGTAATACGTCATTTGGTGTTTCCGAAGTTTATACTGTCA----------------- | ||
| * * ** * * * * * * *** * * * *********** ******** ** ***** * * | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++ +++++ | NM_001011629 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_001011629 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_080523 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_001046709 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_001011563 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++ +++++ | NM_001087279 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++ +++++ | NM_214670 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_001079883 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_021399 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_001034951 | ||
| ----- ------------------------------------------------------------------ -------------------------- ----- | NM_001111352 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++ +++++ | NM_001028960 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++ +++++ | NM_182335 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++ +++++ | NM_072288 | ||
| cbriggsae | ((((((.((...((((.((((((.((((((((((..(((((((.....))..)))))..))))))) ).)))))))).))))..)))))))). | 1.000 -35.40 | |
| celegans | .((((((..(((((((..(((((((.(((((((((.(((((.((.(((.(( ......)).))).)).))))) .))))))))).)))))))..)))))))..........)))))). | 0.968 -33.10 | |
| cbrenneri | .(((((.....(((((((.(((.(((((.(((((.((.(((((...........))))).)).)))))..))))).))).)))))))...))))). | 0.998 -32.90 |
| cbriggsae | chromosome:chrV:9902620:9902711:-1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_080523|clt ## Same_strand|Intronic_coding|NM_001028960|pmp-5 ## {Repeats: no} ## {MIR: cbr-mir-70} |
| celegans | chromosome:chrV:6665504:6665619:-1 | Same_strand|Intronic_coding|T10H9.5a ## {Repeats: AT_rich 1 29 -1 class=Low_complexity} ## {MIR: cel-mir-70} |
| cbrenneri | chromosome:chrUn:187605846:187605941:-1 | Same_strand|Intronic_coding|NM_072288 |
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