cbr-mir-71
| absolute | AF16 |
| cbr-mir-71 5arm | 858 |
| cbr-mir-71 3arm | 99 |
| normalized | AF16 |
| cbr-mir-71 5arm | 2.237 |
| cbr-mir-71 3arm | 0.258 |
sblock3 (miRBase cbr-mir-71) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-71 | 0.001 | no | no | 0.30/0.53 | 18/24/0.43 | 0.0 0.0 | 0.0 0.0 | 529 94 | 0 0 | 1 1 | 0 0 | 9 8 | 9 6 | 5arm 3arm | 1 1 | nd nd | 0.06 0.09 | 1 1 | 957 | 1 | -3 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------GAAAGAC----------------------------------------------------------------------------------------------- | 853 | miR-71 |
| seed | -------------------------------------------------------------------------------------------AUCACUA---------------------------------------------- | 97 | novel |
| seed | -----------------------------------------UGAAAGA------------------------------------------------------------------------------------------------ | 2 | novel |
| seed | -----------------------------------------------------------------------------------------------CUAUUCU------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------------UCACUAU--------------------------------------------- | 1 | novel |
| seed | -------------------------------------------AAAGACA---------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------------AGACAUG-------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------GACAUGG------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------TGAAAGACATGGGTAGT------------G------------------------------------------------------------------------- | 18 | 529 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAG----------------------------------------------------------------------- | 20 | 155 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGACG-------------------------------------------------------------------- | 23 | 102 | |
| ------------------------------------------------------------------------------------------TATCACTATTCTGTTTTTCGCC-------------------------------- | 22 | 94 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGAC--------------------------------------------------------------------- | 22 | 55 | |
| cbr-miR-71 | -----------------------------------------TGAAAGACATGGGTAGT------------GA------------------------------------------------------------------------ | 19 | 8 |
| ------------------------------------------------------------------------------------------TATCACTATTCTGTTTTTCG---------------------------------- | 20 | 2 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGACGT------------------------------------------------------------------- | 24 | 2 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGA---------------------------------------------------------------------- | 21 | 2 | |
| --------------------------------------------AAGACATGGGTAGT------------GAGACG-------------------------------------------------------------------- | 20 | 1 | |
| ----------------------------------------------------------------------------------------------ACTATTCTGTTTTTCGCC-------------------------------- | 18 | 1 | |
| ----------------------------------------ATGAAAGACATGGGTAGT-------------------------------------------------------------------------------------- | 18 | 1 | |
| ------------------------------------------------------------------------------------------TATCACTATTCTGTTTTTCGC--------------------------------- | 21 | 1 | |
| ------------------------------------------GAAAGACATGGGTAGT------------GAGAC--------------------------------------------------------------------- | 21 | 1 | |
| -------------------------------------------------------------------------------------------ATCACTATTCTGTTTTTCGC--------------------------------- | 20 | 1 | |
| ---------------------------------------------AGACATGGGTAGT------------GAGACG-------------------------------------------------------------------- | 19 | 1 | |
| ----------------------------------------ATGAAAGACATGGGTAGT------------G------------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | GC--------------------------------TGAACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCGATCAGTC------------------------ | ||
| cremanei | ---------------GTCTGTACCACCAAACACTCGAACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCG---GTCTTGTGATATACCATGTGTCAGAT-- | ||
| celegans | ACAGAG------GTTGTCTGCTC-----------TGAACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCGTCGGGATCGTGACCTGGAAGCTGT------- | ||
| cbrenneri | ------------ACTGTAGACTTTGTCGTCGCCGCTACCGTTGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCG---GTACCCAGGCATCGAAATTAT--GGT-- | ||
| cjaponica | GGATGCCAGCATACAGTCTGC-------------CCGACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCGTCTGGATTGTGACGCAGTTTTGGCCC----- | ||
| ppacificus | GAAGGGAGAATTA---------------------TGGCAGATGAAAGACATGGATGATTTGAATGATTTCGAGCCGATAAACGTTC------TTGTTATTGTGTTTT----------GAGAGTGGCATTGATTGAGATAACTTC | ||
| * ************ * * *** ** * ** * **** ****** | |||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_002035 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_177366 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_001107428 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_214177 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_001011629 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_058481 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_014920 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_058496 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001047248 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001047247 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_016513 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_059707 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_000087 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_010301 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001026219 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001026218 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001026217 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_008139 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_001033318 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001128984 | ||
| cbriggsae | (( (((.((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)).))))). | 1.000 -34.90 | |
| cremanei | ((((((((.......(((..((.((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)) .))..))).........))).))))) | 0.860 -37.79 | |
| celegans | (((((( (((......(( ((.(((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).))))))).....))))).....)))) | 0.954 -38.90 | |
| cbrenneri | (((((((......(((..(((..(((((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)) )))....)))..)))..)))) ))) | 0.988 -45.20 | |
| cjaponica | ....(((((.((...(((..( (.((((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)))).)).....)))...)).))))).. | 0.994 -45.80 | |
| ppacificus | ((((....((((( ((.((.....(((((((.((((((..(((((...(((...)))....))))) ..))))))))))))) .....)).))).)))).......)))) | 0.975 -19.50 |
| cbriggsae | chromosome:chrI:2252472:2252547:-1 | Same_strand|Intronic_non-coding|NM_002035|KDSR ## Opposite_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Opposite_strand|Intronic_coding|NM_214177|CNG-1 ## Same_strand|Intronic_coding|NM_001047247|Y73E7A.1 ## {Repeats: no} ## {MIR: cbr-mir-71} |
| cremanei | chromosome:chrUn:83434594:83434705:-1 | Same_strand|Intronic_coding|NM_001026219 |
| celegans | chromosome:chrI:9379913:9380020:-1 | Same_strand|Intronic_coding|F16A11.3a ## {MIR: cel-mir-71} |
| cbrenneri | chromosome:chrUn:140296022:140296134:1 | Same_strand|Intronic_coding|NM_001026219 |
| cjaponica | chromosome:chrUn:134164449:134164562:1 | Same_strand|Intronic_coding|NM_074448 |
| ppacificus | chromosome:chrUn:63063018:63063124:-1 | intergenic |
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