cbr-mir-72
| absolute | AF16 |
| cbr-mir-72 3arm | 2 |
| normalized | AF16 |
| cbr-mir-72 3arm | 0.005 |
sblock54 (miRBase cbr-mir-72) [miRNAknown_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-72 | 0.001 | no | no | 0.53/0.59 | 19/22/0.67 | nd 0.0 | nd 0.0 | 0 2 | 0 0 | 0 1 | 0 0 | 12 13 | 28 17 | 5arm 3arm | 1 1 | nd nd | 0.16 0.23 | 2 2 | 2 | 1 | -1 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------------------------GCUUCGC------------------------------------------ | 2 | novel |
| seed | --------------------------GGC-AGAU--------------------------------------------------------------------------------------------------------------------------- | 0 | miR-72 |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------------------------------AGCTTCGCCACATCGTGCCATG---------------------------- | 22 | 2 | |
| cbr-miR-72 | -------------------------AGGC-AGATGTTGGCATAGC---------------------------------------------------------------------------------------------------------------- | 19 | - |
| cbriggsae | -------------CTCGCCCGAGCTAGGC-AGATGTTGGCATAGCTGAATGCAAATCAGAAAT------------CGAAATTCGAAAAGTTTGAATTTCGCGCGCTCAGCTTCGCCACATCGTGCCATGCGTAGGCTTGAGA--------------- | ||
| celegans | TTCTGCTGAAGGTCCCGTCAGAGCTAGGCAAGATGTTGGCATAGCTGAATGAT----------------------CGCTATAACAA----------------CTATCAGCTTCGCCACATTCTGCCACGCACTGATGTGAGGACCTGATTTTTTGAA | ||
| cbrenneri | ---------TGGATTCGTTAGAGCTAGGCAAGATGTTGGCATAGCTGAATGAAATTCTCGATTATCTCCTTTTTTCGACAAAAGGGAGAGT-----------CACTCAGCTTCGCCACATATTGCCACGCGCTGATTTGAGTCCA------------ | ||
| cjaponica | -----------------------CTAGGCAAGATGTTGGCATAGCTGAACTAAAACCGC----------------CGGCGTCAGGTA------------------TCAGCTTCGCCACATTCTGCCAAG---------------------------- | ||
| ****** ******************* ** *************** ***** * | |||
| cbriggsae | ((((((...((..((( (((((.((((..((((((.(((........... ((((((((((.....)))))))))).))).))))))..)))))))).))))..))...)))..))). | 0.850 -46.90 | |
| celegans | .........((((((((((((.((..((((..(((.((((..((((((..... ........... ...))))))..)))))))..))))..)).))))))...))))))........... | 0.946 -44.21 | |
| cbrenneri | .(((((((((((.((..(((((.(((.((((..((((((.(((............((((((((((.....)))))))))).) )).))))))..))))))).)))))..)).)))))..)))))). | 0.872 -52.82 | |
| cjaponica | ...((((..(((.((((..(((((((((.....((. ...))...))). ))))))..)))))))..))))... | 1.000 -28.50 |
| cbriggsae | chromosome:chrUn:6734604:6734719:-1 | {Repeats: no} ## {MIR: cbr-mir-72} |
| celegans | chromosome:chrII:2452830:2452948:1 | intergenic ## {MIR: cel-mir-72} |
| cbrenneri | chromosome:chrUn:87557314:87557438:1 | intergenic |
| cjaponica | chromosome:chrUn:88945938:88946093:1 | intergenic |
©2008 InteRNA Genomics B.V.