miR-Intess: cbr-mir-784

cbr-mir-784

Cloning frequencies
absolute	AF16
cbr-mir-784 5arm	2
normalized	AF16
cbr-mir-784 5arm	0.005

block4579 (miRBase cbr-mir-784) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-784	0.001	no	no	0.41/0.43	21/22/1.00	0.0	0.0	2	0	1	0	8	5	5arm	1	nd	0.14	2	2	1	na	na

		reads	miRBase family seed
seed	------------------------------GGCACAA-----------------------------------------------------------------------------------	2	miR-784
		len	cloning frequencies
			AF16
	-----------------------------TGGCACAATACCTGTATGTAG----------------------------------------------------------------------	21	2
cbr-miR-784	-----------------------------TGGCACAATACCTGTATGTAGA---------------------------------------------------------------------	22	-
cbriggsae	--------------------CTACCAAG-TGGCACAATACCTGTATGTAGATAGTG----AAGTAATATTGT-TCTACATACACCTATTGAGCCACCTGGTGG-----------------
cremanei	------------ACTTTGCGTTACCGTA-TGGCACAATACTTGCATGTAGAC--------GTGACGTTTGTGATCTACATACATCTATTGAGCCATCCGGTATTCTTGCAAAGT------
celegans	TCGTATTCTCAGTTTTTCGACGTCCACG-TGGCACAATCTGCGTACGTAGAAAGAT----CAAAAAGTCACT-TCTATGTACAAATGTTGCGCTGCCTGGCACAGTGAATGAATTTATGG
cbrenneri	-----------------------------TGGCACAAGCGATGAGTTCAACG--------ACGATAACAGTG-TCTCTGAATTCATGTCCAAGTACCA----------------------
cjaponica	-------------------GTCACGGCGTTGGCACAAAACCTTTTTTTTTAAAGCATTTCATGGAATTTTCC-TTGAAAAGCCTTTA-AGAATGATTTTGAGCAAACGCCGCGAC-----
ppacificus	-----------------------------TGGCACAAGAAGCGAAAGTGGATAAC-----ATGGAAACATTC-TCTGCAGCTTCTTG-CAATGCAC------------------------
	******** * *
	+++++ ++++++++ +++++++++++++++++++++++++++ ++++++++++++ ++++++++++++++++++++++++++++++ +++++	NM_003107
	+++++ ++++++++ +++++++++++++++++++++++++++ ++++++++++++ ++++++++++++++++++++++++++++++ +++++	NM_011438
	+++++ ++++++++ +++++++++++++++++++++++++++ ++++++++++++ ++++++++++++++++++++++++++++++ +++++	NM_008638
cbriggsae	((((((.( ((((.(((((..((((((((((((((( ......))))). ))))))))))..))))).))))).))))))	1.000 -36.20
cremanei	((((((((.(((((.( ((((.(((((..((.((((((.. ((.((....)).)))))))).))..))))).))))).)))))....))))))))	1.000 -36.80
celegans	.((((...(((....((((..(((((.( ((((.((((....((((((((((.((( ......)))..) )))))))))....)))).))))).))).))..)))))))...)))).	0.993 -31.70
cbrenneri	.((.((..((.(((((((((..( (((.......)) ))..)))))))))))....)).)).	0.988 -14.70
cjaponica	(((.(((((((.((.(((((......((((((((((.(((((.(((....))) .))))).)).)))) ))))...))))).)).))))))).)))	1.000 -34.70
ppacificus	..(((((((((((....(((((.... (((....))).. ))))).)))))))) ...)))..	0.998 -20.50

cbriggsae	chromosome:chrX:13820037:13820113:-1	Same_strand\|Intronic_non-coding\|NM_003107\|SOX4 ## {Repeats: no} ## {MIR: cbr-mir-784}
cremanei	chromosome:chrUn:111107627:111107719:-1	intergenic
celegans	chromosome:chrX:8074853:8074966:-1	intergenic ## {MIR: cel-mir-784}
cbrenneri	chromosome:chrUn:134351040:134351156:-1	Opposite_strand\|Exonic_coding\|NM_068999
cjaponica	chromosome:chrUn:142432815:142432908:1	Opposite_strand\|Intronic_coding\|NM_065010
ppacificus	chromosome:chrUn:141232002:141232118:-1	Opposite_strand\|Intronic_coding\|NM_001067741

miR-Intess™

cbr-mir-784

block4579 (miRBase cbr-mir-784) [miRNAknown_randfoldOK]