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cbr-mir-785

cbr-mir-785

block4920 (miRBase cbr-mir-785) [miRNAknown_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-7850.001nono0.33/0.3321/21/1.00nd
nd
0
0
0
0
16
6
3arm
1
nd
0.00
0
00nana
block4920 hairpin
  readsmiRBase family seed
seed     ------------------------------------------------------------------------------------AAGUGAA--------------------------------------------     0miR-785/86
  lencloning frequencies
   
cbr-miR-785     -----------------------------------------------------------------------------------TAAGTGAA-TACTCTGTGTTGA------------------------------     21
cbriggsae     ----------------TTGCTC-TTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAA-TACTCTGTGTTGATGGTGATGATGCTGAA--------------      
cremanei     --------------------TC-TTTTTTGTCCGTCAGCGCAGAATTTTTTCGCTTACACGAGTAATG-TAAA-----CGATGTAAGTGAA-TATTCTGTGTCGATGGGTATAAAAAGATAATGATGGTT-----      
celegans     TCGGAAAGCTGCCAAAGCTCTT-TTTCTCACCCATCAGCACAGAATTTTTC-GCTAACAGAAACCTC---AAAACA----ATGTAAGTGAATTGTTTTGTGTAGATGGTGGAAATGAGCAGGCAATGTTTTCTGA      
cbrenneri     ------------------GCTCTTTTCTCTCCCGTTAGCACAAAATATTTT-ACTTACACATAAC-----AAAACATATGATGTAAGTGAA-TACTTTGTGTTAATGGAAAAAGGGC------------------      
cjaponica     ----------------------------------CTAACCCAGAACAACTC-GCTAACACGAACACTGAGAAA-----TGATGTAAGTGAA-TGTTCTGTGTTGG------------------------------      
ppacificus     ----------------TCGCAA-GTTTATGTACATTAACATGAAG-----------------GAAATATATAATGAATTAATGAAAGTGAA---ACTTGCTTTGA------------------------------      
                                          * *    *                           **       *** *******      **  *                                       
 +++++                ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++              +++++NM_178660
 -----                ------ -------------------------------------------------------------------- -----------------------------              -----NM_133381
 -----                ------ -------------------------------------------------------------------- -----------------------------              -----NM_002254
 -----                ------ -------------------------------------------------------------------- -----------------------------              -----NM_001059519
 -----                ------ -------------------------------------------------------------------- -----------------------------              -----NM_024598
 -----                ------ -------------------------------------------------------------------- -----------------------------              -----NM_175804
 -----                ------ -------------------------------------------------------------------- -----------------------------              -----NM_001089427
 -----                ------ -------------------------------------------------------------------- -----------------------------              -----NM_001110788
cbriggsae                     ..((.. ..(((..(((((((((((((((((.(((.((((((((((...............))).)))))))))) )))))))))))))))))..))).))....                   1.000 -43.16
cremanei                         (( (((((..((((((.(((((((((...((((((((((((....... ....     )).)))))))))) .))))))))).))))))...)))))))...........          0.993 -37.50
celegans     (((((((((((((...((((.. ((((.((.(((((.(((((((((..((( (((.(((........   ......    .))).))))))..))))))))).))))))))))).)))).))))..)))))))))     0.999 -51.76
cbrenneri                       ((((((((.....(((((((((((((.((.((( (((((((((((..     ......)))).)))))))))) )).))))))))))))).))))))))                       1.000 -35.20
cjaponica                                       (((((.(((((((..(( (((.(((..............     ...))).))))). ))))))).)))))                                   0.949 -17.83
ppacificus                     ..(((( ((((((...(((((((((....                 ..........)))..))))))...)))))   .))))).....                                   0.980 -12.14

cbriggsaechromosome:chrX:7891064:7891166:1Same_strand|Intronic_non-coding|NM_178660|Rbms3 ## Opposite_strand|Intronic_non-coding|NM_133381|Crebbp ## Opposite_strand|Intronic_coding|NM_002254|KIF3C ## {Repeats: no} ## {MIR: cbr-mir-785}
cremaneichromosome:chrUn:4287760:4287861:-1intergenic
celeganschromosome:chrX:3004644:3004769:1intergenic ## {MIR: cel-mir-785}
cbrennerichromosome:chrUn:1355192:1355283:1intergenic
cjaponicachromosome:chrUn:20283840:20283982:-1intergenic
ppacificuschromosome:chrUn:112799539:112799681:-1Opposite_strand|Intronic_coding|NM_212489 ## Same_strand|Intronic_coding|NM_167334


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