miR-Intess: cbr-mir-789a

cbr-mir-789a

Cloning frequencies
absolute	AF16
cbr-mir-789a 3arm	1
normalized	AF16
cbr-mir-789a 3arm	0.003

block4112 (miRBase cbr-mir-789a) [miRNAknown_rep]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-789a	0.051	no	tRNA	0.48/0.60	20/23/1.00	0.0	0.5	2	0	1	0	6	10	3arm	2	nd	0.25	2	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------CGAUCCC-------------------------	2	novel
seed	------------------------------------------------------------------CCCUGCC---------------------	0	miR-789a/789b
		len	cloning frequencies
			AF16
	-------------------------------------------------------------TCGATCCCTGCCTGGGTCAA-------------	20	1
	-------------------------------------------------------------TCGATCCCTGCCTGGGTCAAA------------	21	1
cbr-miR-789a	-----------------------------------------------------------------TCCCTGCCTGGGTCAAATGTTTT------	23	-
cbriggsae	gaaacgtggccttgtggcctaatggataaggcgtctgacttctaatcagaagattgcaggtTCGATCCCTGCCTGGGTCAAATGTTTTtgtttt
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205579
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031572
	--------------------------------------------------------------------------------------------------------	NM_011821
	--------------------------------------------------------------------------------------------------------	NM_102563
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016453
	--------------------------------------------------------------------------------------------------------	NM_134696
	--------------------------------------------------------------------------------------------------------	NM_072974
	--------------------------------------------------------------------------------------------------------	NM_001079844
	--------------------------------------------------------------------------------------------------------	NM_182305
	--------------------------------------------------------------------------------------------------------	NM_072990
cbriggsae	((((((.(((....(((((((..((...(((.(((.(((((.(((((....))))).))))).))).))).)))))))))...)))..))))))	1.000 -28.30

cbriggsae

chromosome:chrV:10778669:10778762:1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_205579|myo3a ## Same_strand|Intronic_non-coding|NM_031572|Cyp2c12 ## Opposite_strand|Intronic_coding|NM_102563|AT1G27980 ## {Repeats: tRNAArgACG_CB 1 84 1 class=tRNA} ## {MIR: cbr-mir-789a}

miR-Intess™

cbr-mir-789a

block4112 (miRBase cbr-mir-789a) [miRNAknown_rep]