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cbr-mir-789b

cbr-mir-789b

block3675 (miRBase cbr-mir-789b) [miRNAknown_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-789b0.002nono0.65/0.6523/23/1.00nd
nd
0
0
0
0
16
5
3arm
1
nd
0.09
1
00nana
block3675 hairpin
  readsmiRBase family seed
seed     -----------------------------------------------------------------------------CCCUGCC-------------------------------------------     0miR-789a/789b
  lencloning frequencies
   
cbr-miR-789b     ---------------------------------------------------------------------G-------CCCTGCCTGGGTCACCATGTG------------A----------------     23
cbriggsae     ------------TTGCCCGACTTCGGATTCACGTGGTCATCCAGGCGGTGCACGTTAAAAGATATAAATG-------CCCTGCCTGGGTCACCATGTG------------AATAGGGAATACGGTCA      
cremanei     -----------------------------CGAATGGTAGCCGAGGAAGGGTATCTAGAAAGA------AGGATTA--CCCTGCCTGGGTCACCATTTG-----------------------------      
celegans     ------------TGTCCTGAAGGCGGA--CAATTGATGACTCAGGCAGGG-ACTAATCATGATTGT--CGATTTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGACAAAGAATATATACT      
cbrenneri     ----------------CTGGTTGACGAAACGATTGGTCATCCAGGCGGAGCATCTCAGAAGGCTTG-----------CCCTGCCTGGGTCACCAATTGTC--------TCGGAAAACTAG-------      
cjaponica     GTCAAACGAGGTTAGTGCAACCTTTTCAACAGTTGGTGACCCAGGAAGGG-ATTAGAAAAGATTTCACAAGTTCAATCCCTGCCTGGGTCACCAATTGTTGAATTGGTTTCACAAAATGGTCAAGAC      
                                   *   ** *     ***  * * *      * *                *****************  **                                   
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_001081076
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_075157
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_074754
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_074932
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_074581
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_074580
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_004906
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_071419
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_131864
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_074935
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_059170
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_001029639
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_072577
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_074576
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_074932
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_071744
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_074581
 -----            ----------------------------------------------------------       ---------------------            ----------------------NM_074579
 +++++            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++       +++++++++++++++++++++            ++++++++++++++++++++++NM_071647
cbriggsae                 .((.(((..(((..(((((((((((.((((((((((.(((..(((.......))).))       ).)))))))))).))))))))            )))..)))...))).))     1.000 -42.70
cremanei                                  ((((((((..((.(((.(((((((((.......      .)))).)  )))).))).))..))))))))                                  1.000 -30.80
celegans                 (((((((..(((.((  ((((((.(((((((((((((( (((((...((.....  ))..))))))))))))))))))).)))))))).)))..)).))))).............     0.990 -63.50
cbrenneri                     ((((((..(((.(((((((((.((((((((((.(((..((....))..))           ).)))))))))).))))))))).        )))...))))))            1.000 -45.20
cjaponica     ..............(((.((((..(((((((((((((((((((((.(((( (((.(((.............)))))))))).)))))))))))))))))))))..)))).)))..............     0.856 -60.42

cbriggsaechromosome:chrV:3127586:3127681:-1Opposite_strand|Intronic_coding|NM_001081076|Gucy2g ## Same_strand|Intronic_coding|NM_074754|F26D2.13 ## Same_strand|Intronic_non-coding|NM_004906|WTAP ## {Repeats: no} ## {MIR: cbr-mir-789b}
cremaneichromosome:chrUn:52159842:52159977:-1Opposite_strand|Intronic_coding|NM_071305 ## Same_strand|Intronic_coding|NM_071724
celeganschromosome:chrIV:17309249:17309358:-1Opposite_strand|Intronic_coding|T28F3.9 ## {MIR: cel-mir-789-2}
cbrennerichromosome:chrUn:43323640:43323724:1intergenic
cjaponicachromosome:chrUn:75784925:75785050:-1Same_strand|Intronic_coding|NM_001047261


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