C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

cbr-mir-791

cbr-mir-791

block4980 (miRBase cbr-mir-791) [miRNAknown_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-791	0.001	no	no	0.52/0.52	23/23/1.00	nd	nd	0	0	0	0	11	6	3arm	1	nd	0.22	4	0	0	na	na

block4980 hairpin

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------UUGGCAC---------------------------------------------------	0	miR-790/791
		len	cloning frequencies

cbr-miR-791	------------------------------------------------------------------------------------ATTGGCACT--CCGCTGATTT--GGTG--------------------------------	23
cbriggsae	------------------------GAATTCTCGA-------TCACCGTATCACGTGTGGCCAAAGTCAAATCCATTATTG-AACATTGGCACT--CCGCTGATTT--GGTGATCGACT-TTTC--------------------
cremanei	---------------GTTACGTTCGAATTCTCAA-------TCACCTTGTCAGGTTTAGCCAAAGTCAAACATAAACTG--AACTTTGGCACT--CCGCTGATTT--GGTGATAGAGTTTTTTGGC--ATGTTTTC-------
celegans	-------GTCTACTTTGTAGGTTTGAACCTTCGA-------TTACCTTATCCGTTGTAGCCAAAGTTCAACGAAG--CGGCAACTTTGGCACT--CCGCAGATAA--GGCAATCGATTGTTTTTG---ACACTTCAATACCAC
cbrenneri	TTTTTCGATCGACGGGAAGTTGTTGGAGTTTCCA-------TCAC------------AGCCAAGG---AATAGGA------ACGATTGGCACT--CCTGGAATTTCAGATAAT------TTTCAG---AATTTTTCAGAAAAA
cjaponica	----------------AACTTTTTGAAGGTCTTACTGAGAGTAGCCATCGAATTCGGAGCCTGCGCCAAATGAAATATAGTGAATTTGGCACCTGCTTCAAATTC--AATGAC------TATTAGCCAAAAATTTCGCGAGTT
	* * * * * *** * ***** * ** * * *
	----- ---------- --------------------------------------- ------------ ---------- ----------- ---- -----	NM_027552
	----- ---------- --------------------------------------- ------------ ---------- ----------- ---- -----	NM_001019667
	+++++ ++++++++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++ +++++++++++ ++++ +++++	NM_011438
cbriggsae	(((...(((( ((((((.((((.(((..(((((..((((........))) )...)))))... .))))))).) ))))))))).. .)))	1.000 -31.70
cremanei	...(((((((((..(((.( (((((..(((((.....((((((((((.........)) ).)))))))... ...))))).. )))))).)))...))))). ))))....	1.000 -34.60
celegans	.......(((.(((((.((((..(((( ((.(((((((((..((.(((((((((...((... ))..))))))))))). .))..))))) )).))))))..))))..) )).)).)))......	0.807 -37.80
cbrenneri	.(((((((......((((((((((.(((.((((( .... .(((((.. ....... ....)))))... ..))))).))).)))))) )))).. ......)).))))).	0.806 -23.86
cjaponica	(((((..(((((...........(((((.(((.(((((.(((((....(((((((............)))))))....))))).))))) .))).) )))).........))))).)))))	0.806 -27.85

cbriggsae	chromosome:chrX:10981889:10981974:1	Opposite_strand\|Intronic_non-coding\|NM_027552\|Kynu ## Opposite_strand\|Intronic_coding\|NM_001019667\|SPAC17A2.10c ## Same_strand\|Intronic_non-coding\|NM_011438\|Sox12 ## {Repeats: no} ## {MIR: cbr-mir-791}
cremanei	chromosome:chrUn:2002741:2002846:-1	intergenic
celegans	chromosome:chrX:5809292:5809411:1	intergenic ## {MIR: cel-mir-791}
cbrenneri	chromosome:chrUn:93577891:93577994:-1	Opposite_strand\|Boundary_coding\|NM_067602 ## {SimpF: trf}
cjaponica	chromosome:chrUn:48842583:48842701:1	intergenic

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