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cbr-mir-792

cbr-mir-792

block558 (miRBase cbr-mir-792) [miRNAknown]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-7920.028noUnknown0.22/0.2223/23/1.00nd
nd
0
0
0
0
8
13
3arm
1
nd
0.17
2
00nana
block558 hairpin
  readsmiRBase family seed
seed     ---------------------------------------------------------------------------------UGAAAUU-------------------------------------     0miR-792
  lencloning frequencies
   
cbr-miR-792     --------------------------------------------------------------------------------TTGAAATTTTTTCTATTTTCGGT----------------------     23
cbriggsae     ----------GAAAACATCGAAAAATGAGAAAATTATAATTGTTGGAGGTTGTGACACAAAACTA------TGAAA----TTGAAATTTTTTCTATTTTCGGTCCTTTTTC--------------      
celegans     ---------------------------GCCAAATTGCCAAAATTGAAGTTTCTGGCAAATCGGCAAATTGCCAGAA----TTGAAATTTCCGGCAAATTGGC-----------------------      
cbrenneri     GATTCTAATCGATTTTTTTGGAAAATTAGAACAAAATAAAAATTGGATTTTTTTTGAAAAAAATTTTTTTCTAAAAAATGTTGAAATTTTTTTTGTTCTAATTTTCCAGAAAATCGATAAAAATC      
cjaponica     --------------GACGATAAAAGAGAGAAAATTTTCAGATC----ATCTGCATAAAGCAGATAATTTGAT--------TTGAAATTATCTCCAATATCGTTGATGTAC---------------      
ppacificus     --------------CCTTTCAATGATGTGAAAATTGTCAAATTCGCTACTATTATGTAGAAGCTACA-------------CTGAAATTTTTTCTATTGAGTG-----------------------      
                                    * *     *                                          *******                                           
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_080322
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166960
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166961
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166962
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166963
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166964
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166965
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166966
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166967
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166968
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166969
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166970
 -----          -------------------------------------------------------      -----    -------------------------------              -----NM_166971
cbriggsae               (((((.((((((((..(((((((((.(((((..(((...(((.....)))..)))      ...))    ))).)))))))))..))))))))...)))))                   1.000 -19.00
celegans                                (((((.(((((.(((((..((.(((((((((.........)))))))))    ))..)))))..))))).)))))                            0.999 -27.60
cbrenneri     ((((...(((((.(((((((((((((((((((((((.((((.((.(((.((((((((((((....)))))).)))))).))).)).))))))))))))))))))))))))))))))))...))))     1.000 -41.30
cjaponica                   (((((((...((((......(((((((((    ((((((.....))))).....))))        ))))))...))))...))))))).......                    1.000 -26.30
ppacificus                   ...(((((((....(((((((.(((.....(((.((((...)))).)))....             .))))))))))..)))))))..                            0.966 -12.10

cbriggsaechromosome:chrI_random:2916442:2916532:1Opposite_strand|Intronic_non-coding|NM_080322|dnc ## {Repeats: no} ## {MIR: cbr-mir-792}
celeganschromosome:chrIII:2845610:2845680:-1intergenic ## {Repeats: CERP3 -577 788 1 class=Unknown} ## {SimpF: trf,trf,trf,trf}
cbrennerichromosome:chrUn:30458692:30458816:-1Same_strand|Intronic_coding|NM_214690
cjaponicachromosome:chrUn:72086679:72086762:-1intergenic
ppacificuschromosome:chrUn:50536788:50536918:-1Opposite_strand|Intronic_coding|NM_001045439


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