cbr-mir-85
| absolute | AF16 |
| cbr-mir-85 5arm | 3 |
| cbr-mir-85 3arm | 14 |
| normalized | AF16 |
| cbr-mir-85 5arm | 0.008 |
| cbr-mir-85 3arm | 0.036 |
sblock11 (miRBase cbr-mir-85) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-85 | 0.001 | no | no | 0.33/0.42 | 23/25/0.67 | 0.0 0.5 | 0.0 0.3 | 3 13 | 0 0 | 1 1 | 0 0 | 9 7 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.08 0.16 | 1 1 | 17 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------ACAAAGU-------------------------------------- | 7 | miR-85 |
| seed | -----------------------------------------------------------------------UACAAAG--------------------------------------- | 7 | novel |
| seed | -----------------------CGCUUUU--------------------------------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------TTACAAAGTA-----TTTGAAAAGGCGTGC----------------- | 25 | 6 | |
| -----------------------------------------------------------------------TACAAAGTA-----TTTGAAAAGGCGTG------------------ | 23 | 4 | |
| ----------------------CCGCTTTTTCAG-TAG-----TTTGAAACC----------------------------------------------------------------- | 24 | 3 | |
| cbr-miR-85 | -----------------------------------------------------------------------TACAAAGTA-----TTTGAAAAGGCGTGC----------------- | 24 | 3 |
| ----------------------------------------------------------------------TTACAAAGTA-----TTTGAAAAGGCGTG------------------ | 24 | 1 | |
| cbriggsae | -------------CCCCGGTGCCCGCTTTTTCAG-TAG-----TTTGAAACCAGAGAT-GAT--AGTTGGTTACAAAGTA-----TTTGAAAAGGCGTGCACTGGGT---------- | ||
| cremanei | GAAGACGTTCTGAAGTCGGAGCCCGTCTTTCCAA-TAT-----TTTGAAACCAGTACT-CATGCAAATGGTTACAAAGTA-----TTCGAAAAGGCGTGCTCTGAGAAGAGCTCTTC | ||
| cbrenneri | -----TTTTCTAGCTCCG----CCGCTTTTTGAGATATGCACCTTTGAAGTTGCCGATAGACACAGACAGTTCAAAGGCGCATATCTCAAAAAGGGGCGGAGCTAGAGAA------- | ||
| ** *** *** * ** ****** * * * *** ** * * ****** * * * | |||
| +++++ +++++++++++++++++++++ +++ +++++++++++++++ +++ ++++++++++++++++ ++++++++++++++++++++++ +++++ | NM_001111027 | ||
| +++++ +++++++++++++++++++++ +++ +++++++++++++++ +++ ++++++++++++++++ ++++++++++++++++++++++ +++++ | NM_001111026 | ||
| +++++ +++++++++++++++++++++ +++ +++++++++++++++ +++ ++++++++++++++++ ++++++++++++++++++++++ +++++ | NM_009822 | ||
| ----- --------------------- --- --------------- --- ---------------- ---------------------- ----- | NM_063364 | ||
| cbriggsae | .((((((((.((((((((((( ((. ((((.((((((.... ... ..)))))).)))).)) .))))))))))).)))))))). | 1.000 -39.60 | |
| cremanei | (((((.(((((....(((((((.((((((((.(( ((( ((((.(((((..... ........))))).))))))) )).)))).)))).)))))))..)))))))))) | 1.000 -42.42 | |
| cbrenneri | .(((((((((((( ((.(((((((((((((((.((((((((.(((..............))))))))))).))))))))))))))).)))))))))))))). | 0.998 -63.54 |
| cbriggsae | chromosome:chrII:3615930:3616009:-1 | Same_strand|Intronic_non-coding|NM_001111027|Runx1t1 ## Opposite_strand|Intronic_coding|NM_063364|F49E12.8 ## {Repeats: no} ## {MIR: cbr-mir-85} |
| cremanei | chromosome:chrUn:7600967:7601071:1 | Opposite_strand|Intronic_coding|NM_001047948 |
| cbrenneri | chromosome:chrUn:147845286:147845386:-1 | intergenic |
©2008 InteRNA Genomics B.V.