cbr-mir-86
| absolute | AF16 |
| cbr-mir-86 5arm | 1339 |
| cbr-mir-86 3arm | 4 |
| normalized | AF16 |
| cbr-mir-86 5arm | 3.490 |
| cbr-mir-86 3arm | 0.010 |
sblock29 (miRBase cbr-mir-86) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-86 | 0.001 | no | no | 0.39/0.50 | 18/25/0.97 | 0.0 0.0 | 0.4 0.0 | 1178 3 | 0 0 | 1 1 | 0 0 | 14 17 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.22 0.14 | 2 2 | 1343 | 1 | 2 | 3 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------AAGUGAA-------------------------------------------------------------------------------------------------------- | 1328 | miR-785/86 |
| seed | -------------------------------------------GAAUGCU---------------------------------------------------------------------------------------------------- | 7 | novel |
| seed | ---------------------------------------------------------------------------------------UGGGC-UU------------------------------------------------------- | 4 | novel |
| seed | ----------------------------------------AGUGAAU------------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------------------------------------AAUGCUU--------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-86 | --------------------------------------TAAGTGAATGCTTTGCCACAGTC----------------------------------------------------------------------------------------- | 23 | 764 |
| --------------------------------------TAAGTGAATGCTTTGCCACAGT------------------------------------------------------------------------------------------ | 22 | 414 | |
| --------------------------------------TAAGTGAATGCTTTGCCACAGTCT---------------------------------------------------------------------------------------- | 24 | 86 | |
| --------------------------------------TAAGTGAATGCTTTGCCACAG------------------------------------------------------------------------------------------- | 21 | 28 | |
| --------------------------------------TAAGTGAATGCTTTGCCAC--------------------------------------------------------------------------------------------- | 19 | 15 | |
| --------------------------------------TAAGTGAATGCTTTGCCA---------------------------------------------------------------------------------------------- | 18 | 15 | |
| ------------------------------------------TGAATGCTTTGCCACAGTC----------------------------------------------------------------------------------------- | 19 | 5 | |
| --------------------------------------TAAGTGAATGCTTTGCCACAGTCTT--------------------------------------------------------------------------------------- | 25 | 3 | |
| --------------------------------------------------------------------------------------CTGGGC-TTAGATTCACTTAGGC----------------------------------------- | 22 | 3 | |
| --------------------------------------TAAGTGAATGCTTTGCCACA-------------------------------------------------------------------------------------------- | 20 | 3 | |
| ---------------------------------------AAGTGAATGCTTTGCCACAGTC----------------------------------------------------------------------------------------- | 22 | 2 | |
| --------------------------------------------------------------------------------------CTGGGC-TTAGATTCACTTAG------------------------------------------- | 20 | 1 | |
| ------------------------------------------TGAATGCTTTGCCACAGT------------------------------------------------------------------------------------------ | 18 | 1 | |
| -------------------------------------------GAATGCTTTGCCACAGTCTT--------------------------------------------------------------------------------------- | 20 | 1 | |
| ---------------------------------------AAGTGAATGCTTTGCCACAGT------------------------------------------------------------------------------------------ | 21 | 1 | |
| ------------------------------------------TGAATGCTTTGCCACAGTCT---------------------------------------------------------------------------------------- | 20 | 1 | |
| cbriggsae | ------------------------GAGTCAATGCCGTTTAAGTGAATGCTTTGCCACAGTCTTC--GATCATGTCACA--TGAAGCCTGGGC-TTAGATTCACTTAGGCCGGCGTTCCTTGACTCA------------------------ | ||
| cremanei | TCCCATACTTTTCA-------AACGAGTCGGCGCCGTCTAAGTGAATGCTTTGCCACAGTCTTC--GACCATGTCAAA--TGAAGCCTGGGC-TAAGATTCGCTTAGGCCGGCGTTTTTCGACACGGATCTT------CAACTTTGGTGA | ||
| celegans | -----------------------CGTGTCCACGCCGTCTAAGTGAATGCTTTGCCACAGTCTTC--GATGTTCTGAAA--TGAAGCCTGGGC-TCAGATTCGCTTAGGCCGGAG---TTTGACACG------------------------ | ||
| cbrenneri | CCC----CTTTTTAAAAATACAACGAGTCGGCGCCGTCTAAGTGAATGCTTTGCCACAGTCTTC--GACCATGTCAAA--GGAAGCCTGGGC-TCAGATTCGCTTAGGCCGGCG---TTCGACACGTTTCTTTGTGGGCTGCTTTGGGG- | ||
| ppacificus | --------------------------------------TAAGTGAATTTCTTGCCACAGTCTTA--GCCTAATTCACA-----AGGCTGGGCAATACTTTCGCTTG-------------------------------------------- | ||
| cjaponica | --------------------------------------TAAGTGAATGCTTTGCCACAGTCTTCCGATCTCTGTCGAATGTGAAGCCTGGGT-CGAGATTCGCTTA-------------------------------------------- | ||
| ********* ************* * * ** ***** * *** *** | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_177732 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_001016781 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_001005609 | ||
| ----- ---------------------------------------- ------------ ------------ --------------------------------- ----- | NM_001043354 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_111431 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_001399 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_001109404 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_061520 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++++ ++++++++++++ +++++++++++++++++++++++++++++++++ +++++ | NM_136816 | ||
| cbriggsae | (((((((((((((((((((((((.((..(((.(((.(((( (........... ))))).)))))) ..)))))))))))))).)))))....)))))). | 1.000 -43.40 | |
| cremanei | (((((......... ..((.(((((((((((((((((((((.(((.(((.(((.(((( (((...)))... .)))).)))))) .))))))))))))))).)))))....)))).))...... ......))).)) | 0.908 -49.00 | |
| celegans | ((((((.((.((((((((((((((.((..(((.(((.(((( .((........) ))))).)))))) ..)))))))))))))).)).) )..)))))) | 1.000 -41.30 | |
| cbrenneri | ((( (..........(((((((.(((((((((((((((((((((.((..(((.(((.(((( (((...)))... .)))).)))))) ..)))))))))))))).)))) ).)))).))).....)))).........)))) | 0.824 -55.61 | |
| ppacificus | ((((((((....(((((.(((((((. ...........) )))))))))))....)))))))) | 1.000 -21.70 | |
| cjaponica | (((((((((.(((.(((.(((.((((((.((......)).)).)))).)))))) .)))))))))))) | 1.000 -24.50 |
| cbriggsae | chromosome:chrIII:4132902:4132998:-1 | Same_strand|Intronic_non-coding|NM_177732|Slc35d1 ## Same_strand|Intronic_coding|NM_001016781|LOC549535 ## Opposite_strand|Intronic_non-coding|NM_001043354|Rorb ## {Repeats: no} ## {MIR: cbr-mir-86} |
| cremanei | chromosome:chrUn:4696101:4696232:1 | intergenic |
| celegans | chromosome:chrIII:11936521:11936615:-1 | Same_strand|Intronic_coding|Y56A3A.7a ## {MIR: cel-mir-86} |
| cbrenneri | chromosome:chrUn:102433287:102433423:1 | Same_strand|Intronic_coding|NM_211666 |
| ppacificus | chromosome:chrUn:143169699:143169835:-1 | Opposite_strand|Intronic_coding|NM_182968 ## Same_strand|Intronic_coding|NM_058793 |
| cjaponica | chromosome:chrUn:58779719:58779855:1 | intergenic |
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