miR-Intess: cel-mir-1822

cel-mir-1822

Cloning frequencies
absolute	AF16
cel-mir-1822 3arm	3
normalized	AF16
cel-mir-1822 3arm	0.008

block731 (miRBaseHomolog cel-mir-1822) [miRBaseHomolog_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseHomolog cel-mir-1822	0.002	no	no	0.64/0.65	22/23/1.00	0.3	0.0	3	0	1	0	15	3	3arm	1	nd	0.22	3	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AGCUGCC------------------------------	2	novel
seed	------------------------------------------------------------GAGCUGC-------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------GAGCTGCCCGGGGATAGACTCT----------------	22	2
	-----------------------------------------------------------CGAGCTGCCCGGGGATAGACTCT----------------	23	1
cbriggsae	GTCTAGAAAGGT-CCGAGAGCCTATCCCGGAACGCTATCGGTTGCACTTTTCAAAAAACCGAGCTGCCCGGGGATAGACTCTTGGC-TTCAGAAAGAC
cremanei	----------------AGAGTTTATCCAGGAAAGCTATCGGCCGAGTACTT---AGAACCGAGCTGCCCTCGGATAGACTCT----------------
celegans	TTCTTGAAAACT-CCAATAGTTTCTCTGGGAAAGCTATCGGCCAAA---TTTAACTGTCCGAGCTGCCCTCAGAAAAACTCTTGGC--TCATCGAGAA
cbrenneri	GTCTCGAACACCACCAAGAGTTTATCCAGGAAAGCTATCGGACTGACATTT---AGTACCGAGCTGCCCTGGGATAGACTCTTGGTAATTTTAGAGAC
	* ** * **** ********* * *****
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_001047975
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_001047939
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_101724
	----------------- ------------------------------------------------------------------------- ----------------	NM_001011629
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_001058128
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_063457
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_068373
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_067556
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_202130
	----------------- ------------------------------------------------------------------------- ----------------	NM_014971
	+++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++	NM_062799
cbriggsae	((((....(((. (((((((.(((((((((...((..((((((.............))))))...))))))).)))).)))))))) )).....))))	1.000 -37.12
cremanei	((((((((((((((..(((..((((.......... ....)))))))..))).)))))))))))	1.000 -25.74
celegans	.((((((..... ((((.(((((.((((((..(((..((((.((.. ......)).)))))))..)).)))).))))).)))). ...)))))).	1.000 -31.00
cbrenneri	(((((.......((((((((((((((((((..(((..(((((((((...)) ))).)))))))..))))).))))))))))))).......)))))	1.000 -46.14

cbriggsae	chromosome:chrII:8862548:8862643:-1	Same_strand\|Intronic_coding\|NM_001047975\|LOC683871 ## Same_strand\|Intronic_non-coding\|NM_101724\|AT1G18660 ## Opposite_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## {Repeats: no}
cremanei	chromosome:chrUn:133094406:133094541:-1	Same_strand\|Intronic_coding\|NM_062799
celegans	chromosome:chrII:6015495:6015586:1	Same_strand\|Intronic_coding\|ZK84.2 ## {MIR: cel-mir-1822}
cbrenneri	chromosome:chrUn:49225410:49225504:1	Same_strand\|Intronic_coding\|NM_062799

miR-Intess™

cel-mir-1822

block731 (miRBaseHomolog cel-mir-1822) [miRBaseHomolog_randfoldOK]