miR-Intess: additional hairpins

Additional hairpins

block8154 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.522	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	7	9	5arm	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	--------UCUUGAG-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------TTCTTGAGCACAGTCAAGTTCC---------------------------------------------------	22	1
celegans	cctcaatTTCTTGAGCACAGTCAAGTTCCatgcattcctctaggttttccacattggcgcttgagtccatctaagttagg
	********************************************************************************
celegans	(((.(((((..((.((....((((((.(((((....((....)).......))).)).)))))))).))...))))))))	0.510 -12.80

celegans

chromosome:X:1397317:1397396:1

intergenic ## {SimpF: WRM0636bA02 1 fosmid,WRM0639aA01 1 fosmid,WRM064cE08 1 fosmid,WRM0635cC09 1 fosmid,WRM063cH01 1 fosmid,WRM0629aD05 1 fosmid,WRM0638dE02 1 fosmid,WRM0625bG09 1 fosmid}

block1131 [novel_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	24	9	3arm	2	nd	0.25	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------UAUUAGU------------------------------------	1	miR-230
		len	cloning frequencies
			CE1
	-----------------------------------------------------------CTATTAGTGTGGATCTCTTT------------------------	20	1
celegans	ccacagccattgaggcactaaagaaaaagtatactgtaggcggggtgctccgctcctgcCTATTAGTGTGGATCTCTTTattccactctcgtatggttaggga
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F49D11.4 F49D11.4 F49D11.4
celegans	((..(((((((((((...((((((.....((((((((((((((((((...))).))))))))).))))))....))))))......))))).))))))..)).	0.690 -36.80

celegans

chromosome:I:10913785:10913887:1

Same_strand|Intronic_coding|F49D11.4|F49D11.4 ## F49D11.4|protein_coding|F49D11.4|F49D11.4 [Source:RefSeq_peptide;Acc:NP_492845] ## {SimpF: F49D11.4 1 Expression_profile,WRM0634dE11 1 fosmid}

block2740 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.323	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	11	16	3arm	1	nd	0.43	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------AAAUUGU------------------------	2	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------GAAATTGTGTGACGGTGGTGG-----------	21	2
celegans	gggggatttatggcaggaatataagcctctcggctccccgatgagtggcgatgaggcgGAAATTGTGTGACGGTGGTGGtgctgctcccg
	******************************************************************************************
celegans	(((((..((((.((....((((((((((((((((((......))))..))).))))).....))))))....)).)))).....))))).	0.610 -28.90

celegans

chromosome:II:14746997:14747086:1

intergenic ## {SimpF: WRM062bA05 1 fosmid}

block7707 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.086	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	19	6	5arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------ACUGGCC------------------------------------------------------------------------------------------	1	miR-240
		len	cloning frequencies
			CE1
	-------------------TACTGGCCCCCAAAATCT--------------------------------------------------------------------------------	18	1
celegans	tcaatgaaacagcaacaacTACTGGCCCCCAAAATCTgctcacacatctgcctctctccaatcatttcaccaaaacagtgagcagctgggtgtcgactgttccccgcgcacatttga
	*********************************************************************************************************************
celegans	((((.......((...(((...((((.((((....((((((((..................................)))))))).)))).))))...)))....))......))))	0.850 -23.50

celegans

chromosome:X:5124515:5124631:-1

intergenic ## {SimpF: WRM0619cF05 -1 fosmid,WRM0617cD05 -1 fosmid,WRM069aH02 -1 fosmid,WRM069bC12 -1 fosmid,WRM0632bA11 -1 fosmid,WRM068bC11 -1 fosmid,WRM0611cD12 -1 fosmid,WRM0629dC11 -1 fosmid}

block6286 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.525	no	no	0.33/0.33	24/24/1.00	0.0	0.0	1	0	1	0	13	-3	5arm_loop	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	--------------UUUUCAG--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------TTTTTCAGGTGCTTTACGTAAAGT----------------------------------------------------	24	1
celegans	gttattttttaaaTTTTTCAGGTGCTTTACGTAAAGTttaaaattatgtttttatttgttagattatttatatttatttttaaatgaca
	*****************************************************************************************
celegans	(((((((....(((((..((((((....((((((.........))))))...))))))..)))))................))))))).	0.410 -9.05

celegans

chromosome:MtDNA:507:595:1

intergenic ## {Repeats: dust 417 422 0 class=dust}

block3037 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.015	no	no	0.32/0.32	25/25/0.00	0.0	0.0	1	0	1	0	2	35	3arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------GAUCCAA-------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------------------CGATCCAATGTCTTTAGATTTAATG--	25	1
celegans	agcacttgatcttcgacttttggattgactcttcgagcaagcattctatattcgaaatacttccattgctttcacattccaagaagttcaaCGATCCAATGTCTTTAGATTTAATGct
	**********************************************************************************************************************
	.......................................................................................................<<<<<<<<<<<<<<<<<<<<<<<<<	C16A3.8 C16A3.8 thoc-2
celegans	((((...(((((..(((..((((((((...((((((((((......(((.......)))......))))))...........)))).....)))))))).)))...)))))...))))	0.500 -25.20

celegans

chromosome:III:6373825:6373942:-1

Opposite_strand|Boundary_non-coding|C16A3.8|C16A3.8 ## C16A3.8|protein_coding|thoc-2|Temporarily Assigned Gene name family member (tag-213) [Source:RefSeq_peptide;Acc:NP_498392] ## {SimpF: WRM0640cG10 -1 fosmid,WRM0636aG04 -1 fosmid,WRM0622dB12 -1 fosmid,WRM0614bD12 -1 fosmid,CEOP3856 -1 Operon,C16A3.8 -1 Expression_profile}

block7058 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.851	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	19	9	5arm	1	nd	0.20	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------UUGCUGG---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------GTTGCTGGTGAAGCCATTGG---------------------------------------------------------------------------	20	1
celegans	ccgatcggtcaagaatttcGTTGCTGGTGAAGCCATTGGtaccctgtagaaatgaaaaatgctgatgttattcgaatttttatgccggcacacgttttatattaacacggagga
	******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................................................................................	F36H9.3 F36H9.3 dhs-13
celegans	((..(((((.((......(((((((((((((..(((..(((.....((....)).....)))..)))...)))..........))))))).))).......)).)).))).)).	0.700 -23.62

celegans

chromosome:V:1771693:1771806:1

block4384 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.738	no	no	0.42/0.42	24/24/1.00	0.0	0.0	1	0	1	0	11	14	5arm	1	nd	0.25	4	1	1	na	na

		reads	miRBase family seed
seed	------------UUCAGGC-------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------GTTCAGGCGTAGGAAAATGATAAG---------------------------------------------------------------------------	24	1
celegans	gtaaaatcactGTTCAGGCGTAGGAAAATGATAAGaaataataagaattgccagagtctcgttttcttttttttttcaagctaaatttttttttgaataaacttttttat
	**************************************************************************************************************
	<.......................................................................................................................	C50F7.3 C50F7.3 C50F7.3
celegans	((((((....(((((((((....(((((.((.(((((..((..(((.((....)).)))..))))))).)).)))))..)))...........)))))).....))))))	0.740 -13.80

celegans

chromosome:IV:7732241:7732350:-1

intergenic ## {SimpF: WRM065aD01 -1 fosmid,WRM0640aC10 -1 fosmid,WRM0610cC09 -1 fosmid,WRM0611cE08 -1 fosmid,WRM0631cD04 -1 fosmid,WRM0610aG12 -1 fosmid,WRM0613dH07 -1 fosmid,WRM0636cH09 -1 fosmid,WRM0611aD08 -1 fosmid,WRM0626bG03 -1 fosmid,WRM062cA04 -1 fosmid,WRM067aG11 -1 fosmid,WRM0630cH04 -1 fosmid}

block4241 [novel_Multihit_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	9	1	3arm	14	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------CACACAC----------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------ACACACACACACACACACAAC---------	21	1
celegans	actgaagaaaatgtgtgtgagtatatgtgtgaagagccgccaacACACACACACACACACACAACtaactagtg
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F41H10.6c F41H10.6 F41H10.6
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F41H10.6a F41H10.6 F41H10.6
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F41H10.6b F41H10.6 F41H10.6
celegans	((((.......((((((((.((...((((((............))))))...)).))))))))......)))).	0.900 -19.32

celegans

chromosome:IV:5360178:5360251:-1

Same_strand|Intronic_coding|F41H10.6a|F41H10.6 ## F41H10.6|protein_coding|F41H10.6|Histone deacetylase 6 (EC 3.5.1.98). [Source:UniProtKB/Swiss-Prot;Acc:Q20296] ## {Repeats: trf 1 20 0 class=trf,dust 52229 52248 0 class=dust} ## {SimpF: WRM0612cF05 -1 fosmid,WRM061aH06 -1 fosmid}

block5259 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	31	-2	5arm_loop	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------CUAGCCG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------GCTAGCCGAGAAGAAAATAACA--------------------------------------------------------	22	1
celegans	agaaatcagattttatcctcgccgtctttccGCTAGCCGAGAAGAAAATAACAataaatttattttctcacaggttgtcggttttttttttttgaaaaatttgaattct
	*************************************************************************************************************
celegans	((((.(((((((((.((............(((.(((((....(((((((((........)))))))))....))))).)))............))))))))))).))))	0.980 -25.35

celegans

chromosome:IV:1972920:1973028:1

intergenic

block5049 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.428	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	12	5	3arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------UUUUUAU------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------TTTTTTATGGGTGGTCATTG------------	20	1
celegans	aaaaatatccgttgcacatattccataaagtaattttttgaatttggtaacagTTTTTTATGGGTGGTCATTGgtatgattttta
	*************************************************************************************
celegans	((((((..(((.((.((....(((((((((.((((.((..........)).)))))))))))))..)))).)))....)))))).	0.600 -12.60

celegans

chromosome:IV:16076375:16076459:-1

intergenic ## {SimpF: WRM0627aG02 -1 fosmid}

block310 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.759	no	no	0.46/0.48	25/26/0.00	0.0	0.3	3	0	1	0	33	-1	3arm	1	nd	0.32	3	3	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------UUUCAAG---------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------GTTTCAAGTGACATCATCCGACTCC----------------------------------	25	2
	-----------------------------------------------------------GTTTCAAGTGACATCATCCGACTCCT---------------------------------	26	1
celegans	ccttgcaaaataccagtgctgccgagaaaatcgtgagctgaatgaccatatgaagaatcGTTTCAAGTGACATCATCCGACTCCTttttgatcacagtaaccttgtgtagaatgaggt
	**********************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................	C17F3.3 C17F3.3 C17F3.3
celegans	((((.....((((.(((((((..((..(((....(((.((.((((.(((.(((((.....))))).)))...)))).)).)))...)))..)).)))))..)).)))).....)))).	0.740 -21.10

celegans

chromosome:I:6682324:6682441:-1

Opposite_strand|Boundary_non-coding|C17F3.3|C17F3.3 ## C17F3.3|protein_coding|C17F3.3|C17F3.3 [Source:RefSeq_peptide;Acc:NP_491917] ## {SimpF: WRM0612cD09 -1 fosmid,WRM0613cE07 -1 fosmid,WRM0636aD02 -1 fosmid,C17F3.3 -1 Expression_profile,WRM0626dH04 -1 fosmid}

block1078 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.244	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	20	0	5arm	2	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------UAUGCCA------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------GTATGCCATCTTGAGTGAG-------------------------------------------------	19	1
celegans	tccatgtagaagctcttgacGTATGCCATCTTGAGTGAGctgcaaaaatacttattccttcatgttacctatcgagggcgacatcggg
	****************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................................	C04F12.12 C04F12.12 C04F12.12
celegans	.((((((....((((((((.(((...(((...(((((((...........)))))))....))).)))...)))))))).)))).)).	0.890 -21.30

celegans

chromosome:I:9694997:9695084:1

Opposite_strand|Boundary_non-coding|C04F12.12|C04F12.12 ## C04F12.12|protein_coding|C04F12.12| ## {SimpF: WRM0630dC04 1 fosmid,WRM0612dG10 1 fosmid,WRM0637bB03 1 fosmid,WRM064dE10 1 fosmid,WRM0619bF10 1 fosmid}

block1518 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.219	no	no	0.57/0.57	23/23/1.00	0.0	0.0	1	0	1	0	6	24	3arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------UGCUGUG---------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------------GTGCTGTGAGTGTCGTCCATGCT------	23	1
celegans	ttttcatcaattggagcatccaacagtgagtgagccggcgccgagccattgagcattttatcgtcggattttgagctgctcgccGTGCTGTGAGTGTCGTCCATGCTgaaaat
	*****************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------	F56D12.6b F56D12.6 F56D12.6
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------	F56D12.6a F56D12.6 F56D12.6
celegans	((((((.((..(((((((..((.(((((.(((((.((((..(((.((..(((........)))..))...))).)))))))))..)))))))..)))..)))))).)))))).	0.820 -34.20

celegans

chromosome:II:1316836:1316948:-1

block7704 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.065	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	7	7	5arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	--------CUGUGUA----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------CCTGTGTAGCACAAGTCATC----------------------------------------------	20	1
celegans	tcacggaCCTGTGTAGCACAAGTCATCaaatccttattagcctttacacttgagcaataaatgggtttatgat
	*************************************************************************
celegans	(((..(((((.(((.((.(((((....(((..((....))..)))..))))).)).)))...)))))..))).	0.990 -15.50

celegans

chromosome:X:5004298:5004370:-1

intergenic ## {SimpF: WRM0639dB06 -1 fosmid,WRM0638bA04 -1 fosmid,WRM0622bC05 -1 fosmid,WRM0635bB10 -1 fosmid,WRM0628dF04 -1 fosmid,WRM0611dC05 -1 fosmid,WRM0630aC05 -1 fosmid,WRM0632bE03 -1 fosmid}

block4910 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.062	no	no	0.25/0.26	19/20/0.50	0.0	0.5	2	0	1	0	6	0	3arm	1	nd	0.10	1	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------UCAUUCU------------------	2	novel
		len	cloning frequencies
			CE1
	------------------------------------TTCATTCTTCAAATGTCTTT------	20	1
	------------------------------------TTCATTCTTCAAATGTCTT-------	19	1
celegans	ctttttaaatacgttttcgattgaaaatgaaaataaTTCATTCTTCAAATGTCTTTaaacag
	**************************************************************
celegans	((.((((((.((((......(((((((((((.....)))))).))))))))).)))))).))	0.980 -8.70

celegans

chromosome:IV:15277378:15277439:-1

intergenic ## {SimpF: WRM0626dG08 -1 fosmid,WRM0613cA05 -1 fosmid,WRM069aD04 -1 fosmid,WRM0615cG05 -1 fosmid}

block4699 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.111	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	0	5	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------GCACUCC------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------TGCACTCCAGCCAGACTTGG	20	1
celegans	taagttttaatgaatggacgttgaatagtattttaaTGCACTCCAGCCAGACTTGG
	********************************************************
celegans	((((((....((..(((((((((((......)))))))...))))..)))))))).	1.000 -11.40

celegans

chromosome:IV:13710227:13710282:-1

intergenic ## {SimpF: WRM0625dB04 -1 fosmid,WRM0638cF05 -1 fosmid,WRM0636cA04 -1 fosmid,WRM068cF11 -1 fosmid,WRM0636bD09 -1 fosmid}

block1551 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.503	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	1	8	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--CCAUACG----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-TCCATACGGTCATTTGAGTCT---------------------------------------------	21	1
celegans	cTCCATACGGTCATTTGAGTCTcaaccttgccatcgaggagggatacaataaaacttggttcagagg
	*******************************************************************
celegans	(((...(((((...(((.(((((..(((((....))))).))))).)))....)))..))...))).	0.960 -13.40

celegans

chromosome:II:2681486:2681552:-1

intergenic ## {SimpF: WRM0611cD10 -1 fosmid,WRM0620cA11 -1 fosmid,WRM0623cB01 -1 fosmid,WRM0641bB09 -1 fosmid,WRM0627bF12 -1 fosmid,WRM0612dF02 -1 fosmid,WRM0638aF08 -1 fosmid}

block2022 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.012	no	no	0.40/0.47	19/20/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	1 8	40 34	5arm 5arm	1 1	nd nd	0.55 0.21	7 3	2	1	na	na

		reads	miRBase family seed
seed	---------AGGAGUG--------------------------------------------------------------------------------------------------------	1	novel
seed	--UGGUAAU---------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------TAGGAGTGATGGTACGAAG---------------------------------------------------------------------------------------------	19	1
	-ATGGTAATAGGAGTGATGGT---------------------------------------------------------------------------------------------------	20	1
celegans	gATGGTAATAGGAGTGATGGTACGAAGagatggtattggaactgatggtaggaggtatttatgtttgacgtcctcctctgttggaagtggttctcttcgacatgattcttccttttttca
	************************************************************************************************************************
	...............................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----	F15D4.5 F15D4.5 F15D4.5
celegans	((.......((((((.(((...((((((((...((((....(((((((.((((((...(((....)))...))))))))))))).))))..)))))))).))).)))))).......)).	1.000 -35.34

celegans

chromosome:II:13247491:13247610:-1

intergenic ## {Repeats: trf 1 11 0 class=trf} ## {SimpF: WRM0636aG07 -1 fosmid,WRM0637cD09 -1 fosmid}

block6949 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.728	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	25	0	3arm	1	nd	0.38	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UAUAUAG--------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------GTATATAGAGTGTGACCACGT-------------------------	21	2
celegans	attgtaatattggatagccggctgagtggatgcttcttgcttaaaggtttGTATATAGAGTGTGACCACGTaacatgtcattatttaaaaagacaa
	************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------------------------------<<<	ZK228.11 ZK228.11 ZK228.11
celegans	.((((....((((((((..(((((.((((.((((((((((..........)))...)))).))).))))....)).))).))))))))....))))	0.920 -15.70

celegans

chromosome:V:18455798:18455893:-1

Opposite_strand|Intronic_non-coding|ZK228.11|ZK228.11 ## ZK228.11|pseudogene|ZK228.11| ## {SimpF: WRM0621cH01 -1 fosmid,WRM0610dC09 -1 fosmid}

block4659 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.361	no	no	0.50/0.50	20/20/1.00	0.0	0.0	2	0	1	0	14	15	5arm	2	nd	0.35	2	2	1	na	na

		reads	miRBase family seed
seed	---------------UUCAAUC------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------TTTCAATCGTTGGCAGTGGC------------------------------------------------------------------	20	2
celegans	ttgacaaaatttagTTTCAATCGTTGGCAGTGGCattggctggtggtgttcgagcagcatggcggacaaattgctgttggcggatgtcgggtggcggtca
	****************************************************************************************************
celegans	.((((...((((.....((.((((..(((((((..((.(((.(((.(((....))).)))))).))....)))))))..)))).))..))))....))))	0.440 -26.40

celegans

chromosome:IV:12639340:12639439:-1

intergenic ## {SimpF: WRM068bH03 -1 fosmid,WRM064cA08 -1 fosmid}

block4674 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.447	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	0	3	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------UGGUUUG-----------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------CTGGTTTGTGACGCAGAGC	19	1
celegans	gctttcgagcaagaaaatttgaatttcagCTGGTTTGTGACGCAGAGC
	************************************************
celegans	(((((((.(((((.....(((.....)))....)))))..)).)))))	0.990 -8.70

celegans

chromosome:IV:13208100:13208147:-1

intergenic ## {SimpF: WRM0613dC12 -1 fosmid,WRM0620dC10 -1 fosmid,WRM0613cG01 -1 fosmid,WRM0610cE07 -1 fosmid,WRM068aH12 -1 fosmid}

block8040 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.228	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	35	-2	5arm_loop	2	nd	0.48	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------UACGAGU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------ATACGAGTTGCAGTTGTTGTT--------------------------------------------------------	21	1
celegans	ttgttatcatatcgcttgtacttcttcttttctttATACGAGTTGCAGTTGTTGTTagttgatgacgaaacgagtgtgagtaggcgagtagaagccagggggggggagcagg
	****************************************************************************************************************
celegans	(((((.((...((.((((..(((((.(((.(((((((((..(((...((..(((.....)))..))..)))..))))))..))).))).))))).)))).)).)).))))).	0.440 -29.20

celegans

chromosome:X:16002920:16003031:-1

intergenic ## {SimpF: WRM0616bB09 -1 fosmid,WRM0619bA05 -1 fosmid}

block6146 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.037	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	25	1	5arm	1	nd	0.10	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------AGAAACA------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------TAGAAACAGTCGGAAAAAAGT-----------------------------------------------------------------------	21	1
celegans	tttcgagaactaatatgttaagcaaTAGAAACAGTCGGAAAAAAGTttccaaaattttttccttgacaaactccgattttctattttttaacgaaatattttactacttttcagaaa
	*********************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------------	Y105C5B.21a Y105C5B.21 jac-1
	-------------------------------------------------------------------------------------------------------------------------------	Y105C5B.21b.1 Y105C5B.21 jac-1
celegans	.((((((((..(((((((((((.((((((((..((((((((((((((.....))))))))...........)))))))))))))).))))))...))))).......))))).))).	0.680 -19.80

celegans

chromosome:IV:16025543:16025659:1

Opposite_strand|Intronic_non-coding|Y105C5B.21b.1|Y105C5B.21 ## Opposite_strand|Boundary_non-coding|Y105C5B.21b.2|Y105C5B.21 ## Opposite_strand|Intronic_coding|Y105C5B.21a|Y105C5B.21 ## Y105C5B.21|protein_coding|jac-1|jac-1 encodes the C. elegans p120 catenin orthologue. by homology, JAC-1 is predicted to be a component of the cadherin-catenin complex (CCC). although loss of jac-1 activity via RNAi does not result in obvious defects, jac-1(RNAi) does enhance embryonic morphogenesis defects produced by weak loss-of-function mutations in hmp-1/alpha-catenin, suggesting that JAC-1 positively regulates cadherin-catenin function in the embryo. JAC-1 likely regulates this function by promoting association between the actin cytoskeleton and the cadherin-catenin complex. a JAC-1 reporter fusion localizes to embryonic adherens junctions in a manner that is dependent upon the presence of HMR-1/cadherin, with which it specifically interacts in the yeast two-hybrid system. [Source: WormBase] ## {SimpF: WRM0613dE04 1 fosmid}

block5898 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.056	no	no	0.20/0.20	20/20/1.00	0.0	0.0	1	0	1	0	0	9	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UUUAUUA------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------TTTTATTAAAAGCAGAAACT	20	1
celegans	gtttcacagtctttgtttaatttgtagaacattatgtttcacatTTTTATTAAAAGCAGAAACT
	****************************************************************
	--------------------------------------------------------------------------	R05A10.3 R05A10.3 R05A10.3
celegans	(((((...((.((((...((..(((..(((.....)))..)))..))...)))).)).))))).	0.980 -10.40

celegans

chromosome:IV:14174815:14174878:1

Opposite_strand|Intronic_coding|R05A10.3|R05A10.3 ## R05A10.3|protein_coding|R05A10.3|R05A10.3 [Source:RefSeq_peptide;Acc:NP_502719] ## {SimpF: WRM0626cF11 1 fosmid,WRM0626aC09 1 fosmid,yk364e1 1 RNAi}

block1576 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.603	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	19	3	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------CAGAGUC----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------ACAGAGTCAACACAGGGTATT---------------------------------------------------------	21	1
celegans	gtgatggaaaccaccgaaaACAGAGTCAACACAGGGTATTtcgttagcgtggagcaagtactgactctggaatttagacggaacagttcttgaaacg
	*************************************************************************************************
celegans	((...((((....(((....((((((((..((...((.((.((....)).)).))..))..)))))))).........))).....))))....)).	0.610 -19.02

celegans

chromosome:II:3303360:3303456:-1

intergenic ## {SimpF: WRM0622bD02 -1 fosmid,WRM0637bB09 -1 fosmid,WRM0639dB12 -1 fosmid,WRM0628aD03 -1 fosmid}

block6451 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.427	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	29	3	5arm	25	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------AAAUAUA---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------CAAATATAGTGACTCTGGCCGTT------------------------------------------------------------------	23	1
celegans	caccaaatatagtgactctgaccgttcacCAAATATAGTGACTCTGGCCGTTcaccaaaaatagtgactctggccgttcaccaagtatagtgactctggccgttcaccaaatatagtg
	**********************************************************************************************************************
celegans	(((........((((...((.(((.((((...((((.((((...((((((.((((........))))...)))))).))))...)))).))))...))).)).))))........)))	0.690 -22.59

celegans

chromosome:V:5284924:5285041:-1

intergenic ## {Repeats: trf 101 124 0 class=trf,trf 1716 1739 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid,WRM066dC01 -1 fosmid}

block3971 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.105	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	24	2	5arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------CUGUGUG------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------GCTGTGTGTGATTTGTCT--------------------------------------------------------	18	1
celegans	gacgctgcaaatctccacgccatgGCTGTGTGTGATTTGTCTgaaaacttaaattaaattacgcaaaaattggtgaaaaagagaaaataaataggtta
	**************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................................................	Y76A2B.1 Y76A2B.1 pod-1
celegans	(((.(((....((((..(((((......(((((((((((..(((....)))...))))))))))).....))))).....)))).......)))))).	0.980 -19.20

celegans

chromosome:III:13523951:13524048:1

intergenic

block3195 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.575	no	no	0.31/0.32	22/26/0.50	0.0	2.0	2	0	1	0	0	7	3arm	1	nd	0.27	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUAGACA------------------	2	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------GTTAGACAGAGAAATTACGAAT----	22	1
	----------------------------------------------------------GTTAGACAGAGAAATTACGAATATTG	26	1
celegans	aataatcttaatagctccagttagattagttttcgttaccttagcttacgtgcgaaatGTTAGACAGAGAAATTACGAATATTG
	************************************************************************************
celegans	((((.((.((((..(((..(((.(((....((((((...............)))))).))).))).)))..)))).)).)))).	0.940 -12.26

celegans

chromosome:III:9748859:9748942:-1

intergenic ## {SimpF: WRM0611cA11 -1 fosmid,WRM0614bF09 -1 fosmid,WRM0613bB11 -1 fosmid,WRM0626aE07 -1 fosmid,WRM0611bB05 -1 fosmid,WRM0610bH10 -1 fosmid}

block513 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.076	no	no	0.11/0.11	18/18/0.00	0.0	0.0	1	0	1	0	4	30	5arm	1	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-----AUAAAAA------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GATAAAAATTATTTTTGA--------------------------------------------------------------------------------------------------	18	1
celegans	cctgGATAAAAATTATTTTTGAaagaatttcaacccgatagcttaaacaattttccagcaattgttcttcaagggttcatctaaaaacttgaaaattctttgaaaatatagttttttgga
	************************************************************************************************************************
celegans	((.....(((((((((((((.(((((((((((((((...((....(((((((.......)))))))))....)))).............))))).)))))).)))).))))))))).)).	0.450 -21.41

celegans

chromosome:I:11297782:11297901:-1

intergenic ## {SimpF: WRM0630dH11 -1 fosmid,WRM0625cG04 -1 fosmid,WRM0610aB04 -1 fosmid}

block8137 [novel_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.795	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	40	-3	5arm_loop	1	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------UGGAAAA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------ATGGAAAAGAAAAAAATCGA------------------------------------------------------------	20	1
celegans	ttcttaatccacaaacagtcgccagcttgcttcaattaaaATGGAAAAGAAAAAAATCGAatatgttacatttttttcttattagtattgcatgcgaaacaagagcgtcgtcgaagagaa
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F35H12.6 F35H12.6 F35H12.6
celegans	.((((..((.((.......(((...((((.(((.(((((.((.((.(((((((((((............))))))))))).)).)).))).))..))).)))).)))..)).)).)))).	0.410 -15.20

celegans

chromosome:X:913758:913877:1

Same_strand|Intronic_coding|F35H12.6|F35H12.6 ## F35H12.6|protein_coding|F35H12.6|F35H12.6 [Source:RefSeq_peptide;Acc:NP_741711] ## {SimpF: WRM0639bH02 1 fosmid,WRM069aE04 1 fosmid,WRM0633cH09 1 fosmid,WRM061bA04 1 fosmid,WRM0626cF08 1 fosmid}

sblock16 [novel_cloningOK_multiarm_DicerNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.027	no	no	0.38/0.59	22/24/1.00	0.0 0.0 0.0	0.0 0.0 0.0	1 2 2	0 0 0	1 1 1	0 0 0	2 30 9	17 3 26	5arm 3arm 3arm	1 1 1	nd nd nd	0.12 0.33 0.41	2 4 5	5	1	-17	-17

		reads	miRBase family seed
seed	----------------------------------------------------------------------------AGGACAG-----------------------	2	novel
seed	-----------------------------------------------------AGACAUG----------------------------------------------	2	novel
seed	---UUGAGUU------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------------------------------GAGGACAGCACGATCAGCCGTT---------	22	2
	----------------------------------------------------GAGACATGGTAGTATTTGGATTGG------------------------------	24	2
	--GTTGAGTTGATTGCTGTTCAATTG--------------------------------------------------------------------------------	24	1
celegans	taGTTGAGTTGATTGCTGTTCAATTGaaaattatctattctaaccatatttaGAGACATGGTAGTATTTGGATTGGAGGACAGCACGATCAGCCGTTaaaaactga
	**********************************************************************************************************
celegans	(((((..((((((((((((((((((.(((((((((..((((((......))))))....)))))).))).)))))...)))))))..)))))).......))))).	0.980 -26.40

celegans

chromosome:II:2615935:2616040:1

intergenic ## {SimpF: WRM0627bE01 1 fosmid,WRM0620bB07 1 fosmid}

block3478 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.113	no	no	0.50/0.50	20/20/1.00	0.0	0.0	3	0	1	0	12	9	3arm	1	nd	0.20	2	3	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GCUUUGU------------------------	3	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------TGCTTTGTGGCTTTGCTGGT------------	20	3
celegans	gctatcgagataataagcatttatggctacaatgtatacgcctctcaaaattacgttcacatTGCTTTGTGGCTTTGCTGGTaactcttttgcc
	**********************************************************************************************
celegans	((....(((.((...((((.....((((((((.(((.(((.............)))......))).)))))))).))))..)).)))....)).	0.990 -19.82

celegans

chromosome:III:3249145:3249238:1

intergenic

block1261 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.165	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	9	6	3arm	1	nd	0.11	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CUUGCAG--------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------GCTTGCAGTCGAAAAATTG---------	19	1
celegans	ctgtacttttagtagttttcaagctgcaaaaacttaaaattataactcacatttttacGCTTGCAGTCGAAAAATTGaaaaatagt
	**************************************************************************************
celegans	((((..(((((((..(((((..(((((((.....(((((.............)))))...))))))).)))))))))))).)))).	0.950 -12.42

celegans

chromosome:I:14220490:14220575:1

intergenic ## {SimpF: WRM0628dF11 1 fosmid}

block5158 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.038	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	1	31	5arm	1	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	--UAGAGCC------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-GTAGAGCCATGTCGTTGATTT-----------------------------------------------------------------------------------------	21	1
celegans	tGTAGAGCCATGTCGTTGATTTatgaagactgatttaatttgaagagtctatgaattcagataagatctctaaactaaatgagttggcacgtgtgacgatgtgaaatgcaa
	***************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------	Y116A8C.3 Y116A8C.3 Y116A8C.3
celegans	((((....((((((((((.....((..((((.(((((.(((..(((((((.((....))....))).))))))).))))).))))..))....))))))))))...)))).	1.000 -26.40

celegans

chromosome:IV:16918164:16918274:-1

Opposite_strand|Intronic_coding|Y116A8C.3|Y116A8C.3 ## Y116A8C.3|protein_coding|Y116A8C.3|Y116A8C.3 [Source:RefSeq_peptide;Acc:NP_503003] ## {SimpF: WRM0621dF01 -1 fosmid}

block1809 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.392	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	1	16	3arm	1	nd	0.19	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------UCACGUG--------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------TTCACGTGAGTTGCGGGTCTG-	21	1
celegans	cggttgctctcatttcatatgtgcgttttcaagaattgcatttacgtaacttaaatgttttggtgaaTTCACGTGAGTTGCGGGTCTGa
	*****************************************************************************************
celegans	(((..((((.((.(((((..(((.(((((((((....(((((((.......)))))))))))).)))).)))))))).)).))))))).	0.930 -18.10

celegans

chromosome:II:8276052:8276140:-1

intergenic ## {SimpF: WRM0634dB04 -1 fosmid,WRM0625bG03 -1 fosmid,WRM0614aF08 -1 fosmid,WRM0612dD10 -1 fosmid,WRM0624bG11 -1 fosmid,WRM0619bF12 -1 fosmid,WRM063dG12 -1 fosmid,WRM065cC06 -1 fosmid,WRM0639dG09 -1 fosmid,WRM0629cC06 -1 fosmid,WRM0631cB08 -1 fosmid,WRM067bE01 -1 fosmid,WRM0615aG04 -1 fosmid,WRM0641bG04 -1 fosmid,WRM0627cB10 -1 fosmid,WRM0621dD11 -1 fosmid,WRM0632bG11 -1 fosmid}

block807 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.321	no	no	0.64/0.64	22/22/1.00	0.0	0.0	1	0	1	0	26	-3	5arm_loop	1	21	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------GCUCUCG--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------GGCTCTCGCAGCACAAGGAGAC------------------------------------------------	22	1
celegans	atgaaaattccaaactaatgcttacaGGCTCTCGCAGCACAAGGAGACgatccggtggttgatgagcagaatccgatagttgctggatatttggca
	************************************************************************************************
	++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	C43E11.1 C43E11.1 cogc-5
celegans	.((.(((((((((((((.((.......((((...((((.((.(((.....)))..))))))..))))......)).)))))..)))).))))..))	0.760 -22.92

celegans

chromosome:I:4270895:4270990:1

Same_strand|Boundary_coding|C43E11.1|C43E11.1 ## C43E11.1|protein_coding|cogc-5|cogc-5 encodes an ortholog of mammalian COG-5, a subunit of lobe B of the conserved oligomeric Golgi complex (COGC). COGC-5 is also orthologous to Drosophila FOUR WAY STOP (required for fly spermatogenesis). COGC-5 is weakly required for normal gonadal distal tip cell migration, a process that also requires seven other orthologs of COGC subunits. like other lobe B subunits in both C. elegans and S. cerevisiae, COGC-5 is only partially required for normal function, while lobe A subunits are strongly required in either worms or yeast. [Source: WormBase] ## {SimpF: WRM0620aB02 1 fosmid,WRM0628aB01 1 fosmid,WRM0623bE09 1 fosmid,yk319b10 1 RNAi,WRM0611bC04 1 fosmid}

block1077 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.024	no	no	0.38/0.38	26/26/0.00	0.0	0.0	1	0	1	0	6	12	3arm	2	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CUCUUUA------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------GCTCTTTATTGAGTGTTCAAATCAGG------	26	1
celegans	caattccaatgatatcttgaacgtccattgatagcgtcgatagtcgcaaacttgcagttgacaaGCTCTTTATTGAGTGTTCAAATCAGGaaatga
	************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.........................................................................	C04F12.6 C04F12.6 C04F12.6
celegans	((.((((..((((...(((((((..((.(((.(((((((((....(((....))).))))))..)))..))).))..))))))))))))))).)).	0.980 -24.70

celegans

chromosome:I:9693744:9693839:1

intergenic ## {SimpF: WRM0630dC04 1 fosmid,WRM0612dG10 1 fosmid,WRM0637bB03 1 fosmid,WRM064dE10 1 fosmid,WRM0619bF10 1 fosmid}

block56 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.133	no	no	0.32/0.32	28/28/0.00	0.0	0.0	1	0	1	0	20	2	3arm	1	nd	0.11	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UUUGAAC----------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------TTTTGAACGTGAATAAGCTAGGAATTGT--------------------	28	1
celegans	ttttatgttttccgagtttttaaatggcaatttttagactttttggtgaataatttagatttatatgagaTTTTGAACGTGAATAAGCTAGGAATTGTtaaatttggaggttttaggg
	**********************************************************************************************************************
celegans	.((((...((((((((((......(((((((((((((.(((.((..((.....((((((.((......)).))))))))..)).))))))))))))))))))))))))))...)))).	0.920 -21.20

celegans

chromosome:I:1030507:1030624:-1

intergenic ## {SimpF: WRM0614aH12 1 fosmid,Y34D9A_151.B -1 Expression_profile}

block5518 [novel_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.168	no	no	0.38/0.48	21/21/1.00	0.9	0.9	7	0	1	0	4	1	3arm	1	nd	0.29	3	7	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------GGAGUUG-----------------	5	novel
seed	----------------------------------------------------------AUUGGAG--------------------	2	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------TGGAGTTGTTTCAGTCAGGTC----	21	5
	---------------------------------------------------------TATTGGAGTTGTTTCAGTCAG-------	21	2
celegans	gacacttttacccactgttttacgtattctattttcctcaactctattgaaatcaatTATTGGAGTTGTTTCAGTCAGGTCgtcc
	*************************************************************************************
	-----------------------------------------------------------------------------------------------	Y73B6BL.35 Y73B6BL.35 Y73B6BL.35
celegans	(((......(((.((((.....................((((((((.(((......))).))))))))...))))..))).))).	0.470 -12.65

celegans

chromosome:IV:6413188:6413272:1

Opposite_strand|Intronic_coding|Y73B6BL.35|Y73B6BL.35 ## Y73B6BL.35|protein_coding|Y73B6BL.35|Y73B6BL.35 [Source:RefSeq_peptide;Acc:NP_741424] ## {SimpF: WRM0631aB07 1 fosmid,WRM0614aD01 1 fosmid}

block2334 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.525	no	no	0.38/0.38	26/26/0.00	0.0	0.0	1	0	1	0	31	-1	3arm	1	nd	0.31	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AAUAGAU-------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------GAATAGATTGATGCGAAGATGAAAGC-------------------------------	26	1
celegans	gtcaggggttcgagtcccctaggtggcttgattttttgcagtctgaatattaacttaccccGAATAGATTGATGCGAAGATGAAAGCaactgtcgacaaggaaatatttgaaactgat
	**********************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...............................................................................................	F18C5.t1 F18C5.t1 F18C5.t1
celegans	(((((...(((((((..(((.(((.((((...((((((((.((....((((...........))))....))))))))))...)))).))).......)))....))))))).)))))	0.470 -25.20

celegans

chromosome:II:6565242:6565359:1

intergenic ## {SimpF: WRM0631cB07 1 fosmid,WRM0622cA11 1 fosmid,WRM0630dH09 1 fosmid,WRM0636cH03 1 fosmid,F18C5.5 1 Expression_profile,WRM068cB08 1 fosmid}

block704 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.301	no	no	0.12/0.12	24/24/1.00	0.0	0.0	2	0	1	0	30	4	3arm	1	nd	0.25	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------AUUCAAA----------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------GATTCAAAAAATAATGTAATAAAT------------------------------	24	2
celegans	gaaagacggagattattgttgcaacattaatattatgttcattttgaaaaaaatatattttcGATTCAAAAAATAATGTAATAAATaatttagttaacagttcgattctgactttt
	********************************************************************************************************************
celegans	(((((.(((((...((((((((...((((.(((((((((..(((((((..(((.....)))...)))))))...)))))))))..))))...)).))))))....))))).)))))	0.910 -16.60

celegans

chromosome:I:1657494:1657609:1

intergenic ## {SimpF: WRM0616dG01 1 fosmid}

block4270 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.047	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	6	12	5arm	1	nd	0.50	4	1	1	na	na

		reads	miRBase family seed
seed	-------AAUUGUG------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------TAATTGTGTTTTCTAGCAAA------------------------------------------------------	20	1
celegans	ggctagTAATTGTGTTTTCTAGCAAAaagtagtaaacttaaaagttttgcaacggtaggaattcagaaaaggcaaagcct
	********************************************************************************
	------------------------------------------------------------------------------------------	F26D12.1a F26D12.1 fkh-7
celegans	((((.((..((.((..((((.((.....((.(((((((....))))).)).)).)).))))..)).))...))..)))).	0.450 -16.10

celegans

chromosome:IV:5594344:5594423:-1

Opposite_strand|Boundary_non-coding|F26D12.1b|F26D12.1 ## Opposite_strand|Intronic_coding|F26D12.1a|F26D12.1 ## F26D12.1|protein_coding|fkh-7|fkh-7 encodes one of 15 forkhead transcriptional regulators encoded by the C. elegans genome. by homology, FKH-7 is predicted to function as a transcription factor that regulates gene expression during development. however, as loss of fkh-7 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of FKH-7 in C. elegans development and/or behavior is not yet known. however, reporter gene studies indicate that fkh-7 expression is detected only in neurons of the head and tail ganglia, the nerve cord, and the male tail, suggesting that FKH-7 likely functions in nervous system differentiation. [Source: WormBase] ## {SimpF: WRM0627bB10 -1 fosmid,WRM0618dB04 -1 fosmid,WRM063bD03 -1 fosmid,WRM0615dA02 -1 fosmid}

block4412 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.152	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	11	-2	3arm_loop	2	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AUGAUGA--------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------TATGATGAGTTCGGGCGATGATC-----------	23	1
celegans	agtcttcagtatgggtcaatctctgatctgcaactgaaTATGATGAGTTCGGGCGATGATCttctgtgatta
	************************************************************************
celegans	((((..(((...(((((.((((((((.((.((........))...)).))))).)))))))).))).)))).	0.880 -16.10

celegans

chromosome:IV:8428649:8428720:-1

intergenic ## {SimpF: T26A8.2 -1 Expression_profile,WRM0624dG01 -1 fosmid}

block6448 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.071	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	4	29	5arm	25	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----AAAUAUA------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----CAAATATAGTGACTCTGGCCGTT---------------------------------------------------------------------------------------------	23	1
celegans	tcacCAAATATAGTGACTCTGGCCGTTcaccaaaattagtgactctggctgttcaccagatatagtgactcggaccgttcaccaaaattagtgactctggccattcaccaagtatagtga
	************************************************************************************************************************
celegans	((((...((((.((((...((((((.((((........((((...((((((.((((........))))..))).))).))))........))))...)))))).))))...)))).))))	0.920 -29.29

celegans

chromosome:V:5284671:5284790:-1

intergenic ## {Repeats: trf 1490 1513 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0621bA04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid,WRM066dC01 -1 fosmid}

block6071 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.085	no	no	0.39/0.39	18/18/0.00	0.0	0.0	2	0	1	0	0	13	3arm	1	nd	0.35	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UCUAAUC----------	2	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------TTCTAATCGGTCTCAATC	18	2
celegans	attgtactgtttcaaattgttgttaagacaactgtttcttcttaccattcaaTTCTAATCGGTCTCAATC
	**********************************************************************
celegans	((((.((((.((..(((((.((.(((((...........))))).))..)))))..)).))))..)))).	1.000 -9.50

celegans

chromosome:IV:15495652:15495721:1

intergenic ## {SimpF: WRM0612dB03 1 fosmid}

block7466 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.589	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	17	2	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------UCUGACU------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------TTCTGACTGTTTCAAGATATC-----------------	21	1
celegans	gaactggttaattagatttagtggaatagcgagtagcaagctTTCTGACTGTTTCAAGATATCaatcttctcctttgtta
	********************************************************************************
celegans	.(((.((......(((((((.((((((((..((.((....))..))..))))))))...))..)))))...))...))).	0.880 -12.70

celegans

chromosome:V:16968806:16968885:1

intergenic

block5451 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.908	no	no	0.16/0.16	25/25/0.00	0.0	0.0	1	0	1	0	25	2	3arm	2	nd	0.24	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UUUAUUC------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------GTTTATTCAAAATTAAAGTTATCTT-------------------------	25	1
celegans	gcgacatctgtttaagtttcctgagaagctcatatttttaaaaattttggtaatttaacataatcaacaaGTTTATTCAAAATTAAAGTTATCTTctgtaaaggttgttggatgattgta
	************************************************************************************************************************
celegans	((((((((((.........(((.(((((.....(((((....((((((((.(((((............)))))...)))))))))))))...)))))....)))....)))))).)))).	0.450 -14.82

celegans

chromosome:IV:5384089:5384208:1

intergenic ## {SimpF: WRM0621dF11 1 fosmid,WRM0621cG07 1 fosmid,WRM0612cF05 1 fosmid,WRM0612dE10 1 fosmid,WRM061aH06 1 fosmid,WRM066cH08 1 fosmid,WRM0636bF04 1 fosmid,WRM0614bB03 1 fosmid}

block3841 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.650	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	23	-1	3arm	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------UACGAGU----------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------GTACGAGTTGGCGACCACT-----------------------	19	1
celegans	atctgaatgttgatcactggccggagacttttagccacGTACGAGTTGGCGACCACTgaaaaagatacattttttaaaga
	********************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------	T07C4.11 T07C4.11 T07C4.11
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------	T07C4.12 T07C4.12 T07C4.12
celegans	....((((((...(((.(((.((..(((((.((......)).)))))..)).))).))).......))))))........	0.690 -13.00

celegans

chromosome:III:10331567:10331646:1

Opposite_strand|Boundary_coding|T07C4.12|T07C4.12 ## Opposite_strand|Boundary_non-coding|T07C4.11|T07C4.11 ## T07C4.12|protein_coding|T07C4.12|T07C4.12 [Source:RefSeq_peptide;Acc:NP_001040872] ## T07C4.11|protein_coding|T07C4.11|T07C4.11 [Source:RefSeq_peptide;Acc:NP_001040871] ## {SimpF: CEOP3844 -1 Operon,WRM065aG10 1 fosmid,WRM0624bB02 1 fosmid,WRM0616cE05 1 fosmid}

block6387 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.149	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	12	-4	5arm_loop	1	nd	0.52	5	1	1	na	na

		reads	miRBase family seed
seed	-------------CAGAAUU----------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------GCAGAATTTGGAGGATTATCT---------------------------------------	21	1
celegans	cgggaacaagtgGCAGAATTTGGAGGATTATCTgaaaattgtttgaatggcttgaaggcttgggaaatctga
	************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------------------------	F36F12.7 F36F12.7 F36F12.7
celegans	((((..((((((((...(((..((.((((.......)))).))..))).))).....))))).....)))).	0.980 -14.20

celegans

chromosome:V:2099398:2099469:-1

Opposite_strand|Boundary_coding|F36F12.7|F36F12.7 ## F36F12.7|protein_coding|F36F12.7|F36F12.7 [Source:RefSeq_peptide;Acc:NP_503570] ## {SimpF: WRM0624cD07 -1 fosmid}

block3313 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.149	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	12	12	5arm	1	nd	0.23	2	1	1	na	na

		reads	miRBase family seed
seed	-------------UCGGCGA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------GTCGGCGAGTGTCTTCAGAAGG-------------------------------------------------------------------------	22	1
celegans	tgatttcttatcGTCGGCGAGTGTCTTCAGAAGGccaatgtagtttttgaatagaatatatggccggactgatggtttttgagctttttccggcggcttttcatcaa
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	Y75B8A.25 Y75B8A.25 Y75B8A.25
celegans	((((......(((((((((((..((.((((..((((.(((((.(((......))).)))))))))...)))).))..))))........)))))))......)))).	0.750 -27.40

celegans

chromosome:III:12276986:12277092:-1

block8088 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.069	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	22	-2	5arm_loop	4	nd	0.35	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------GAGUAUU------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------------------TGAGTATTCATTGGGTTGCC------------------------------------	20	2
celegans	gtttgctcagcctggagattgaTGAGTATTCATTGGGTTGCCatccaacccaatgtcttatgtcgatggtgtcgaaac
	******************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	C30G4.6 C30G4.6 C30G4.6
celegans	.((((....(((....(((..(((((....((((((((((.....)))))))))).))))))))...)))..))))..	0.900 -23.10

celegans

chromosome:X:17075405:17075482:-1

Same_strand|Intronic_coding|C30G4.6|C30G4.6 ## C30G4.6|protein_coding|C30G4.6|C30G4.6 [Source:RefSeq_peptide;Acc:NP_510760] ## {SimpF: WRM0635aF03 -1 fosmid,WRM0630bC01 -1 fosmid,WRM069dE11 -1 fosmid,WRM068dC05 -1 fosmid,WRM067bA08 -1 fosmid,WRM0621dF12 -1 fosmid,WRM0635bE05 -1 fosmid}

block5102 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.584	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	0	27	5arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-CAUGUUA---------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TCATGTTACGATTTTTCTCGG--------------------------------------------------------------------------------------	21	1
celegans	TCATGTTACGATTTTTCTCGGaaaaatatttcaagtaaagtttataaatgcgtttttttgtctaaattttaattagtttttttttcaaaaaaagtcaaattatgtgg
	***********************************************************************************************************
celegans	.(((((...(((((((....((((((.........(((((((((((((........)))))..)))))))).........))))))...))))))).....))))).	0.990 -13.57

celegans

chromosome:IV:16451685:16451791:-1

intergenic ## {SimpF: WRM0621bE04 -1 fosmid}

block5421 [novel_lenNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.46/0.46	26/26/0.00	0.0	0.0	3	0	1	0	4	6	5arm	2	nd	0.23	3	3	1	na	na

		reads	miRBase family seed
seed	-----UUUGCAA------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	----GTTTGCAACGTTCATCGCTTCAGTTG------------------------------------------------------	26	3
celegans	tattGTTTGCAACGTTCATCGCTTCAGTTGattagcttgctaaacaattgctgcttgattgagaactgatgatttgtgaacaat
	************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<......................................................................	F36H12.10 F36H12.10 F36H12.10
celegans	.((((((..(((...((((((.(((((((((.((((.............)))).)))))))))...)))))).)))..))))))	0.990 -25.12

celegans

chromosome:IV:5254711:5254794:1

Opposite_strand|Boundary_non-coding|F36H12.10|F36H12.10 ## F36H12.10|protein_coding|F36H12.10|F36H12.10 [Source:RefSeq_peptide;Acc:NP_500756] ## {SimpF: WRM0613dD04 1 fosmid}

block4273 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.219	no	no	0.20/0.20	20/20/1.00	0.0	0.0	1	0	1	0	8	0	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------UAUCUCA--------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------TTATCTCATAATTTTCTGAT--------	20	1
celegans	agatagtttttaaattgttatgatatgaaattagtttcgaTTATCTCATAATTTTCTGATacgctatt
	********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	C39H7.9 C39H7.9 srsx-16
celegans	.((((((..(((....(((((((.((((............)))).)))))))....)))...))))))	1.000 -8.90

celegans

chromosome:IV:5617094:5617161:-1

Same_strand|Intronic_coding|C39H7.9|C39H7.9 ## C39H7.9|protein_coding|srsx-16|Serpentine Receptor, class SX family member (srsx-16) [Source:RefSeq_peptide;Acc:NP_001023055] ## {SimpF: WRM0627bB10 -1 fosmid,WRM068bC07 -1 fosmid}

block3120 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.816	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	14	-1	5arm_loop	1	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	---------------UGUAUAA--------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------GTGTATAATGAGTCCATGTCG-------------------------------------------	21	1
celegans	ggaacagaggcatcGTGTATAATGAGTCCATGTCGaatgacgtgctccaaaatttcttcttgtgatgatccgaaaccc
	******************************************************************************
celegans	........((.(((((.(((((.(((..((((((....))))))...........))).)))))))))))).......	0.460 -13.52

celegans

chromosome:III:8191103:8191180:-1

intergenic ## {SimpF: WRM0625dD10 -1 fosmid,WRM0620cG02 -1 fosmid,WRM064aF08 -1 fosmid}

block4746 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.085	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	22	6	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUCGAGU--------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------TATCGAGTTTCTATACTT----------------------	18	1
celegans	tatatgaactacggttttatagtgtattgaaaagttgaaaattataggaatatgatTATCGAGTTTCTATACTTattgagaataattagaaatgta
	************************************************************************************************
celegans	(((((...(((..(((((.....((((.((((..((((.(((((((....))))))).)))).)))).))))......)))))...)))..)))))	0.710 -16.40

celegans

chromosome:IV:14098087:14098182:-1

intergenic ## {SimpF: WRM0639bE10 -1 fosmid,WRM0629cF09 -1 fosmid,WRM0635dF03 -1 fosmid,F52B11.4 -1 Expression_profile}

block1455 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.110	no	no	0.42/0.47	19/24/0.50	1.5	1.0	2	0	1	0	0	16	3arm	3	nd	0.42	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UUUGGAA----------------	1	novel
seed	------------------------------------------------------------GGAAGUU-------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------TGGAAGTTTCGGTTGTTGC--	19	1
	--------------------------------------------------------CTTTGGAAGTTTCGGTTGTTGCAT	24	1
celegans	ttgcgccgatccatagatattgctgatgattcgcgtcgaggcgcttgagtctgaagCTTTGGAAGTTTCGGTTGTTGCAT
	********************************************************************************
celegans	.((((((((((((........(((...(((((((((....))))..)))))...)))..))))....)))))....))).	0.950 -23.70

celegans

chromosome:I:15069043:15069122:1

intergenic ## {SimpF: WRM066aE11 1 fosmid,WRM067aB07 1 fosmid,WRM0628aC12 1 fosmid,WRM0637dE09 1 fosmid,WRM0640bG08 1 fosmid}

block7185 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.291	no	no	0.28/0.28	25/25/0.00	0.0	0.0	1	0	1	0	1	26	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AUAGAAA------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------GATAGAAATTTGAATAATGCTCAAC-	25	1
celegans	gttgaaattacagtaagcctatcactaacctcacatgctcagtttgactcgaaaagtcgcacgtacaaaaaacatgaactagGATAGAAATTTGAATAATGCTCAACa
	************************************************************************************************************
celegans	(((((.((((...((((.(((((.(((......((((.....((((((.(((....)))...)).))))...))))...))))))))...))))..))))..))))).	0.650 -16.10

celegans

chromosome:V:7731189:7731296:1

intergenic ## {SimpF: WRM061bB01 1 fosmid,WRM0636cH11 1 fosmid,WRM0632bE05 1 fosmid,WRM0633cE08 1 fosmid,WRM0624aH06 1 fosmid,WRM0637aH08 1 fosmid,WRM0611aE12 1 fosmid,WRM0636dD02 1 fosmid}

block970 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.383	no	no	0.29/0.29	24/24/1.00	0.0	0.0	1	0	1	0	29	-4	3arm_loop	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UUCGAAU---------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------CTTCGAATATATGTGTTTCAAACT-----------------------------	24	1
celegans	ggtattttagtatttccttcatttttggttaaaaataatagttgttcaaaatgtCTTCGAATATATGTGTTTCAAACTaatgcactacatgaaataatcaacgacca
	***********************************************************************************************************
celegans	(((.......((((((........((((((..(((((.....(((((...........)))))....)))))..))))))..........)))))).......))).	0.880 -14.71

celegans

chromosome:I:7115293:7115399:1

intergenic ## {SimpF: WRM0613dH10 1 fosmid,WRM0619bH05 1 fosmid,WRM0624dB12 1 fosmid,WRM0620bA10 1 fosmid,WRM0641dF02 1 fosmid,WRM0616cE06 1 fosmid,WRM0627dF04 1 fosmid}

block6711 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.609	no	no	0.23/0.23	22/22/1.00	0.0	0.0	1	0	1	0	18	2	5arm	1	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------AUACUGU--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------GATACTGTCAATTCAAAATTTT------------------------------------------------------	22	1
celegans	ctcttttattttctcagtGATACTGTCAATTCAAAATTTTgttggaataggatcccattgacaagggcggaatcaaatcgggaactgtcttgag
	**********************************************************************************************
	..............................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	F55A11.11 F55A11.11 F55A11.11
	>>>>>>>>>>>>>>>.........................................................................................	F55A11.7 F55A11.7 F55A11.7
celegans	(((.......(((((..((((.(((((...((((.(((((((....)))))))....))))....))))).))))....))))).......)))	0.750 -16.94

celegans

chromosome:V:11784472:11784565:-1

Opposite_strand|Boundary_non-coding|F55A11.11|F55A11.11 ## F55A11.11|protein_coding|F55A11.11|F55A11.11 encodes a member of the histidine phosphatase superfamily orthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736). F55A11.11 lacks the consensus sequence for phosphatase activity, and thus is predicted to be catalytically inactive. F55A11.11 is also paralogous to C. elegans C52E4.7, F09C12.8, F53B6.7, and T07F12.1. loss of F55A11.11 activity via large-scale RNAi results in no obvious defects. [Source: WormBase] ## {SimpF: F55A11.6 -1 Expression_profile,WRM0631cD03 -1 fosmid,WRM064dC03 -1 fosmid,WRM0610dE04 -1 fosmid,WRM0615cG08 -1 fosmid,WRM0611dE09 -1 fosmid}

block4149 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.230	no	no	0.22/0.22	18/18/0.00	0.0	0.0	1	0	1	0	28	3	5arm	3	nd	0.22	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UUUUGAG------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------GTTTTGAGTTTTTTGTTT--------------------------------------------------------	18	1
celegans	gtcctaatttcgatctcagaaaatagttGTTTTGAGTTTTTTGTTTtgttttgttttacagcaataaaagtgtaaattaattgagaatttagaaacaaggat
	******************************************************************************************************
	>>>>>>>>>>>>....................................................................................................	F29B9.10 F29B9.10 F29B9.10
celegans	(((((..((((..(((((.......((((.((((...((((((((((((........)))).))))))))..)))).))))))))).....))))..)))))	0.420 -17.21

celegans

chromosome:IV:4659019:4659120:-1

intergenic ## {Repeats: dust 23955 23973 0 class=dust} ## {SimpF: WRM0621cC02 -1 fosmid,WRM0627bD07 -1 fosmid,WRM0637aB09 -1 fosmid,WRM0629aB05 -1 fosmid,WRM0639aG12 -1 fosmid,WRM068dB06 -1 fosmid,F29B9.10 -1 Expression_profile,WRM065dC01 -1 fosmid,WRM0621aB11 -1 fosmid,WRM0618aF09 -1 fosmid}

block8461 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.077	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	11	26	3arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------------UUAUAAU---------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------------------------------------------ATTATAATAACGGTCGAA-----------	18	1
celegans	ctcttctttctttgattacttttatcctgtttatgcctccttttgccactttttgccacttcatacctcttctaatttcaggttcccATTATAATAACGGTCGAAataaggagaga
	********************************************************************************************************************
celegans	((((((((..(((((((....((((..((.....((((...............((......))................))))...))..))))....)))))))..)))))))).	0.470 -16.68

celegans

chromosome:X:9884133:9884248:1

intergenic ## {SimpF: WRM069aD01 1 fosmid,WRM0632cB05 1 fosmid,WRM0637dH10 1 fosmid,WRM0631dF04 1 fosmid,WRM0617dA08 1 fosmid,WRM0625cF08 1 fosmid,WRM0612cH11 1 fosmid,WRM063aH11 1 fosmid,WRM0619bB09 1 fosmid}

block76 [novel_lenNOK_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.137	no	no	0.36/0.36	25/28/0.00	0.0	0.0	6	0	1	0	25	-24	3arm	1	nd	0.46	8	7	1	na	na

		reads	miRBase family seed
seed	--------------------------AUCAAAG--------------------------------------	6	novel
seed	--------------------------------------AUCAGCC--------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------GATCAAAGAATGGATCAGCCATTGTTTT------------------	28	6
	-------------------------------------GATCAGCCATTGTTTTCAGAATTTG---------	25	1
celegans	ggatcatttttgactgggacagttgGATCAAAGAATGGATCAGCCATTGTTTTcagaatttgagaattcct
	***********************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............................	Y71G12B.3 Y71G12B.3 Y71G12B.3
celegans	(((..((((((((((((((((((..((((........))))....))))))).)))...))))))))))).	0.890 -14.70

celegans

chromosome:I:1812932:1813002:-1

Opposite_strand|Boundary_non-coding|Y71G12B.3|Y71G12B.3 ## Y71G12B.3|protein_coding|Y71G12B.3|Y71G12B.3 [Source:RefSeq_peptide;Acc:NP_490899] ## {SimpF: WRM0635cF03 -1 fosmid}

block5372 [novel_lenNOK_mirtron]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.274	no	no	0.26/0.26	19/19/0.00	0.0	0.0	2	0	1	0	10	6	5arm	1	2	0.21	3	2	1	na	na

		reads	miRBase family seed
seed	-----------GAUAGAA--------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------TGATAGAAGTAGATTTTAC---------------------------------------------------	19	2
celegans	atgataacaaTGATAGAAGTAGATTTTACagcttcacttgccggatgttttggagtctccatttatgcgattgcaatcaa
	********************************************************************************
	++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	Y9C9A.7 Y9C9A.7 str-153
celegans	.((((..((((((((((...((((((((.(((.((........)).))).))))))))...))))).)).)))..)))).	0.460 -13.60

celegans

chromosome:IV:4934954:4935033:1

Same_strand|Intronic_coding|Y9C9A.7|Y9C9A.7 ## Y9C9A.7|protein_coding|str-153|Seven TM Receptor family member (str-153) [Source:RefSeq_peptide;Acc:NP_500677] ## {SimpF: Y9C9A_54.D 1 Expression_profile}

block1702 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.116	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	10	-3	5arm_loop	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----------AUGAAAA----------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------GATGAAAAGCATTGAAGACG----------------------------	20	1
celegans	agaagaagacGATGAAAAGCATTGAAGACGtcttttgttgattggtggttctacttct
	**********************************************************
celegans	(((((.((((.((.((.((((..((((....))))))))..)).)).)).)).)))))	0.990 -12.20

celegans

chromosome:II:5758603:5758660:-1

intergenic ## {SimpF: WRM0634cF07 -1 fosmid,WRM067aH11 -1 fosmid,WRM0612bF07 -1 fosmid,F10C1.3 -1 Expression_profile,WRM0639cA03 -1 fosmid,WRM0611aA03 -1 fosmid}

block5914 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.828	no	no	0.44/0.45	18/20/0.67	0.0	0.7	3	0	1	0	11	5	5arm	1	nd	0.28	2	3	1	na	na

		reads	miRBase family seed
seed	------------AGACUAG----------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-----------TAGACTAGGCCCTTTTAGAG----------------------------------------------------	20	2
	-----------TAGACTAGGCCCTTTTAG------------------------------------------------------	18	1
celegans	gctaaaattaaTAGACTAGGCCCTTTTAGAGagagatagtgcttctaaaaccttgaaaaatgcttatcaaacataatttggtg
	***********************************************************************************
	..................................................<<<<<<<<<<<<<<<<<<<<<......................	Y64G10A.99 Y64G10A.99 21ur-4168
celegans	((((((.......((.(((((..((((.(((..(((.......))).....))).))))..)))))))........)))))).	0.680 -9.46

celegans

chromosome:IV:14298396:14298478:1

intergenic ## {SimpF: WRM0634bA12 1 fosmid,WRM0618cA09 1 fosmid,WRM0610dE08 1 fosmid}

block7068 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.070	no	no	0.22/0.22	18/18/0.00	0.0	0.0	1	0	1	0	17	14	5arm	3	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------------------UUUUGAG------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------GTTTTGAGTTTTTTGTTT--------------------------------------------------------------------------	18	1
celegans	tgctagtttgtttcgaaGTTTTGAGTTTTTTGTTTcaattcgttttgtggtgccgaaaatgcacaaaaaattgaaaaacggatttgctgaaaatttgaattttgggcaa
	*************************************************************************************************************
celegans	((((.......(((.(((((((.(((..((((((((((((..(((((((............))))))))))))))..)))))...))).)))))))))).....)))).	1.000 -24.40

celegans

chromosome:V:1967403:1967511:1

intergenic ## {SimpF: WRM0638aE01 1 fosmid,WRM066aF01 1 fosmid,WRM0630cF10 1 fosmid}

block5885 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.634	no	no	0.53/0.55	19/20/0.50	0.0	0.5	2	0	1	0	0	16	3arm	1	nd	0.26	1	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UGAUAUA------------	2	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------CTGATATAATGGCGCCGAC-	19	1
	------------------------------------------------------CTGATATAATGGCGCCGACG	20	1
celegans	gtggttcactgtttcagcatcgtgttatttatgcctttgtattttacgtttcaaCTGATATAATGGCGCCGACG
	**************************************************************************
	------------------------------------------------------------------------------------	Y37A1B.10 Y37A1B.10 srw-63
celegans	((((((((.(((.((((...((((......((((....))))..))))......)))).))).))).))).)).	0.630 -12.00

celegans

chromosome:IV:14014808:14014881:1

Opposite_strand|Intronic_coding|Y37A1B.10|Y37A1B.10 ## Y37A1B.10|protein_coding|srw-63|Serpentine Receptor, class W family member (srw-63) [Source:RefSeq_peptide;Acc:NP_502686] ## {SimpF: WRM0634bF10 1 fosmid,WRM0631dC06 1 fosmid,WRM0619dE12 1 fosmid,WRM067bC04 1 fosmid}

block4095 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.372	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	22	0	5arm	3	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------AGAUUGA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------GAGATTGATTGGCAGTCAATT---------------------------------------------------------	21	1
celegans	gggagattggtggcgatggtggGAGATTGATTGGCAGTCAATTaaagcaaatcgactctggccaaatcatactcaacgactccggcgtccgagctcactg
	****************************************************************************************************
	.............................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	F42A6.3 F42A6.3 F42A6.3
celegans	(((((.((((((.((..(((..(((..((((((((((((.(((......))).))))...))))).)))..)))....))).)).)).)))).))).)).	0.510 -27.50

celegans

chromosome:IV:3324919:3325018:-1

intergenic ## {SimpF: WRM0626dG12 -1 fosmid}

block7078 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.078	no	no	0.16/0.16	19/19/0.00	0.0	0.0	2	0	1	0	19	18	5arm	1	nd	0.42	4	2	1	na	na

		reads	miRBase family seed
seed	--------------------UUAGUUC------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------TTTAGTTCATTTTTTTTTC-------------------------------------------------------------------	19	2
celegans	cggggcctctggaaacattTTTAGTTCATTTTTTTTTCagatttacacgtggtgctgccaggcattacggtttgatctacaaaaaatgcgggaatttttcatcct
	*********************************************************************************************************
	<<<<<<<<<<<<<------------------------------------------------------------------------------------------------------	Y45G12B.3 Y45G12B.3 Y45G12B.3
celegans	.((((....((((((.((((((....((((((((....(((((.((.(((((((((....)))))))))))..)))))..)))))))).))))))))))))))))	0.450 -25.70

celegans

chromosome:V:2688798:2688902:1

Opposite_strand|Intronic_coding|Y45G12B.3|Y45G12B.3 ## Y45G12B.3|protein_coding|Y45G12B.3|L-2-hydroxyglutarate dehydrogenase, mitochondrial precursor (EC 1.1.99.2). [Source:UniProtKB/Swiss-Prot;Acc:Q9N4Z0] ## {Repeats: dust 64491 64499 0 class=dust}

block5057 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.32/0.38	19/21/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	5 9	20 14	5arm 5arm	2 2	nd nd	0.37 0.33	4 3	2	1	na	na

		reads	miRBase family seed
seed	------UGAUGAC------------------------------------------------------------------------------	1	novel
seed	----------GACAAUG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----TTGATGACAATGGTTTATG-------------------------------------------------------------------	19	1
	---------TGACAATGGTTTATGAACGGT-------------------------------------------------------------	21	1
celegans	gaaaaTTGATGACAATGGTTTATGAACGGTtatttttccaaaatgttattttgggaatttatagtttaaaacgcttctctgtagaattttt
	*******************************************************************************************
celegans	(((((((....(((..(((((.(((((...((..((((((((((...))))))))))..))..))))).)).)))....)))..)))))))	0.650 -15.00

celegans

chromosome:IV:16108932:16109022:-1

intergenic ## {SimpF: WRM0625bD07 -1 fosmid}

block8182 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.711	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	20	8	5arm	1	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------UUUUGUC----------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------GTTTTGTCCAGCTTCAACGTT---------------------------------------------------------------	21	2
celegans	tcaatgtcttggccattccaGTTTTGTCCAGCTTCAACGTTccaaactgttgcacattctagagtttgaagtatcgacttgatgggaatctggaaaaatatcga
	********************************************************************************************************
celegans	((.((((.((..(((((((.(((..(((..(((((((...((.....((.....)).....))..)))))))...)))..))).))))..)))..)))))).))	0.830 -18.50

celegans

chromosome:X:1958855:1958958:1

intergenic ## {SimpF: WRM067dE01 1 fosmid,WRM0623dH03 1 fosmid,WRM0637cF04 1 fosmid,WRM0610aD12 1 fosmid,WRM0612dC06 1 fosmid,WRM0626aA05 1 fosmid}

block2204 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.175	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	10	12	5arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	-----------UAUGAAA------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------ATATGAAAGTGTCAGTGACT------------------------------------------------------	20	1
celegans	aggaaaatgtATATGAAAGTGTCAGTGACTtatcaaaatagcatatgcgttgttgcatgactcttggtgttgtatgcaaaagcc
	************************************************************************************
	----------------------------------------------------------------------------------------------	F39E9.6 F39E9.6 F39E9.6
celegans	.((....((((((((((((.(((((((((...........((....))...))))).)))).)))....)))))))))....))	0.600 -16.94

celegans

chromosome:II:3310553:3310636:1

Opposite_strand|Intronic_coding|F39E9.6|F39E9.6 ## F39E9.6|protein_coding|F39E9.6|F39E9.6 encodes a neprilysin. neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them. F39E9.6 has no clear orthologs in other organisms. [Source: WormBase] ## {SimpF: F39E9.6 1 Expression_profile,WRM0639dB12 1 fosmid,WRM0622bD02 1 fosmid,WRM0622bE10 1 fosmid}

block707 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.042	no	no	0.33/0.40	21/25/0.11	0.0	0.0	8	0	1	0	13	11	5arm	1	nd	0.36	4	9	1	na	na

		reads	miRBase family seed
seed	--------------AUGUUAA----------------------------------------------------------------------------	9	novel
		len	cloning frequencies
			CE1
	-------------GATGTTAATTGTACGACAAGTAGGG-----------------------------------------------------------	25	8
	-------------GATGTTAATTGTACGACAAGT---------------------------------------------------------------	21	1
celegans	actcttattcttcGATGTTAATTGTACGACAAGTAGGGaatgaatgattgttgaggagttttggaaatgttgttggaacaattaggaagaggggggg
	*************************************************************************************************
celegans	.((((..((((((....((((((((.((((((.((......((((..((....))..))))......))))))))..))))))))))))))..))))	0.950 -20.30

celegans

chromosome:I:1798656:1798752:1

intergenic ## {SimpF: Y71G12A_203.A 1 Expression_profile}

block2389 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.125	no	no	0.35/0.35	26/26/0.00	0.0	0.0	1	0	1	0	3	23	3arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------AAUUGAG---------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------------GAATTGAGGTTTTTGCAAGGAAAATC---	26	1
celegans	ttgatttacagctagtgggtgccaacagtttaaaggagtcacagaaaaagtgtaaaaattatacacgagggatttaaaaaaattGAATTGAGGTTTTTGCAAGGAAAATCaga
	*****************************************************************************************************************
celegans	(((((((....((.(((((.(((..((((((((..(((((.........(((((.......)))))....))))).......)))))))).))).))))).))..))))))).	0.760 -18.22

celegans

chromosome:II:7873937:7874049:1

intergenic ## {SimpF: WRM0620aH01 1 fosmid,WRM0621cG05 1 fosmid,WRM0627aG05 1 fosmid,WRM0636cB08 1 fosmid,WRM062bA04 1 fosmid,WRM0635aB03 1 fosmid,WRM0641bF08 1 fosmid}

block2125 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.723	no	no	0.36/0.37	19/22/0.67	0.0	1.0	3	0	1	0	8	8	5arm	1	nd	0.26	3	3	1	na	na

		reads	miRBase family seed
seed	---------UUCCAAG----------------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	--------GTTCCAAGATGTTGATTTGATG--------------------------------------------------------------------	22	2
	--------GTTCCAAGATGTTGATTTG-----------------------------------------------------------------------	19	1
celegans	gtctcattGTTCCAAGATGTTGATTTGATGaagactgattatttactcttttctatctctatttatatcaaaatttgcccttatctttgccccagatc
	**************************************************************************************************
	<<<<<<<<<<<<................................................................................................	F46F5.9 F46F5.9 F46F5.9
celegans	((((....((...(((((((((((..((((.(((..((.............))..))).))))...)))))..........)))))).))...)))).	0.530 -9.02

celegans

chromosome:II:822830:822927:1

intergenic ## {SimpF: WRM0622dC12 1 fosmid,WRM0626dE09 1 fosmid,WRM0627cG11 1 fosmid,F46F5.9 1 Expression_profile,WRM0638dH08 1 fosmid,WRM067dE12 1 fosmid,WRM0626dF08 1 fosmid,WRM0618cG04 1 fosmid,WRM063cA07 1 fosmid,WRM069bC02 1 fosmid}

block1730 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.203	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	21	2	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------CAUCAUA----------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------CCATCATAGCTGACGTACAAG---------------------	21	1
celegans	tgtgtgaacgtttaattggtcagttggaaagattttaacttgtCCATCATAGCTGACGTACAAGaaaacaattgttctttctacg
	*************************************************************************************
celegans	.(((.((((((((..(((((((((((((..(((........)))..)).))))))))...)))..))))....))))....))).	0.710 -16.50

celegans

chromosome:II:6342843:6342927:-1

intergenic ## {SimpF: WRM0617aE11 -1 fosmid,WRM0611bE09 -1 fosmid,WRM0632aH03 -1 fosmid,WRM0628aA10 -1 fosmid,WRM0615bE03 -1 fosmid,WRM068aG10 -1 fosmid,WRM0629dA05 -1 fosmid}

block7519 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.861	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	11	22	5arm	1	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	------------UUGACAU-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------GTTGACATGCTTCGGAGTGGTT-----------------------------------------------------------------------------------	22	1
celegans	tttcgatggtcGTTGACATGCTTCGGAGTGGTTattcgttcaatatcaagtacggtacgccgagttcgagggttcctgagagaaattcacgattaagcagtaattccagtacggaa
	********************************************************************************************************************
celegans	.((((.(((..((((...(((((....((((...(((.((((..(((.((..(((....)))..))....)))...)))).)))..))))....))))).)))).)))...)))).	0.420 -23.60

celegans

chromosome:V:18402262:18402377:1

intergenic ## {SimpF: WRM0620dA09 1 fosmid,WRM0621cH01 1 fosmid}

block6258 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.397	no	no	0.36/0.36	25/25/0.00	0.0	0.0	2	0	1	0	6	12	5arm	2	nd	0.24	2	2	1	na	na

		reads	miRBase family seed
seed	-------UAAAGGU------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	------GTAAAGGTTGTTGGATGATTGTATG-------------------------------------------------------------	25	2
celegans	tcttctGTAAAGGTTGTTGGATGATTGTATGagtccgagaagcacttgagccactaggaacgtgctaggaatgcagcgggtttgcattgaag
	********************************************************************************************
celegans	.(((((((.(((.((((((.((..(((((((..(((.((..((......))..)).))).))))).))..)).)))))).))))))..))))	0.990 -22.30

celegans

chromosome:IV:16930175:16930266:1

intergenic ## {SimpF: WRM0621dF01 1 fosmid}

block3784 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.360	no	no	0.19/0.19	26/26/0.00	0.0	0.0	2	0	1	0	3	20	5arm	1	nd	0.35	4	2	1	na	na

		reads	miRBase family seed
seed	----UUUUAUG------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	---GTTTTATGTTTATGGTTTAATTAAGT------------------------------------------------------------------------------	26	2
celegans	tttGTTTTATGTTTATGGTTTAATTAAGTatttaaataaaaaaagtttatatttattgaatgaaattgtttttcaaatacgtgaacttgaacttcaacactacagat
	***********************************************************************************************************
celegans	(((((....((((...(((((((((..((((((((((((.....(((((.......)))))....))))))...))))))...)).)))))))..))))..))))).	0.630 -14.50

celegans

chromosome:III:9145814:9145920:1

intergenic ## {SimpF: WRM063aE09 1 fosmid,WRM0632bD09 1 fosmid,WRM0623aF12 1 fosmid,WRM0629dA07 1 fosmid,WRM0611aH11 1 fosmid,WRM0628aC02 1 fosmid}

block5402 [novel_lenNOK_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.289	no	no	0.46/0.46	24/26/0.20	0.0	0.0	4	0	1	0	20	-6	5arm_loop	1	nd	0.46	6	5	1	na	na

		reads	miRBase family seed
seed	---------------------CAAUGAG------------------------------------------------------	5	novel
		len	cloning frequencies
			CE1
	--------------------GCAATGAGTTGAGTTGTCTCTTGGCT------------------------------------	26	4
	--------------------GCAATGAGTTGAGTTGTCTCTTGG--------------------------------------	24	1
celegans	ttattggaaatatggcaaaaGCAATGAGTTGAGTTGTCTCTTGGCTgagtactggctcttcttgtgtcgatcttcttatggt
	**********************************************************************************
	................................................................................<<<<<<<<<<<<	C24D10.8 C24D10.8 nspd-6
celegans	((((.((((...(((((.(((.((.(((((.(((...(((......))).))))))))))))).)))))...)))).)))).	0.860 -17.70

celegans

chromosome:IV:5165426:5165507:1

intergenic ## {SimpF: WRM0633dC11 1 fosmid,C24D10.8 1 Expression_profile}

block2914 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.150	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	6	6	5arm	1	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	-------GAUUCCA-------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------TGATTCCATTGAAACGAGGACGG----------------------------------------------	23	1
celegans	tttgtgTGATTCCATTGAAACGAGGACGGaaaatcataaaaagatgactgatttcaattcgaatgaaacaaacaa
	***************************************************************************
	-------------------------------------------------------------------------------------	M88.7 M88.7 M88.7
	................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	M88.3 M88.3 M88.3
celegans	.((((.((.(((..(((((..((((.(((...(((.......)))..))).))))..)))))..))).)).))))	0.970 -11.50

celegans

chromosome:III:4544910:4544984:-1

Opposite_strand|Intronic_coding|M88.7|M88.7 ## M88.7|protein_coding|M88.7|M88.7 [Source:RefSeq_peptide;Acc:NP_497920] ## {SimpF: WRM0640cE01 -1 fosmid,WRM0625cB01 -1 fosmid,WRM0618aF05 -1 fosmid,WRM0627cC04 -1 fosmid,WRM0624dG04 -1 fosmid,WRM0622dB10 -1 fosmid,WRM0631cD12 -1 fosmid,WRM0626cG09 -1 fosmid,WRM061bH07 -1 fosmid,WRM0611dC02 -1 fosmid,M88.3 -1 Expression_profile}

block7467 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	0	11	3arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------CACAUGC-----------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------ACACATGCAACGTCTCGGC	19	1
celegans	gcccgcgtaagcatcatagtttctgacattaataaactattttttcagACACATGCAACGTCTCGGC
	*******************************************************************
celegans	(((.((((..((((....((.(((((....((((...))))...))))).)))))).))))...)))	0.780 -12.90

celegans

chromosome:V:17069622:17069688:1

intergenic ## {SimpF: WRM0615aG02 1 fosmid,WRM0636dH06 1 fosmid,WRM0619bF01 1 fosmid,WRM0614cA06 1 fosmid,WRM0612aF04 1 fosmid,WRM0635dG10 1 fosmid,WRM0641cE12 1 fosmid,WRM0621aD01 1 fosmid,WRM067aD09 1 fosmid,WRM0629cH07 1 fosmid,WRM0629bB03 1 fosmid}

block1145 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.666	no	no	0.28/0.38	18/26/0.00	0.0	5.0	3	0	1	0	18	-10	5arm_loop_3arm	2	nd	0.39	3	3	1	na	na

		reads	miRBase family seed
seed	-------------------AUAAAUA----------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	------------------GATAAATAGTGAATCGATACACTCC-----------------------------------	25	1
	------------------GATAAATAGTGAATCGATACACTCCG----------------------------------	26	1
	------------------GATAAATAGTGAATCGAT------------------------------------------	18	1
celegans	cattatgaatatgttgtaGATAAATAGTGAATCGATACACTCCGccatcagttgatttgtttaataagcaggtagtgt
	******************************************************************************
	<<<<<<<<................................................................................	F46A8.6 F46A8.6 F46A8.6
celegans	((((((.....((((.(((((((((..(((..((........))...)))....)))))))))...)))).)))))).	0.600 -11.40

celegans

chromosome:I:11244993:11245070:1

intergenic ## {SimpF: F46A8.6 1 Expression_profile,WRM0637aG08 1 fosmid}

block901 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.292	no	no	0.42/0.42	24/24/1.00	0.0	0.0	1	0	1	0	16	-1	5arm_loop	1	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------UAAGACG------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------GTAAGACGGCAGGTATATTTAGTG--------------------------------------------	24	1
celegans	tggtagttcaagaattGTAAGACGGCAGGTATATTTAGTGaacggacttcatgtacttctctgtgaatgcaagatgagccagct
	************************************************************************************
	.......................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	ZK484.7 ZK484.7 ZK484.7
celegans	.(((.(((((....(((((..((((.((((((((..(((......)))..))))))))..))))...)))))..)))))..)))	1.000 -18.60

celegans

chromosome:I:6095099:6095182:1

Opposite_strand|Boundary_non-coding|ZK484.7|ZK484.7 ## ZK484.7|protein_coding|ZK484.7|ZK484.7 [Source:RefSeq_peptide;Acc:NP_491758] ## {SimpF: WRM0627cE01 1 fosmid,WRM0640cD10 1 fosmid,WRM0623cH06 1 fosmid}

block4827 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.190	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	35	-4	3arm_loop	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------CAUCUCA---------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------TCATCTCAAAATTGAAGC-----------------------------------	18	1
celegans	ggtttcagaatatttttatcagagttcgagattttcaatttttttagTCATCTCAAAATTGAAGCaggtaaacatcgatctgaaaattgtactcgaatcc
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	Y57G11C.2 Y57G11C.2 lgc-7
celegans	((.(((.((.(((..((.(((((..((((.((((((((((((...((....)).))))))))))...)).....))))))))).))..))).))))).))	0.880 -17.00

celegans

chromosome:IV:14712508:14712607:-1

Opposite_strand|Intronic_coding|Y57G11C.2|Y57G11C.2 ## Y57G11C.2|protein_coding|lgc-7|Y57G11C.2 [Source:RefSeq_peptide;Acc:NP_502777] ## {Repeats: Ce000433 917 923 -1 class=___LONGPAL3_DNA/MuDR___AT_rich_Low_complexity} ## {SimpF: Y57G11C.2 -1 Expression_profile,WRM0620bA12 -1 fosmid}

block2541 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.167	no	no	0.33/0.33	21/21/1.00	0.0	0.0	2	0	1	0	5	7	3arm	1	nd	0.29	3	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------UUUGUUC------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------GTTTGTTCGCTTGAATACTAT-----	21	2
celegans	aaagggatgcctttgagcactgagctataacttgatagacctgattactcgacaaGTTTGTTCGCTTGAATACTATtcttt
	*********************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................................	C07E3.4 C07E3.4 C07E3.4
celegans	.((((((((..((..(((...((((...((((((...((.........))..)))))).)))))))..))...))))))))	1.000 -17.40

celegans

chromosome:II:10362807:10362887:1

intergenic ## {SimpF: WRM0640dD10 1 fosmid,WRM067cH01 1 fosmid,WRM0617bG10 1 fosmid,C07E3.4 1 Expression_profile,WRM0620bE09 1 fosmid}

block7217 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.151	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	4	3	5arm	4	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----GGAAGUG-------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GGGAAGTGGCAGAGTGACC--------------------------------	19	1
celegans	atggGGGAAGTGGCAGAGTGACCaagaaaaactatgcactttgtacattcggcat
	*******************************************************
celegans	......(((...((((((((....((.....))...))))))))...))).....	1.000 -12.00

celegans

chromosome:V:8850254:8850308:1

intergenic ## {SimpF: WRM0612bC01 1 fosmid,WRM0620cD11 1 fosmid,WRM0615bD11 1 fosmid,WRM067aB04 1 fosmid,WRM0632cD08 1 fosmid,WRM0626cH02 1 fosmid,WRM0632aF08 1 fosmid,WRM0639cH11 1 fosmid,WRM0615bG03 1 fosmid,WRM0628dF12 1 fosmid}

block7071 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.631	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	2	14	5arm	1	nd	0.44	3	1	1	na	na

		reads	miRBase family seed
seed	---AGAUAAC----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GAGATAACCAAGAATAAA------------------------------------------------------------	18	1
celegans	acGAGATAACCAAGAATAAAgtattgaagcatcgtgttcggaactcaatcgatcaaacaataaattattgattattgcga
	********************************************************************************
celegans	.((..((((.((...((((..(((((....((((...............))))....)))))..)))))).))))..)).	0.840 -9.06

celegans

chromosome:V:2083781:2083860:1

intergenic ## {SimpF: yk278f5 1 RNAi}

block2763 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.091	no	no	0.57/0.57	21/21/1.00	0.0	0.0	2	0	1	0	32	-4	5arm_loop	4	nd	0.48	5	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------UGGUCAA---------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------GTGGTCAATGTCGAAGAGGCG--------------------------------------------------------	21	2
celegans	aatggaaggatgaggtggtttagtggacgcttGTGGTCAATGTCGAAGAGGCGacggatctgtacgactctgaaaacatattgttatgaataatttcatttttgagttc
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	W05G11.2 W05G11.2 W05G11.2
celegans	(((..(((((((((((.(((((...((((..(((..(((..((((.(((.........)))...))))..)))..)))...)))).))))).)))))))))))..))).	0.990 -26.30

celegans

chromosome:III:57781:57889:-1

Opposite_strand|Intronic_coding|W05G11.2|W05G11.2 ## W05G11.2|protein_coding|W05G11.2|W05G11.2 [Source:RefSeq_peptide;Acc:NP_497132] ## {SimpF: W05G11.2 -1 Expression_profile}

block7221 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.151	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	4	3	5arm	4	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----GGAAGUG-------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GGGAAGTGGCAGAGTGACC--------------------------------	19	1
celegans	atggGGGAAGTGGCAGAGTGACCaagaaaaactatgcactttgtacattcggcat
	*******************************************************
celegans	......(((...((((((((....((.....))...))))))))...))).....	1.000 -12.00

celegans

chromosome:V:8892349:8892403:1

intergenic ## {SimpF: WRM0620dF01 1 fosmid,WRM0630cG07 1 fosmid,WRM0614aB05 1 fosmid,WRM064dE05 1 fosmid,WRM0632cD08 1 fosmid,WRM0627bB06 1 fosmid,WRM0632aF08 1 fosmid,WRM0627cF05 1 fosmid,WRM0614bC01 1 fosmid,WRM063bH07 1 fosmid,WRM0638aA04 1 fosmid,WRM0625aH11 1 fosmid,WRM0626cG01 1 fosmid,WRM0628bC09 1 fosmid}

block5409 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.207	no	no	0.48/0.52	21/25/0.33	0.0 0.0	0.0 0.0	2 1	0 0	1 1	0 0	2 12	7 1	5arm 5arm	2 2	nd nd	0.36 0.33	3 4	3	1	na	na

		reads	miRBase family seed
seed	---CAGCAAA--------------------------------------------------------------------	2	novel
seed	-------------ACAUGCA----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GCAGCAAAGTGACATGCAGATAGTC---------------------------------------------------	25	2
	------------GACATGCAGATAGTCCAACGG---------------------------------------------	21	1
celegans	gaGCAGCAAAGTGACATGCAGATAGTCCAACGGgctcatcatatttccgtcgttttgtcgcgtttatacgatgtgctt
	******************************************************************************
celegans	(((((.((..(((..((((.(((((....(((((...........)))))....)))))))))...)))..)))))))	0.500 -17.60

celegans

chromosome:IV:5217597:5217674:1

intergenic ## {SimpF: WRM0616bF04 1 fosmid,WRM0632cH10 1 fosmid,yk578d4 1 RNAi,WRM067dF01 1 fosmid}

block6033 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.211	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	10	7	5arm	1	nd	0.24	2	2	1	na	na

		reads	miRBase family seed
seed	-----------CUUUUUU----------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------TCTTTTTTGGGTGAGCATGTT---------------------------------------------------	21	2
celegans	tcaattacacTCTTTTTTGGGTGAGCATGTTtttacatacataatttatacgcatagtacagtcagaacagacagaaattga
	**********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y40H7A.5 Y40H7A.5 srd-23
celegans	((((((....(((.((((((.((.((((((...((.((.....)).))...)))).)).)).)))))).)))....))))))	0.600 -13.20

celegans

chromosome:IV:15181453:15181534:1

Same_strand|Intronic_coding|Y40H7A.5|Y40H7A.5 ## Y40H7A.5|protein_coding|srd-23|Serpentine Receptor, class D (delta) family member (srd-23) [Source:RefSeq_peptide;Acc:NP_502832] ## {SimpF: WRM0632aH08 1 fosmid,Y40H7A.5 1 Expression_profile}

block3995 [novel_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	18	1	3arm	25	nd	0.00	0	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------AAAUAUA---------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------CAAATATAGTGACTCTGGCCGTT------------------	23	1
celegans	agtcactgttcttggtgaacggccagagtcactatatttgggccgttcacCAAATATAGTGACTCTGGCCGTTcaccaaaaatagtgactc
	*******************************************************************************************
celegans	((((((((((.((((((((((((((((((((((((((((((........)))))))))))))))))))))))))))))).)))))))))).	1.000 -71.30

celegans

chromosome:IV:448814:448904:-1

intergenic ## {Repeats: trf 19 42 0 class=trf}

block1214 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.609	no	no	0.12/0.12	25/25/0.00	0.0	0.0	1	0	1	0	3	6	5arm	1	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	----UUAGUUA-------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---GTTAGTTATAATAATCAAATTTTTT--------------------------------------------	25	1
celegans	tatGTTAGTTATAATAATCAAATTTTTTcttccgtgactcgatagagaagaaggaatgtgtcggacccgtat
	************************************************************************
	......................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	H16D19.4 H16D19.4 H16D19.4
celegans	((((...(((...(((.((...((((((((..((.....))..))))))))..)).)))....))).)))).	0.520 -10.80

celegans

chromosome:I:12640710:12640781:1

Opposite_strand|Boundary_non-coding|H16D19.4|H16D19.4 ## H16D19.4|protein_coding|H16D19.4|H16D19.4 [Source:RefSeq_peptide;Acc:NP_493200] ## {SimpF: WRM066cD10 1 fosmid,WRM0629bB02 1 fosmid,WRM069aG07 1 fosmid,WRM0612aD06 1 fosmid}

block3185 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.093	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	3	0	3arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCAAACA----------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------GCCAAACAATGAGGTCGAACT---	21	1
celegans	ttctgttcgtttttagtgataagtttgagcgaaaatGCCAAACAATGAGGTCGAACTgaa
	************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----------	F55H2.4 F55H2.4 lrg-1
celegans	.((.(((((.(((((.......(((((.((......)))))))..))))).))))).)).	0.710 -12.90

celegans

chromosome:III:9504752:9504811:-1

Opposite_strand|Boundary_non-coding|F55H2.4|F55H2.4 ## F55H2.4|pseudogene|lrg-1|lrg-1 encodes a truncated paralog of let-99, a protein with a DEP domain (Domain found in Dishevelled, Egl-10, and Pleckstrin). lrg-1(RNAi) animals have no obvious phenotype. since the nucleotide similarity of lrg-1 to let-99 extends beyond the lrg-1 CDS, and since lrg-1 has no obvious function in RNAi assays, this gene may be decaying towards pseudogene status. [Source: WormBase] ## {SimpF: WRM0637cA05 -1 fosmid,WRM0616bE10 -1 fosmid,WRM0611cG01 -1 fosmid,WRM0618aH06 -1 fosmid}

block6059 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.202	no	no	0.55/0.55	20/20/1.00	0.0	0.0	2	0	1	0	0	2	5arm	1	nd	0.20	3	2	1	na	na

		reads	miRBase family seed
seed	-ACGAAAG---------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	TACGAAAGAGGACGCTAGCC---------------------------------------	20	2
celegans	TACGAAAGAGGACGCTAGCCagccagaaactgaaaaagagtgtcaaaaatccattttgt
	***********************************************************
celegans	.((((((((.((((((...(((.......)))......)))))).....))..))))))	0.880 -9.50

celegans

chromosome:IV:15377910:15377968:1

intergenic ## {SimpF: WRM062aG10 1 fosmid,WRM0615cD07 1 fosmid}

block5347 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.740	no	no	0.47/0.47	30/30/0.00	0.0	0.0	1	0	1	0	28	1	5arm	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------GAAUCAA------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------GGAATCAAGGGAAGACGGCAAGGAAGTTAT--------------------------------------------------------------	30	1
celegans	aaaaagtgaaaagagaacatgaattattGGAATCAAGGGAAGACGGCAAGGAAGTTATgttcgcgtttatgattcgcctcttactaaaacttgctttcagcataactgtttggcattttt
	************************************************************************************************************************
celegans	.(((((((......(((((.......((((((.((((..((((.(((...((.((((((........))))))))))))))).......)))).))))))......)))))..)))))))	0.880 -20.32

celegans

chromosome:IV:4641203:4641322:1

intergenic ## {SimpF: WRM0636bA05 1 fosmid,WRM0615bH02 1 fosmid,WRM0616dA11 1 fosmid,WRM0637aB09 1 fosmid,WRM0637cD05 1 fosmid,WRM0629aB05 1 fosmid}

block4856 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.268	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	16	2	5arm	1	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------GUUAUUG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TGTTATTGTTTCCAGCTTTG----------------------------------------------------	20	1
celegans	catattttttttacaaTGTTATTGTTTCCAGCTTTGacttaccgcatattgttgttgctcaaatggcaccattgacaaaattgtgtgt
	****************************************************************************************
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24a.1 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.3 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24h Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.8 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.10 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24a.4 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.5 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.1 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24a.3 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.6 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.2 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24e.2 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24e.1 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24g Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.9 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.4 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24a.2 Y57G11C.24 eps-8
	-----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y57G11C.24d.7 Y57G11C.24 eps-8
celegans	(((((..((((..(((((....((((...(((..((((............))))..))).....)))).)))))..))))..))))).	0.420 -12.90

celegans

chromosome:IV:14894932:14895019:-1

Opposite_strand|Intronic_coding|Y57G11C.24e.1|Y57G11C.24 ## Y57G11C.24|protein_coding|eps-8|eps-8 is predicted to encode five protein isoforms with similarity to mouse epidermal growth factor receptor kinase substrate that affects embryonic viability, growth, locomotion, osmoregulation, and larval viability. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] ## {SimpF: [cgc5194]:gei-19 -1 RNAi,WRM061bG05 -1 fosmid,WRM0617dG08 -1 fosmid,yk393c10 -1 RNAi,WRM066cF03 -1 fosmid}

block4411 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.152	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	1	12	3arm	1	nd	0.21	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CGAUGAU------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------GCGATGATCTTCTGTGATT-	19	1
celegans	agtcttcagtatgggtcaatctctgatctgcaactgaatatgatgagttcggGCGATGATCTTCTGTGATTa
	************************************************************************
celegans	((((..(((...(((((.((((((((.((.((........))...)).))))).)))))))).))).)))).	0.880 -16.10

celegans

chromosome:IV:8428649:8428720:-1

intergenic ## {SimpF: T26A8.2 -1 Expression_profile,WRM0624dG01 -1 fosmid}

block1546 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.231	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	0	7	5arm	2	nd	0.10	1	1	1	na	na

		reads	miRBase family seed
seed	-ACAGUUU----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TACAGTTTGTGTGATGCGTC----------------------------------------------	20	1
celegans	TACAGTTTGTGTGATGCGTCaacggagagctcagttccttgatatgccgtatccgcaggaatcgta
	******************************************************************
celegans	(((.((((.(((((((((((((.((((.......)))))))).....)))))).))).)))).)))	1.000 -17.40

celegans

chromosome:II:2618891:2618956:-1

intergenic ## {SimpF: WRM0620bB07 -1 fosmid}

block2747 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.208	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	13	1	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------UACACAA------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------GTACACAACGGACAGTGCC-------------	19	1
celegans	agaaacaaatcgtacatcaaagttttgtgcatcgtagctGTACACAACGGACAGTGCCaaattactttctt
	***********************************************************************
	---------------------------------------------------------------------------------	Y53F4B.5 Y53F4B.5 Y53F4B.5
celegans	(((((..(((.((((.((...(((.((((((.......)))))).))).))..))))...)))..))))).	0.900 -11.80

celegans

chromosome:II:14982856:14982926:1

Opposite_strand|Intronic_coding|Y53F4B.5|Y53F4B.5 ## Y53F4B.5|protein_coding|Y53F4B.5|Y53F4B.5 [Source:RefSeq_peptide;Acc:NP_497090] ## {SimpF: Y53F4B.H 1 Expression_profile}

block6886 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.068	no	no	0.42/0.42	26/26/0.00	0.0	0.0	1	0	1	0	8	7	3arm	1	nd	0.46	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UAUUAGU--------------------------	1	miR-230
		len	cloning frequencies
			CE1
	----------------------------------------------------GTATTAGTGTTGGTGGGAGTGGTTTT--------	26	1
celegans	acttgtcgtacagatccacaacgcacgtgctttgttccggacagagagcgcaGTATTAGTGTTGGTGGGAGTGGTTTTtcgaggag
	**************************************************************************************
celegans	.(((.(((.((...(((.((((((..(((((.(((((........))))).)))))..))))))...)))...))....))).)))	1.000 -27.50

celegans

chromosome:V:17069122:17069207:-1

intergenic ## {SimpF: WRM0612aF04 -1 fosmid,WRM0635dG10 -1 fosmid,WRM0629cH07 -1 fosmid,WRM0619bF01 -1 fosmid,WRM067aD09 -1 fosmid,WRM0641cE12 -1 fosmid,WRM0636dH06 -1 fosmid,WRM0615aG02 -1 fosmid,WRM0629bB03 -1 fosmid,WRM0614cA06 -1 fosmid,WRM0621aD01 -1 fosmid}

block6157 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.32/0.38	19/21/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	5 9	20 14	5arm 5arm	2 2	nd nd	0.37 0.33	4 3	2	1	na	na

		reads	miRBase family seed
seed	------UGAUGAC------------------------------------------------------------------------------	1	novel
seed	----------GACAAUG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----TTGATGACAATGGTTTATG-------------------------------------------------------------------	19	1
	---------TGACAATGGTTTATGAACGGT-------------------------------------------------------------	21	1
celegans	gaaaaTTGATGACAATGGTTTATGAACGGTtatttttccaaaatgttattttgggaatttatagtttaaaacgcttctctgtagaattttt
	*******************************************************************************************
celegans	(((((((....(((..(((((.(((((...((..((((((((((...))))))))))..))..))))).)).)))....)))..)))))))	0.650 -15.00

celegans

chromosome:IV:16099952:16100042:1

intergenic

block2035 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.710	no	no	0.22/0.22	18/18/0.00	0.0	0.0	2	0	1	0	17	9	5arm	1	nd	0.22	3	2	1	na	na

		reads	miRBase family seed
seed	------------------UUGAUUG------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-----------------TTTGATTGAGTTTTTTTG--------------------------------------------------------	18	2
celegans	ctgaaatagcagggaatTTTGATTGAGTTTTTTTGggaattggaaggttttgaattatgagaaggcatattaatatgtatgggttttgagg
	*******************************************************************************************
	<<<<<------------------------------------------------------------------------------------------------	ZK131.11b ZK131.11 ZK131.11
celegans	((.(((...((....((.(((((...(((((((((..((((.((.....)).)))).)))))))))..))))).))...))...))).)).	0.640 -10.20

celegans

chromosome:II:13801858:13801948:-1

Opposite_strand|Boundary_non-coding|ZK131.11a|ZK131.11 ## Opposite_strand|Intronic_coding|ZK131.11b|ZK131.11 ## ZK131.11|protein_coding|ZK131.11|ZK131.11b [Source:RefSeq_peptide;Acc:NP_872046] ## {SimpF: WRM0617cG02 -1 fosmid,WRM0638dF08 -1 fosmid,WRM068bD11 -1 fosmid}

block8223 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.356	no	no	0.57/0.57	23/23/1.00	0.0	0.0	1	0	1	0	2	-3	5arm_loop	2	nd	0.48	4	1	1	na	na

		reads	miRBase family seed
seed	---AACAGCU---------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GAACAGCTCCAGACTGAGGTTGG------------------------	23	1
celegans	agGAACAGCTCCAGACTGAGGTTGGcaaccttcttccattcgtagttct
	*************************************************
	-----------------------------------------------------------	M02F4.1 M02F4.1 M02F4.1
celegans	.(((((.((....((..(((((.....)))))..)).....)).)))))	0.960 -9.70

celegans

chromosome:X:3027598:3027646:1

Opposite_strand|Intronic_coding|M02F4.1|M02F4.1 ## M02F4.1|protein_coding|M02F4.1|M02F4.1 [Source:RefSeq_peptide;Acc:NP_508516] ## {SimpF: WRM0622dA11 1 fosmid,WRM0638aF07 1 fosmid,WRM0636dE03 1 fosmid,WRM0640dE08 1 fosmid,WRM0617aC02 1 fosmid,WRM0621bG09 1 fosmid}

block8107 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.173	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	5	18	5arm	2	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	------AUAAGUC------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----AATAAGTCCAAGAGCCCGATC-----------------------------------------------------------------------	21	1
celegans	tgagcAATAAGTCCAAGAGCCCGATCaatcgatgcttgagtatcaaatgaaagacgagcatcaacttctgtggaaactcttcctggaatagttttca
	*************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<.......................................................................................	Y73B3A.2 Y73B3A.2 Y73B3A.2
celegans	.(((.(((...((((((((.(((.......((((((((....((....))....))))))))........)))...))))...))))...)))))).	0.530 -20.76

celegans

chromosome:X:62211:62307:1

Opposite_strand|Boundary_non-coding|Y73B3A.2|Y73B3A.2 ## Y73B3A.2|protein_coding|Y73B3A.2|Y73B3A.2 [Source:RefSeq_peptide;Acc:NP_508077] ## {SimpF: WRM069bA07 -1 fosmid}

block5016 [novel_lenNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.22/0.22	18/18/0.00	0.0	0.0	1	0	1	0	4	4	3arm	1	nd	0.11	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UUAAACU--------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------TTTAAACTTTATTGAGAC----	18	1
celegans	ttctgtttcacaaagttttcataatatttaaactaatgccccaaatttggTTTAAACTTTATTGAGACagaa
	************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y105C5B.16 Y105C5B.16 lgc-19
celegans	.(((((((((..........((((..((((((((((..........))))))))))..))))))))))))).	0.940 -17.40

celegans

chromosome:IV:15957338:15957409:-1

Same_strand|Intronic_coding|Y105C5B.16|Y105C5B.16 ## Y105C5B.16|protein_coding|lgc-19|Putative uncharacterized protein lgc-19. [Source:UniProtKB/TrEMBL;Acc:Q9NAM5] ## {SimpF: WRM065bD04 -1 fosmid,WRM0615dA03 -1 fosmid,WRM0611aH08 -1 fosmid}

block4965 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.276	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	16	10	3arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------UUUGAGG----------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------TTTTGAGGTTCTTAACATTG----------------	20	1
celegans	acggaacatttttacatttttgtgaactttataaaactggagattcgttttttcttttgaTTTTGAGGTTCTTAACATTGaattttgaaggttttg
	************************************************************************************************
celegans	.((((((.((((...((((.(((((((((((.......(((((.......)))))........))))))))...)))..))))...))))))))))	0.410 -15.06

celegans

chromosome:IV:15630324:15630419:-1

intergenic ## {SimpF: WRM0615dG10 -1 fosmid}

block1996 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.076	no	no	0.42/0.42	24/24/1.00	0.0	0.0	1	0	1	0	16	4	3arm	1	nd	0.29	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUUUAUG--------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------TTTTTATGGAGCCTGACTAGTTGG----------------	24	1
celegans	aggttcaagccccgtctagaggatttaggcgtccagagaagataaattgaattttcaaTTTTTATGGAGCCTGACTAGTTGGaaaataaaatcaccta
	**************************************************************************************************
	--------------------------------------------------------------------------------------------------------<<<<	Y38E10A.21 Y38E10A.21 rgs-4
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>................................................................................	Y38E10A.t2 Y38E10A.t2 Y38E10A.t2
celegans	((((..........(((((.....((((((.((((........(((((((....)))))))...))))))))))....)))))..........)))).	0.720 -22.65

celegans

chromosome:II:12669831:12669928:-1

Opposite_strand|Intronic_coding|Y38E10A.21|Y38E10A.21 ## Y38E10A.21|protein_coding|rgs-4|rgs-4 encodes a regulator of G protein signaling. by homology, RGS-4 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling. loss of rgs-4 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-4 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability. the RGS-4 expression pattern has not yet been reported. [Source: WormBase] ## {SimpF: Y38E10A.V -1 Expression_profile}

block2326 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.576	no	no	0.16/0.16	25/25/0.00	0.0	0.0	1	0	1	0	34	-3	3arm_loop	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUUAUUA---------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------GATTATTATTTCTTGATTTTATTTG----------------------------------	25	1
celegans	cgtttatcgaattgtttgtaaaaatgaaacagatctcaatcaaaaatcaatatttcGATTATTATTTCTTGATTTTATTTGcttcttcagccagtgtgaaccattgaagcaacga
	*******************************************************************************************************************
	..................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	C29F5.3 C29F5.3 C29F5.3
celegans	((((..((((...(((..((....((((.(((((...((((((.((..((((.......))))..)).))))))..)))))....)))).....))..)))..))))...)))).	0.640 -15.70

celegans

chromosome:II:6290543:6290657:1

Opposite_strand|Boundary_non-coding|C29F5.3|C29F5.3 ## C29F5.3|protein_coding|C29F5.3|C29F5.3 [Source:RefSeq_peptide;Acc:NP_495262] ## {SimpF: WRM0635dH06 1 fosmid,WRM0613aG12 1 fosmid,WRM0638cF02 1 fosmid,C29F5.3 1 Expression_profile,WRM0626bD10 1 fosmid,WRM065aE09 1 fosmid,WRM064aE02 1 fosmid}

block6026 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.072	no	no	0.28/0.28	18/18/0.00	0.0	0.0	3	0	1	0	35	1	5arm	1	nd	0.28	4	3	1	na	na

		reads	miRBase family seed
seed	------------------------------------UUAACGU-------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-----------------------------------TTTAACGTTAATGAAGTC---------------------------------------------------------------	18	3
celegans	ttggaaataagtataaacttgattgaaatgattacTTTAACGTTAATGAAGTCtaggtgaaagaagaaattaaactatatgttatgtgaactcaacaagttcatatgtatttttaa
	********************************************************************************************************************
celegans	.((((((((.((((.((((((.((((.....((((..((((((((((....(((.......)))....))))......)))))).))))..)))))))))).)))).)))))))).	0.440 -20.00

celegans

chromosome:IV:15098385:15098500:1

intergenic

block7877 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.061	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	2	0	3arm	1	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------AUGUCAU----------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------AATGTCATCAACCACGAGGAGT--	22	1
celegans	tattgcttgtcgtttccgacattcttttgtcAATGTCATCAACCACGAGGAGTgg
	*******************************************************
celegans	((((.(((((.(((...((((((........))))))...))).))))).)))).	0.900 -13.80

celegans

chromosome:X:11692522:11692576:-1

intergenic ## {SimpF: WRM0625aC06 -1 fosmid,WRM0623bE03 -1 fosmid,WRM0633dG01 -1 fosmid,WRM0629bD12 -1 fosmid,WRM0632dE01 -1 fosmid,WRM0630bC04 -1 fosmid,WRM064bH08 -1 fosmid,WRM0628cH06 -1 fosmid}

block5521 [novel_lenNOK_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.680	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	12	9	3arm	1	4	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------UGACCAU----------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------TTGACCATATTTAATTCC------------	18	1
celegans	tataatgcttcggatatgttttaagtttcaatctaattttataattttcaaTTGACCATATTTAATTCCaggagatctgta
	*********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>	Y73B6BL.42 Y73B6BL.42 acr-25
celegans	((((...(((((((......((((((.(((((..((((....))))....)))))....)))))).))).))))...))))	0.970 -8.10

celegans

chromosome:IV:6464658:6464738:1

Same_strand|Intronic_coding|Y73B6BL.42|Y73B6BL.42 ## Y73B6BL.42|protein_coding|acr-25|Y73B6BL.42 [Source:RefSeq_peptide;Acc:NP_001023570] ## {SimpF: WRM0637bC06 1 fosmid,WRM0613aC08 1 fosmid}

block4693 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.248	no	no	0.21/0.24	19/21/0.75	0.0	0.5	4	0	1	0	10	21	5arm	1	nd	0.24	4	4	1	na	na

		reads	miRBase family seed
seed	-----------AGAUUUG---------------------------------------------------------------------------------------------------	4	novel
		len	cloning frequencies
			CE1
	----------TAGATTTGAATGATATGTTAG--------------------------------------------------------------------------------------	21	3
	----------TAGATTTGAATGATATGTT----------------------------------------------------------------------------------------	19	1
celegans	gtgaaattatTAGATTTGAATGATATGTTAGcatcaaaattgcgtccacatctgcattgatttggattcttttaaacaaatatgagcttaacattttaatattttgaaaatttgcac
	*********************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------------	C08F11.8 C08F11.8 ugt-22
celegans	((((((((.(((((.(((((....((((((((.(((...(((.(((((.(((......))).))))).........)))...)))))).))))))))))...))))).))))).)))	0.450 -19.10

celegans

chromosome:IV:13640911:13641027:-1

Opposite_strand|Intronic_coding|C08F11.8|C08F11.8 ## C08F11.8|protein_coding|ugt-22|UDP-GlucuronosylTransferase family member (ugt-22) [Source:RefSeq_peptide;Acc:NP_502633] ## {SimpF: WRM067dG06 -1 fosmid,WRM065aG08 -1 fosmid,WRM065cG01 -1 fosmid,WRM065bD09 -1 fosmid,WRM067bD01 -1 fosmid,WRM0633dA12 -1 fosmid}

block6172 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.331	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	9	2	3arm	1	nd	0.38	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------AUUGAGU----------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------GATTGAGTTGAGGAGTCTTTG---------	21	1
celegans	gcaacaattttgaaaatctccaaagctttttgatacaccttGATTGAGTTGAGGAGTCTTTGaatcaggcg
	***********************************************************************
celegans	((......((..((...((((..(((((.((((......))))..)))))..))))..))..))....)).	0.890 -12.90

celegans

chromosome:IV:16190914:16190984:1

intergenic ## {SimpF: WRM0637dB08 1 fosmid,WRM0626dE07 1 fosmid,WRM0621bE04 1 fosmid}

block1376 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	20	-3	5arm_loop	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------CACAAGU------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------TCACAAGTCAAGACAGAGCTTC----------------------------------------------	22	1
celegans	cttgtcctagtccagaagcaTCACAAGTCAAGACAGAGCTTCaccgttctgtcttgtaatgtgacgcgctactcttatatcggaggag
	****************************************************************************************
celegans	(((.(((......(((.((.(((((...(((((((((((......)))))))))))...))))).)).....)))......))).)))	0.930 -31.50

celegans

chromosome:I:15064529:15064616:1

intergenic ## {SimpF: WRM066aE11 1 fosmid,WRM068cA11 1 fosmid,WRM067aB07 1 fosmid,WRM0628aC12 1 fosmid,WRM0625cG10 1 fosmid,WRM0619bG03 1 fosmid,WRM0629dE08 1 fosmid,WRM0637dE09 1 fosmid,WRM0623dH11 1 fosmid,WRM0631aD12 1 fosmid,WRM0640bG08 1 fosmid,WRM0626cH01 1 fosmid,WRM0615cH09 1 fosmid}

block2858 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.481	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	8	14	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AACUUUA--------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------CAACTTTATGTCGCAATGTC--------	20	1
celegans	tcagctaaactaatgacatattgagatgctcggcaatgtatggaggacgaacacaaccggaCAACTTTATGTCGCAATGTCaccgtgaa
	*****************************************************************************************
celegans	(((.....((...(((((((..(((.((..(((...(((.((.....)).)))...)))..)).))))))))))....)).....))).	0.780 -16.80

celegans

chromosome:III:3831087:3831175:-1

intergenic ## {SimpF: WRM0634bH05 -1 fosmid,WRM0626aB12 -1 fosmid,WRM0640dH02 -1 fosmid,WRM065cE05 -1 fosmid,WRM062aH09 -1 fosmid,WRM0613aC06 -1 fosmid,C36A4.10 -1 Expression_profile,WRM063dB07 -1 fosmid,WRM0624bD07 -1 fosmid}

block3508 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.032	no	no	0.24/0.24	25/25/0.00	0.0	0.0	2	0	1	0	8	7	5arm	1	nd	0.28	4	2	1	na	na

		reads	miRBase family seed
seed	---------AUCAAGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------GATCAAGATTTTATTTAGAAAAACG-------------------------------------------------------------	25	2
celegans	cgggcattGATCAAGATTTTATTTAGAAAAACGacaaatgacaggtttatttccattagttgctcttctaaattcttgaattatccacgctcgc
	**********************************************************************************************
celegans	(((((..(((((((((....((((((((...((((.((((.............)))).))))...)))))))))))))).))).....))))).	1.000 -20.52

celegans

chromosome:III:4059607:4059700:1

intergenic ## {SimpF: WRM0625cH11 1 fosmid,WRM0627aC06 1 fosmid,WRM0641dG03 1 fosmid,WRM0633aE06 1 fosmid,E03A3.4 1 Expression_profile}

block2817 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.012	no	no	0.32/0.32	22/22/1.00	0.0	0.0	1	0	1	0	10	20	5arm	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	-----------UGAAAAU---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------GTGAAAATGAGTGAAAATATCG-------------------------------------------------------------------------------	22	1
celegans	aatttttaagGTGAAAATGAGTGAAAATATCGatttttcaggcaaatttcagggaaaaattgaacattttgagtgaaaaaaagggctttttgcggaattttaagtgaaaat
	***************************************************************************************************************
celegans	.(((((((...(((((....(((((((..((..(((((((..((((.(((((.......)))))...))))..)))))))..))..)))))))....)))))..)))))))	0.990 -20.70

celegans

chromosome:III:2347134:2347244:-1

intergenic ## {SimpF: CEOP3075 -1 Operon}

block7636 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.158	no	no	0.31/0.31	26/26/0.00	0.0	0.0	1	0	1	0	12	6	3arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UUCACAA------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------GTTCACAAGGATTTTATATGTTCTGT------------	26	1
celegans	ctcgctttgatactcaaacagaaaaaatcaaaaattttttgatctttattcattatacaatttaGTTCACAAGGATTTTATATGTTCTGTttatgaagacga
	******************************************************************************************************
celegans	.(((((((.(((....(((((((...((..((((((((((((.((..(((........)))..)).))).)))))))))..)).)))))))))))))).)))	0.840 -15.20

celegans

chromosome:X:1643998:1644099:-1

intergenic ## {SimpF: WRM0619cB06 -1 fosmid,WRM0637cC01 -1 fosmid,WRM0635bH10 -1 fosmid,WRM0634dF02 -1 fosmid,WRM061aG07 -1 fosmid,WRM0626bE10 -1 fosmid,WRM0626cF12 -1 fosmid,WRM0624cB10 -1 fosmid,WRM0641aB04 -1 fosmid,WRM0614bA02 -1 fosmid}

block7028 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.157	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	19	11	5arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------AUAGAAA-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------GATAGAAAGGTGAAAATTTT-------------------------------------------------------------------	20	1
celegans	gtaatcgtgatcagacggtGATAGAAAGGTGAAAATTTTcagaaaaatggttctgctaattgagtttttttcacctgttcttcttatgattttgccattccgatta
	**********************************************************************************************************
celegans	.((((((..((((((..((((.(((((((((((((..(((((.....(((.....))).)))))...))))))))).))))..))))...))))..))..))))))	0.830 -22.30

celegans

chromosome:V:215812:215917:1

intergenic

block230 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.409	no	no	0.32/0.32	22/22/1.00	0.0	0.0	1	0	1	0	4	7	3arm	1	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------AAUUUUU------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------CAATTTTTGACGTTGTTGTTTG----	22	1
celegans	gatgttattattttaagtcttctagaattcattctccgttaccgagaaaaCAATTTTTGACGTTGTTGTTTGcatt
	****************************************************************************
celegans	(((((....((..((((((....((((((..(((((.......)))))...)))))).))).)))..))..)))))	0.950 -10.20

celegans

chromosome:I:5488180:5488255:-1

intergenic ## {SimpF: WRM0636cF03 -1 fosmid,WRM0633aG08 -1 fosmid,WRM0613bH03 -1 fosmid,WRM0633dH04 -1 fosmid,WRM066cC07 -1 fosmid}

block5902 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.040	no	no	0.46/0.50	18/24/0.75	0.2	1.5	4	0	1	0	16	12	5arm	1	nd	0.22	3	4	1	na	na

		reads	miRBase family seed
seed	-----------------UCGUUUG------------------------------------------------------------------------------------------	3	novel
seed	------------------CGUUUGU-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TTCGTTTGTGGCACTAGGATCTTG--------------------------------------------------------------------------	24	2
	-----------------TCGTTTGTGGCACTAGGATCTTG--------------------------------------------------------------------------	23	1
	----------------TTCGTTTGTGGCACTAGG--------------------------------------------------------------------------------	18	1
celegans	catgaaagtaacaaaaTTCGTTTGTGGCACTAGGATCTTGaatttaagagcatcattgtaacttgaaatttaaacatttcgaacctagttcttgacgtggaattaaactttcat
	******************************************************************************************************************
celegans	.((((((((.........((((...((.((((((.(((((((((((((.(((....)))..)))))).))))).......)).)))))).)).)))).........))))))))	0.540 -24.28

celegans

chromosome:IV:14202331:14202444:1

intergenic ## {SimpF: WRM0626cF11 1 fosmid,WRM0637bG07 1 fosmid,WRM0618cE02 1 fosmid,WRM0633cH03 1 fosmid,WRM065dE07 1 fosmid,WRM0636cD04 1 fosmid,WRM063bF11 1 fosmid}

block5202 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.370	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	9	2	5arm	1	nd	0.11	2	1	1	na	na

		reads	miRBase family seed
seed	----------CGAAAAA------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------TCGAAAAAATTGGAATTG--------------------------------------------------	18	1
celegans	gcttttttcTCGAAAAAATTGGAATTGaatagagctttcaattctctcccaaagtgcatttcgacatctttcctggc
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y38C1AA.3b Y38C1AA.3 pnc-1
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y38C1AA.3a Y38C1AA.3 pnc-1
celegans	.........((((((..((((((((((((.......))))))))).......)))...)))))).............	0.560 -10.91

celegans

chromosome:IV:187372:187448:1

block6612 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.151	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	4	3	5arm	4	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----GGAAGUG-------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GGGAAGTGGCAGAGTGACC--------------------------------	19	1
celegans	atggGGGAAGTGGCAGAGTGACCaagaaaaactatgcactttgtacattcggcat
	*******************************************************
celegans	......(((...((((((((....((.....))...))))))))...))).....	1.000 -12.00

celegans

chromosome:V:8895580:8895634:-1

intergenic ## {SimpF: WRM0627bB06 -1 fosmid,WRM0638aA04 -1 fosmid,WRM0625aH11 -1 fosmid,WRM0614bC01 -1 fosmid,WRM0620dF01 -1 fosmid,WRM0628bC09 -1 fosmid,WRM0630cG07 -1 fosmid,WRM0627cF05 -1 fosmid,WRM0626cG01 -1 fosmid,WRM064dE05 -1 fosmid,WRM063bH07 -1 fosmid,WRM0637cF09 -1 fosmid,WRM0614aB05 -1 fosmid}

block3123 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.390	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	3	5	3arm	1	nd	0.24	3	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------AGAAUUU----------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------GAGAATTTGAGATGCTAATGG---	21	2
celegans	cttgtagtactcgtaaggtgggatttgttccatatacgacattgatggaGAGAATTTGAGATGCTAATGGagg
	*************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................................	C02F5.5 C02F5.5 C02F5.5
celegans	(((.(((((((((........(((((.((((((...........)))))).))))))))).)))))...))).	0.720 -13.60

celegans

chromosome:III:8236101:8236173:-1

intergenic ## {SimpF: WRM0610bE09 -1 fosmid,C02F5.5 -1 Expression_profile,WRM0628dD12 -1 fosmid,WRM064cD03 -1 fosmid,WRM0619cF04 -1 fosmid,WRM0620aC12 -1 fosmid,WRM0633aA03 -1 fosmid,WRM0633aE10 -1 fosmid}

block2684 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.129	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	11	15	3arm	2	nd	0.21	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------CAGACUG----------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------ACAGACTGAGGATAAACGA-----------	19	1
celegans	tttgctgtcattgtttcgaaattctaaatctgtatcataatggtagtttcgttaaacttgcccgttcgACAGACTGAGGATAAACGAagacgtcgaga
	**************************************************************************************************
celegans	((((.((((.((((((....(((((...(((((.....(((((.(((((....)))))...)))))..)))))...))))))))))).)))).)))).	1.000 -22.80

celegans

chromosome:II:13038817:13038914:1

intergenic ## {SimpF: WRM065aF11 1 fosmid}

block7626 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.542	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	19	-1	5arm_loop	3	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------AAUGGUG--------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------GAATGGTGACTTGAATGGC---------------------------------------	19	1
celegans	accagacacggtggcacttGAATGGTGACTTGAATGGCaaggagaccagaagcatttattctgtcctgtaaacggta
	*****************************************************************************
	............................................................<<<<<<<<<<-----------------	ZK402.3 ZK402.3 ZK402.3
celegans	(((....((((.((((...((((((((.(((...(((........))).))))))).))))))))))))....))).	0.780 -16.40

celegans

chromosome:X:1402835:1402911:-1

intergenic ## {SimpF: WRM0625bG09 -1 fosmid,WRM0633aC09 -1 fosmid,WRM0617aH09 -1 fosmid,WRM064cE08 -1 fosmid,WRM0626cF12 -1 fosmid,WRM0629aD05 -1 fosmid,WRM0635cC09 -1 fosmid,WRM0636bA02 -1 fosmid,WRM063cH01 -1 fosmid,WRM0639aA01 -1 fosmid}

block5157 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.172	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	7	27	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------CGUUGCG------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------------------TCGTTGCGCCCAGGGTATC-------	19	1
celegans	gaaggatacgcgagggatggtctgaaattgtaggttaaaataaaagtcggtttcacaatttcggtaaaactgaaatatgtttttttctaaTCGTTGCGCCCAGGGTATCagcttcg
	********************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------------------------------------------------------------------------------	Y116A8C.3 Y116A8C.3 Y116A8C.3
celegans	(((((((((....(((.((...(((.....((((..((((((....(((((((.((.......)).)))))))....))))))..)))).)))...)))))...)))))..)))).	0.650 -24.60

celegans

chromosome:IV:16916839:16916954:-1

Opposite_strand|Intronic_coding|Y116A8C.3|Y116A8C.3 ## Y116A8C.3|protein_coding|Y116A8C.3|Y116A8C.3 [Source:RefSeq_peptide;Acc:NP_503003] ## {SimpF: WRM0621dF01 -1 fosmid}

block5118 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.518	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	16	4	5arm	1	nd	0.10	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------UCAAGAG----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TTCAAGAGTACGATCAGTTTT---------------------------------------------------------------------------	21	1
celegans	atagtaaaagtaacagTTCAAGAGTACGATCAGTTTTtttcaatttcatgttttagaaaaaataccaacgactgtttcactttgttttcttttctgaactcttttttttctg
	****************************************************************************************************************
celegans	.(((.(((((.((.((((((((((.((((.(((((((((((..............))))))........))))).......)))).))))....)))))).)).))))))))	0.670 -13.74

celegans

chromosome:IV:16600096:16600207:-1

intergenic ## {SimpF: WRM0614bA03 -1 fosmid,WRM069cB05 -1 fosmid,WRM0621bE04 -1 fosmid}

block3368 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.956	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	9	26	5arm	1	6	0.25	4	1	1	na	na

		reads	miRBase family seed
seed	----------AACAAUG-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------TAACAATGTGATTAAGCCCG-------------------------------------------------------------------------------------	20	1
celegans	ggatgcgaaTAACAATGTGATTAAGCCCGatcaaccaccgccacagtaaattgaactttttcattgcgataaatatttcttttcggttccttgtatagtttctgttattagttc
	******************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	T03F6.6.2 T03F6.6 T03F6.6
	>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	T03F6.6.1 T03F6.6 T03F6.6
celegans	((((...(((((((....(((((.((((((...............((((..((((....))))))))...............))))......)).)))))..))))))).))))	0.560 -14.21

celegans

chromosome:III:13378293:13378406:-1

block6605 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.326	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	2	28	5arm	2	nd	0.56	5	1	1	na	na

		reads	miRBase family seed
seed	---UUUUACG---------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTTTTACGCTGGCCACAA-----------------------------------------------------------------------------------------	18	1
celegans	aaGTTTTACGCTGGCCACAAaggaaacaaaatgtgtacgatcagaaggaccaaaagccttaaaatgtttacaagcgagttttccgcaggtaaaaaagctatattaactt
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	K06C4.1 K06C4.1 K06C4.1
celegans	(((((....(((.(((.....(((((.......((((....((.((((........))))....))..)))).......)))))...))).....)))......)))))	0.710 -16.54

celegans

chromosome:V:8887854:8887962:-1

Same_strand|Intronic_coding|K06C4.1|K06C4.1 ## K06C4.1|protein_coding|K06C4.1|K06C4.1 [Source:RefSeq_peptide;Acc:NP_505290] ## {SimpF: WRM0627bB06 -1 fosmid,WRM0611cD09 -1 fosmid,WRM0638aA04 -1 fosmid,WRM0625aH11 -1 fosmid,WRM0632cD08 -1 fosmid,WRM0614bC01 -1 fosmid,WRM0620dF01 -1 fosmid,WRM0632aF08 -1 fosmid,WRM0628bC09 -1 fosmid,WRM0636aD03 -1 fosmid,WRM0630cG07 -1 fosmid,WRM0627cF05 -1 fosmid,WRM0626cG01 -1 fosmid,WRM064dE05 -1 fosmid,WRM063bH07 -1 fosmid,WRM068aG12 -1 fosmid,WRM0614aB05 -1 fosmid}

block4267 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.084	no	no	0.33/0.33	18/18/0.00	0.0	0.0	6	0	1	0	12	9	3arm	1	nd	0.00	0	6	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------AAUGUGA----------------------	6	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------TAATGTGATTTTGGGTTG------------	18	6
celegans	aaaaataattaactgtttcaaagttacattagatataatttgtgttcgagcattgcgaTAATGTGATTTTGGGTTGaaaaatgttttt
	****************************************************************************************
celegans	(((((((.((((((....(((((((((((((..........((((....)))).....)))))))))))))))))))....)))))))	0.860 -15.96

celegans

chromosome:IV:5580568:5580655:-1

intergenic ## {SimpF: WRM0630cD06 -1 fosmid,WRM063bD03 -1 fosmid,WRM0615dA02 -1 fosmid}

block5374 [novel_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.33/0.33	21/21/1.00	0.5	0.5	2	0	1	0	13	8	5arm	1	nd	0.38	5	2	1	na	na

		reads	miRBase family seed
seed	--------------UUGUUUA---------------------------------------------------------------------------------	1	novel
seed	---------------UGUUUAU--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------TTGTTTATTGCTCTGGTTGTT-------------------------------------------------------------------	21	1
	-------------TTTGTTTATTGCTCTGGTTGT--------------------------------------------------------------------	21	1
celegans	gcggagtttagaaTTTGTTTATTGCTCTGGTTGTTtggttaaaaatgaaaaaaaaactatttaatcgtcagttctagagctatggggtaatttaactcggca
	******************************************************************************************************
	----------------------------------------------------------------------------------------------------------------	Y9C9A.13 Y9C9A.13 Y9C9A.13
celegans	((.(((((..(((((..(((((.(((((((.....((((((((................))))))))......))))))).)))))..)))))))))).)).	1.000 -26.59

celegans

chromosome:IV:4966637:4966738:1

Opposite_strand|Intronic_coding|Y9C9A.13|Y9C9A.13 ## Y9C9A.13|protein_coding|Y9C9A.13|Y9C9A.13 [Source:RefSeq_peptide;Acc:NP_500685] ## {SimpF: WRM065bG06 1 fosmid,WRM0633cB09 1 fosmid,WRM0630aF12 1 fosmid,Y9C9A_54.B 1 Expression_profile}

block5009 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.633	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	11	1	3arm	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UUGUUAU-----------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------TTTGTTATTGTCGGCAGGAG-----------	20	1
celegans	aaaattcactgtttcagcgcccccgaaagtaaaacaagcattaatttatagcagTTTGTTATTGTCGGCAGGAGattcttgtttt
	*************************************************************************************
celegans	(((((.....(((((...(((..(((......(((((((..............))))))).)))..)))..)))))....)))))	0.810 -12.04

celegans

chromosome:IV:15933948:15934032:-1

intergenic ## {SimpF: WRM0611aH08 -1 fosmid,WRM0633cH08 -1 fosmid}

block2156 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.259	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	10	4	5arm	2	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-----------UUGACCG----------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------GTTGACCGCCCAGTATAGCG----------------------------------------	20	1
celegans	gatgcaccatGTTGACCGCCCAGTATAGCGggttggggagccgcactggggtcaagccggaagaagtgtc
	**********************************************************************
celegans	(((((.((...(((((..((((((...((((.((...)).)))))))))))))))...)).....)))))	0.990 -21.90

celegans

chromosome:II:2164258:2164327:1

intergenic ## {SimpF: oe = 1.17 0 CpG,WRM0622bG08 1 fosmid}

block4828 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.967	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	1	23	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--AUUUUCU---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-TATTTTCTTTATCATCCGCGC--------------------------------------------------------------------------------------------	21	1
celegans	tTATTTTCTTTATCATCCGCGCtcatcaaaattcaaaatacaagatagttttacagtattcattttttttaatttgaagattccacagttatcggagaaatttacagttaatga
	******************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------	Y57G11C.49 Y57G11C.49 lgc-8
celegans	(((((..((.((...((((.(((........((((((.((.((((...................)))).)).))))))........)))...))))......)).))..)))))	0.800 -9.50

celegans

chromosome:IV:14719088:14719201:-1

Opposite_strand|Intronic_coding|Y57G11C.49|Y57G11C.49 ## Y57G11C.49|protein_coding|lgc-8|Y57G11C.49 [Source:RefSeq_peptide;Acc:NP_001023533] ## {SimpF: WRM0620bA12 -1 fosmid}

block3788 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	31	8	5arm	1	nd	0.06	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------GAAGAGA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------AGAAGAGAGATCAGCAAC--------------------------------------------------------------------	18	1
celegans	gccgaataaagaaggcgcgctcgaagagccgAGAAGAGAGATCAGCAACaacaacagctgctgatgtttttgctgatctctcttctcggctcttcgagcgcgtcttcttgcattggc
	*********************************************************************************************************************
celegans	(((((...((((((((((((((((((((((((((((((((((((((((.((((.(((...))).)))).))))))))))))))))))))))))))))))))))))))))...)))))	1.000 -93.30

celegans

chromosome:III:9408476:9408592:1

intergenic ## {Repeats: trf 1 2 0 class=trf} ## {SimpF: WRM066dG12 1 fosmid,WRM063bH04 1 fosmid,WRM0625cD09 1 fosmid}

block960 [novel_lenNOK_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.461	no	no	0.29/0.29	28/28/0.00	0.0	0.0	2	0	1	0	13	10	3arm	1	0	0.32	4	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------AUAAACA---------------------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------AATAAACATTGAGTTATTCATTTCGCAG-------------	28	2
celegans	ccagagatcgttgagaagcaggcagacaatgatgttcagtttgttgatggtaagtgttttacttggcAATAAACATTGAGTTATTCATTTCGCAGatcaacaagtggg
	************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>	H27M09.3 H27M09.3 H27M09.3
celegans	(((......(((((.......((.((.(((((..((((((((((((..((((((...))))))...))))))))..))))....)))))))))...)))))...))).	0.510 -21.90

celegans

chromosome:I:6849223:6849330:1

Same_strand|Intronic_coding|H27M09.3|H27M09.3 ## H27M09.3|protein_coding|H27M09.3|H27M09.3 [Source:RefSeq_peptide;Acc:NP_491960] ## {SimpF: WRM0616cA04 1 fosmid,CEOP1902 1 Operon,WRM062cA05 1 fosmid,WRM0640aH10 1 fosmid}

block4161 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.082	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	18	15	3arm	2	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------AUGAUGA---------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------TATGATGAGTTCGGGCGATGATC------------------	23	1
celegans	tgcggggtttacactggtcatctactgcggtggaaaactttagtcttcagtatgggtcaatctctgatctgcaactgaaTATGATGAGTTCGGGCGATGATCttttgtgattaaatcgca
	************************************************************************************************************************
celegans	.((((...(((((..(((((((..(((........(((((..((.((((((..((((((.....))))))...)))))).))...))))))))..)))))))...))))).....)))).	0.710 -33.90

celegans

chromosome:IV:4880772:4880891:-1

intergenic ## {SimpF: WRM0617aF03 -1 fosmid,WRM0641bG05 -1 fosmid,WRM0631dA02 -1 fosmid,WRM061cE11 -1 fosmid,WRM0629bB01 -1 fosmid}

block8081 [novel_lenNOK_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.28/0.28	18/18/0.00	0.0	0.0	2	0	1	0	23	-3	3arm_loop	1	nd	0.17	2	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------UGUAGAA---------------------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------TTGTAGAAGTTTGATACT-----------------------	18	2
celegans	gtttcagacagttgtcttagcggtgttatatttaaacttctgtTTGTAGAAGTTTGATACTaaatgagaaaatgattgagaaac
	************************************************************************************
celegans	.((((((.((....(((((..(((((((......((((((((....)))))))))))))))...)))))...)).))))))...	1.000 -20.80

celegans

chromosome:X:16883402:16883485:-1

intergenic ## {SimpF: WRM068aE01 -1 fosmid,WRM0624dB02 -1 fosmid,WRM0631cA08 -1 fosmid,WRM064dG08 -1 fosmid,WRM0636aG05 -1 fosmid,WRM069dH03 -1 fosmid,WRM068bE05 -1 fosmid,WRM063bD10 -1 fosmid,WRM0639dE10 -1 fosmid,WRM0639bE01 -1 fosmid}

block7401 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	32	0	5arm	3	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------UUGUUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------GTTGTTGGGAGAGTTATTGGGATC-----------------------------------------------------------	24	1
celegans	gacggcagtgtagatggcattcatcttgaggtGTTGTTGGGAGAGTTATTGGGATCgatttgatcgtgatttgaatgacaatttcctccttatttataccaactatttgtcatca
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	W06A7.4 W06A7.4 W06A7.4
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..............................................................................	W06A7.5 W06A7.5 nspa-8
celegans	((.(((((.((((.(((.((.......((((.(((((((...(((((((...((((.....)))))))))))...)))))))..)))).......)).))).))))))))).)).	0.430 -29.54

celegans

chromosome:V:14827007:14827121:1

Opposite_strand|Boundary_non-coding|W06A7.5|W06A7.5 ## Same_strand|Intronic_coding|W06A7.4|W06A7.4 ## W06A7.5|protein_coding|nspa-8|Nematode Specific Peptide family/group A family member (nspa-8) [Source:RefSeq_peptide;Acc:NP_506654] ## W06A7.4|protein_coding|W06A7.4|W06A7.4 [Source:RefSeq_peptide;Acc:NP_506655] ## {SimpF: WRM0623cA05 1 fosmid,W06A7.5 1 Expression_profile,WRM0620cD10 1 fosmid,WRM0617cC12 1 fosmid}

block4448 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.094	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	1	7	3arm	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------GCGAAAA------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------TGCGAAAATATAGTGTGGC-	19	1
celegans	gtttcattatattcatttaagaggaacgtggaaatagtcgttcaaTGCGAAAATATAGTGTGGCa
	*****************************************************************
celegans	((..(((((((((..(((.....(((((..........))))).....))))))))))))..)).	0.910 -13.10

celegans

chromosome:IV:9160443:9160507:-1

intergenic ## {SimpF: WRM0611cD03 -1 fosmid,WRM0612cA03 -1 fosmid,WRM0618bC10 -1 fosmid,WRM063dB02 -1 fosmid,WRM0610bB03 -1 fosmid,WRM0639dG07 -1 fosmid}

block3662 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.080	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	15	-2	3arm_loop	1	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------AUGAGUG----------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------GATGAGTGAACCAAAATAGGT---------------	21	1
celegans	atgtagatgatctctccgcttgggtaactgaacagtGATGAGTGAACCAAAATAGGTagatcaaaatttata
	************************************************************************
celegans	.((((((((((((..((..((((...(((...((....)))))...))))....)).))))))...))))))	0.900 -15.40

celegans

chromosome:III:6558675:6558746:1

intergenic ## {Repeats: dust 41434 41442 0 class=dust} ## {SimpF: WRM0614cB09 1 fosmid,F27B3.1 1 Expression_profile}

block1246 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.537	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	21	15	3arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUUGAGU------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------GATTGAGTGGATTGTAGTTCAGT---------------------	23	1
celegans	tcctatcatcgataagtgtgcaatggattgtcaaagaagccagattggggaactctcggaggggaatgattcgatcGATTGAGTGGATTGTAGTTCAGTgtcaatgtcgtcaacgatggg
	************************************************************************************************************************
celegans	.((((((..(((((..((.(((.(((((((.(((....(((((((((((....((((....))))....)))))))...)).))...)))))))))).))))).))))).....))))))	0.520 -28.40

celegans

chromosome:I:13661855:13661974:1

intergenic ## {SimpF: WRM0613cC11 1 fosmid,WRM0617dF08 1 fosmid,W09C5.9 1 Expression_profile}

block463 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.514	no	no	0.29/0.29	24/24/1.00	0.0	0.0	1	0	1	0	9	0	5arm	1	nd	0.54	4	1	1	na	na

		reads	miRBase family seed
seed	----------AUAAGAA------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------GATAAGAAAGTGAAAAGTATCTTG--------------------------------	24	1
celegans	tcgacatttGATAAGAAAGTGAAAAGTATCTTGaatcgagcttcttgacaatcgcaatagtcggt
	*****************************************************************
	<<<<<<<<<<<<...............................................................	Y106G6G.3 Y106G6G.3 dlc-6
celegans	(((((..(((....((...((..(((...((((...))))...)))..)).)).)))..))))).	0.770 -9.80

celegans

chromosome:I:10323548:10323612:-1

intergenic ## {SimpF: WRM0629aD01 -1 fosmid,WRM068dE08 -1 fosmid,WRM0618aA05 -1 fosmid,Y106G6G.3 -1 Expression_profile,WRM065cH08 -1 fosmid}

block6450 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.329	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	18	3	5arm	25	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------AAAUAUA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------CAAATATAGTGACTCTGGCCGTT-------------------------------------------------------	23	1
celegans	gtgactctgaccgttcacCAAATATAGTGACTCTGGCCGTTcaccaaaaatagtgactctggccgttcaccaagtatagtgactctggccgttcac
	************************************************************************************************
celegans	((((...((.(((.((((...((((.((((...((((((.((((........))))...)))))).))))...)))).))))...))).)).))))	0.760 -21.30

celegans

chromosome:V:5284935:5285030:-1

intergenic ## {Repeats: trf 65 87 0 class=trf,trf 1638 1661 0 class=trf,trf 117 140 0 class=trf,trf 23 46 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid,WRM066dC01 -1 fosmid}

block5842 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.842	no	no	0.33/0.35	18/20/0.50	0.0	1.0	2	0	1	0	10	5	3arm	2	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------AUUGGAU----------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------TATTGGATTTAGATCTGGAG----------	20	1
	--------------------------------------------------TATTGGATTTAGATCTGG------------	18	1
celegans	acgactgtttcattgaaatcttaaaagcatcgtgtttttacttatggcatTATTGGATTTAGATCTGGAGagaacattgt
	********************************************************************************
celegans	((((.(((((..((...(((.((((..((..(((((.........)))))...))..)))))))...))..)))))))))	0.410 -8.10

celegans

chromosome:IV:13662831:13662910:1

intergenic ## {SimpF: WRM0640aB11 1 fosmid,WRM065cG01 1 fosmid,WRM0636aH06 1 fosmid,WRM0634dB07 1 fosmid,WRM0633dA12 1 fosmid}

block5430 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.254	no	no	0.36/0.36	22/22/1.00	0.0	0.0	2	0	1	0	3	7	5arm	1	nd	0.32	3	2	1	na	na

		reads	miRBase family seed
seed	----GGAUAAC------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	---AGGATAACAGCTTAGATTCAGT----------------------------------------------	22	2
celegans	tcaAGGATAACAGCTTAGATTCAGTctctcaagaaattgattgtctaactgagcaagcatgattcatttgg
	***********************************************************************
	...............................................................>>>>>>>>>>>>>>>>>>	F36H12.5 F36H12.5 F36H12.5
celegans	.((((((...((((((...((((((...((((....)))).......)))))).)))).))..)).)))).	0.910 -12.50

celegans

chromosome:IV:5266797:5266867:1

intergenic ## {SimpF: F36H12.5 1 Expression_profile,WRM0613dD04 1 fosmid}

block5327 [novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.594	no	no	0.44/0.46	24/26/0.33	0.0 0.0	1.0 0.0	2 1	0 0	1 1	0 0	17 29	0 -11	5arm 5arm_loop_3arm	1 1	nd nd	0.38 0.44	4 7	3	1	na	na

		reads	miRBase family seed
seed	------------------AUAAUGA---------------------------------------------------------------------	2	novel
seed	------------------------------ACCAAUC---------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------GACCAATCCAAGAGATGCCAGTTTT----------------------------------------	25	1
	-----------------GATAATGAACCCGACCAATCCAAGAG---------------------------------------------------	26	1
	-----------------GATAATGAACCCGACCAATCCAAG-----------------------------------------------------	24	1
celegans	atcacgacgagctcgacGATAATGAACCCGACCAATCCAAGAGATGCCAGTTTTtggaaaaattcttcctcgatgttgaatgcttgaactgatg
	**********************************************************************************************
celegans	((((...(((((....(((((.(((....((....((((((((.......)))))))).....))....))).)))))...)))))...)))).	0.520 -17.20

celegans

chromosome:IV:3907455:3907548:1

intergenic ## {SimpF: WRM068aF02 1 fosmid,WRM0634bC03 1 fosmid,WRM0633cH10 1 fosmid}

block6397 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.094	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	3	22	5arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	----UGAAAUG------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---TTGAAATGAATAAAATAC--------------------------------------------------------------------	18	1
celegans	tttTTGAAATGAATAAAATACtaggtaactgttctttttcgattattaatcgactagaaagacaattgtttgtttcattcgtcaaaagt
	*****************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	R05D8.12 R05D8.12 srx-27
celegans	(((((((((((((..(((((....((.....((((...(((((.....)))))..))))..))...)))))..))))))..))))))).	0.620 -15.70

celegans

chromosome:V:2753468:2753556:-1

Same_strand|Intronic_non-coding|R05D8.12|R05D8.12 ## R05D8.12|pseudogene|srx-27| ## {SimpF: WRM0613dC03 -1 fosmid,WRM0629cH06 -1 fosmid,WRM0640bA07 -1 fosmid,WRM0629cA09 -1 fosmid,WRM0613bF03 -1 fosmid,WRM0637aA05 -1 fosmid,WRM0629bC09 -1 fosmid}

block5499 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.709	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	4	7	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------AUAGUUC------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------GATAGTTCAGCTGTGAGTGTGC----	22	1
celegans	attgtcgctagctcgtctttttgtctttatacctgatagtggtctcgGATAGTTCAGCTGTGAGTGTGCcaat
	*************************************************************************
celegans	((((.(((..(((((.((..((((((....(((.......)))...))))))...))...)))))))).))))	0.940 -12.90

celegans

chromosome:IV:6011493:6011565:1

intergenic ## {SimpF: WRM0614cH07 1 fosmid,WRM0628aC03 1 fosmid,WRM0610bD01 1 fosmid,WRM0626aE06 1 fosmid,WRM0615cA11 1 fosmid,WRM0615bA12 1 fosmid,WRM0639aA06 1 fosmid,WRM0639dC06 1 fosmid,WRM0637aD02 1 fosmid}

block4797 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.475	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	28	2	5arm	1	nd	0.21	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UGCUUUG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------TTGCTTTGAAAGGGCCATG-----------------------------------------------------	19	1
celegans	aatcttctggcaactttgatgttttcgtTTGCTTTGAAAGGGCCATGaaattttttttgaaccgtttcgagaagtcaacaaatattactttaaagagatt
	****************************************************************************************************
celegans	((((.(((........((((((((..(((.(((((((((((..((.(((....))).))..)).))))))..))).)))))))))))......)))))))	0.910 -15.64

celegans

chromosome:IV:14509883:14509982:-1

intergenic ## {SimpF: WRM0613aE08 -1 fosmid}

sblock36 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.384	no	no	0.48/0.57	21/23/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	13 15	-3 -4	5arm_loop 3arm_loop	1 1	nd nd	0.48 0.33	6 3	2	1	0	0

		reads	miRBase family seed
seed	--------------UCUAUCG-------------------------------------------------	1	novel
seed	-----------------------------------UUCGUUU----------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------GTCTATCGGGGACCTCTAGCCAT----------------------------------	23	1
	----------------------------------ATTCGTTTGAGATGGTCTGGC---------------	21	1
celegans	gatcatgatttttGTCTATCGGGGACCTCTAGCCATTCGTTTGAGATGGTCTGGCaaatgagcatagatt
	**********************************************************************
celegans	(((((((...((((((......((((((((.((.....))...))).)))))))))))....))).))))	0.800 -14.80

celegans

chromosome:IV:6356984:6357053:-1

intergenic

block5298 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.243	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	0	3	3arm	1	nd	0.05	1	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AUGGCAG------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------GATGGCAGCTTGAAGAAATC	20	2
celegans	cgattatctgatcaatgttgtcctgctcgattccggttGATGGCAGCTTGAAGAAATC
	**********************************************************
celegans	.((((.(((..((((.((((.((...(((((....))))).)))))))))))))))))	0.990 -13.10

celegans

chromosome:IV:3052119:3052176:1

intergenic ## {SimpF: WRM0636bG07 1 fosmid}

block287 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.33/0.33	24/24/1.00	0.0	0.0	1	0	1	0	0	-3	5arm_loop	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-UUAUCAU------------------------------------	1	novel
		len	cloning frequencies
			CE1
	GTTATCATCAGCCATTATATCGAA--------------------	24	1
celegans	GTTATCATCAGCCATTATATCGAAagatgttaagctgaaaataa
	********************************************
	<<<<<<<<<<<<<<<<<<<<..................................	F26B1.5 F26B1.5 F26B1.5
celegans	.((((..(((((....(((((....)))))...)))))..))))	1.000 -13.50

celegans

chromosome:I:6309087:6309130:-1

Opposite_strand|Boundary_non-coding|F26B1.5|F26B1.5 ## F26B1.5|protein_coding|F26B1.5|F26B1.5 [Source:RefSeq_peptide;Acc:NP_001040654] ## {SimpF: WRM069bF08 -1 fosmid,WRM0617dB09 -1 fosmid,WRM0615bH10 -1 fosmid,WRM066bD04 -1 fosmid,WRM0611aC11 -1 fosmid,WRM0629aE03 -1 fosmid,WRM0627dG12 -1 fosmid}

block8717 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.682	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	24	-4	5arm_loop	1	nd	0.48	5	1	1	na	na

		reads	miRBase family seed
seed	-------------------------AUUCGUA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------GATTCGTAATGGTAAAGGTAAGG-----------------------------------------------------	23	1
celegans	ggtcacttgcactcgcaactgtaaGATTCGTAATGGTAAAGGTAAGGaaaaaaaggttgggcatctgctgcctcgaggtcagggggcggagttatgtgat
	****************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................................................................	T25G12.11 T25G12.11 T25G12.11
celegans	.(((((.((.((((((..(((.....((((....((((.((((...................))))..)))).))))..)))...))).))))).)))))	0.600 -21.91

celegans

chromosome:X:17237734:17237833:1

Opposite_strand|Boundary_non-coding|T25G12.11|T25G12.11 ## T25G12.11|protein_coding|T25G12.11|T25G12.11 [Source:RefSeq_peptide;Acc:NP_741948] ## {SimpF: WRM0639cH01 1 fosmid,WRM0641dG06 1 fosmid,WRM0637aD03 1 fosmid,WRM0639dB09 1 fosmid,WRM0627dB01 1 fosmid,T25G12.8 1 Expression_profile,WRM0623bB06 1 fosmid}

block6147 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.029	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	4	24	5arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-----AUCUAAG----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----TATCTAAGGAACTTGAAACTT---------------------------------------------------------------------------------	21	1
celegans	gtgaTATCTAAGGAACTTGAAACTTtagaacattttgttggctgaaaatttaattttcttcaaataaatatgttctatgcccaatttttaagttagtttttgatca
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	Y105C5B.21a Y105C5B.21 jac-1
	--------------------------------------------------------------------------------------------------------------------	Y105C5B.21b.1 Y105C5B.21 jac-1
celegans	.((((....((..(((((((((.((((((((((((((((....((((((...))))))....)))))).)))))))).....)).)))))))))..))....))))	1.000 -20.80

celegans

chromosome:IV:16026368:16026473:1

block3652 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.680	no	no	0.15/0.15	20/20/1.00	0.0	0.0	3	0	1	0	8	14	5arm	1	nd	0.30	4	3	1	na	na

		reads	miRBase family seed
seed	---------UUCUAGU-----------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	--------TTTCTAGTTATTTAAAAATC-----------------------------------------------------------	20	3
celegans	tcgcagaaTTTCTAGTTATTTAAAAATCaaattgttagatcactgttgagaaatgagttgaccgaggtgaaggatgaggaggatgtg
	***************************************************************************************
celegans	.((((...(((((.(((.((((....((((.(((((...(((....)))..))))).))))......)))).))).)))))..))))	0.820 -12.30

celegans

chromosome:III:6321182:6321268:1

intergenic ## {SimpF: WRM0632bB12 1 fosmid,WRM0634dD01 1 fosmid,WRM0635aE12 1 fosmid,WRM0640dD03 1 fosmid,WRM0621aF01 1 fosmid,WRM062cB03 1 fosmid,WRM0611aG08 1 fosmid}

block2736 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	8	18	5arm	1	nd	0.21	3	1	1	na	na

		reads	miRBase family seed
seed	---------UCUCCCA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------GTCTCCCATTACGAAACTT-------------------------------------------------------------------	19	1
celegans	taattttcGTCTCCCATTACGAAACTTtttcggcgttcaaaaatgctagcaatgaatgaaagtgagaaattgtgagtagggggatgctgattaa
	**********************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<..................................................................................	C01G12.3 C01G12.3 C01G12.3
celegans	(((((..((((((((.((((((...(((((((.((((((....((....)).))))))....)))))))))))))...))))))))..))))).	0.920 -26.90

celegans

chromosome:II:14582169:14582262:1

Opposite_strand|Boundary_non-coding|C01G12.3|C01G12.3 ## C01G12.3|protein_coding|C01G12.3|C01G12.3 [Source:RefSeq_peptide;Acc:NP_497030] ## {SimpF: WRM0630dH01 1 fosmid,WRM0637cF05 1 fosmid,C01G12.3 1 Expression_profile,WRM067cE01 1 fosmid,WRM0636cB04 1 fosmid}

block4170 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.40/0.40	25/25/0.00	0.0	0.0	3	0	1	0	11	6	3arm	1	nd	0.24	3	3	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------CUUAUUC----------------------------	3	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------GCTTATTCGAGTGCTTGTATCAAGT-----------	25	3
celegans	gagtagaagtgcaaaatgcaggtagtcgaacgggctcatcgtctttgagtcgtttcgtcgaGCTTATTCGAGTGCTTGTATCAAGTatgaaatttca
	*************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................	E03H12.5 E03H12.5 E03H12.5
celegans	(((.....((((...(((((((((.(((((..(((((..((..............))..)))))..))))).)))))))))...)))).....))).	0.980 -33.54

celegans

chromosome:IV:4977208:4977304:-1

intergenic ## {SimpF: WRM0633cB09 -1 fosmid,E03H12.5 -1 Expression_profile,WRM0630aF12 -1 fosmid,WRM065bG06 -1 fosmid}

block5645 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.183	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	0	12	3arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UUUUGUG----------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------TTTTTGTGTGTCCATTTT	18	1
celegans	gagaattgatattggtttttgagagaaaaaaaacgaagttttctttccaaTTTTTGTGTGTCCATTTT
	********************************************************************
celegans	.(((((.(((((.((..((.(((((((((.........))))))))).))..))...))))).)))))	0.990 -11.30

celegans

chromosome:IV:8945591:8945658:1

intergenic ## {SimpF: WRM0626cC12 1 fosmid}

block4168 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.176	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	23	10	3arm	1	nd	0.16	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------UAUGUAG----------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------TTATGTAGGGATGAATGTC-----------------------	19	1
celegans	ttccgcttcatcagagctcactgattcatctcatttttataacaataagataacgtctgtttcgtagTTATGTAGGGATGAATGTCgataaggtgaagttactttggga
	*************************************************************************************************************
celegans	((((((((((((.....((((..(((((((((.....((((((.((.(((((.....))))).)).))))))..))))))))))).))...))))))))......))))	0.550 -23.40

celegans

chromosome:IV:4953078:4953186:-1

intergenic

block655 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.397	no	no	0.50/0.50	24/24/1.00	0.0	0.0	2	0	1	0	4	11	3arm	2	nd	0.21	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UCGAUCU--------------------	2	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------GTCGATCTTCTTATGGTCCCAGGT----	24	2
celegans	atgttttattggaaatatggaaaaggccatgagttgagttgtttcttggctgagtactggctcttcttgtGTCGATCTTCTTATGGTCCCAGGTagca
	**************************************************************************************************
	------------------------------------------------------------------------------------------------------------	ZK337.1a.2 ZK337.1 ZK337.1
	------------------------------------------------------------------------------------------------------------	ZK337.1c.2 ZK337.1 ZK337.1
	------------------------------------------------------------------------------------------------------------	ZK337.1b.2 ZK337.1 ZK337.1
	......................................................................................<<<<<<<<<<<<<<<<<<<<<<	ZK337.6 ZK337.6 nspd-11
celegans	.((((...((((............(((((((((..((.(((......((..((((....))))..)).....)))))..)))))))))))))..))))	0.690 -22.10

celegans

chromosome:I:14993930:14994027:-1

Opposite_strand|Intronic_non-coding|ZK337.1b.2|ZK337.1 ## Opposite_strand|Boundary_non-coding|ZK337.1c.1|ZK337.1 ## ZK337.6|pseudogene|nspd-11| ## ZK337.1|protein_coding|ZK337.1|ZK337.1b [Source:RefSeq_peptide;Acc:NP_493613] ## {SimpF: WRM0627cG12 -1 fosmid,WRM0636cA03 -1 fosmid,WRM0622bD06 -1 fosmid,WRM0617bB11 -1 fosmid,WRM0620bH09 -1 fosmid,WRM0611dF09 -1 fosmid,WRM0631aD09 -1 fosmid,WRM0625bD01 -1 fosmid,WRM068aA07 -1 fosmid,WRM0629cD01 -1 fosmid}

block7650 [novel_lenNOK_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.036	no	no	0.15/0.15	26/26/0.00	0.0	0.0	1	0	1	0	4	1	5arm	1	nd	0.23	4	1	1	na	na

		reads	miRBase family seed
seed	-----UUUCAUU------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GTTTCATTATTTTTTAAAAATTAGAG------------------------------------------	26	1
celegans	aattGTTTCATTATTTTTTAAAAATTAGAGcggcatccaatggttttgaggtgaattgtagttgaggcagtt
	************************************************************************
celegans	((((((((((((((..((((....(((((((...........)))))))..))))..))))).)))))))))	0.990 -16.00

celegans

chromosome:X:1792455:1792526:-1

intergenic ## {SimpF: WRM0634aB01 -1 fosmid,WRM0615cE03 -1 fosmid,WRM065dB05 -1 fosmid,WRM068aC12 -1 fosmid,WRM0639cA04 -1 fosmid,WRM0619dF11 -1 fosmid,WRM0618dG07 -1 fosmid}

block5172 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.077	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	10	5	5arm	1	nd	0.21	2	1	1	na	na

		reads	miRBase family seed
seed	-----------AGUUUAA------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------TAGTTTAACTTTGAGTTTG-------------------------------------------------------	19	1
celegans	gcttttctaaTAGTTTAACTTTGAGTTTGaaattttaaataacttaattttaatcttaaaaatattttcactcttccagaagcc
	************************************************************************************
celegans	((((((..((.(((.((..((((((.((((((((...........)))))))).))))))..)).....))).))..)))))).	0.900 -10.50

celegans

chromosome:IV:17160536:17160619:-1

intergenic ## {SimpF: WRM0632bD12 -1 fosmid,WRM0619bH06 -1 fosmid,WRM0639dA04 -1 fosmid}

block5468 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.015	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	29	-4	5arm_loop	1	nd	0.44	5	1	1	na	na

		reads	miRBase family seed
seed	------------------------------CUACAGC---------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------TCTACAGCCAGTTTTTAC-----------------------------------------------------	18	1
celegans	taaattcatacagttaacgcggatattagTCTACAGCCAGTTTTTACagaccactaaatcgctgcaagacctgaaatctctgcaagctgtgtgcctttaa
	****************************************************************************************************
celegans	((((..(((((((((..((.((((.(((((((.((((..((((............)))).))))..)))).))).)))).))..)))))))))..)))).	0.980 -23.80

celegans

chromosome:IV:5532871:5532970:1

intergenic ## {SimpF: WRM069aH08 1 fosmid,WRM0610cC12 1 fosmid,WRM0619dH04 1 fosmid,WRM0621aB02 1 fosmid,WRM069cB02 1 fosmid,WRM0634cF12 1 fosmid,WRM0625cE08 1 fosmid,WRM0610dA07 1 fosmid}

block2026 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.768	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	18	7	5arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------AAGAGGG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------GAAGAGGGTGTCGACGGCCGG-------------------------------------------------------------	21	1
celegans	tgtggtaaacgaggcttcGAAGAGGGTGTCGACGGCCGGgatattggtgacaaagtattggaatttcatctcgaacatttttagcgcgtggtttttcacc
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	Y48C3A.14 Y48C3A.14 Y48C3A.14
celegans	.((((.....((((((.((..(((((((((((.((((((.((.(((....))).)).)))).......)))))).)))))))..))...)))))))))).	0.620 -20.31

celegans

chromosome:II:13397014:13397113:-1

Opposite_strand|Intronic_coding|Y48C3A.14|Y48C3A.14 ## Y48C3A.14|protein_coding|Y48C3A.14|Y48C3A.14 [Source:RefSeq_peptide;Acc:NP_496822] ## {SimpF: WRM0617bG09 -1 fosmid,CEOP2606 -1 Operon}

block6459 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	18	3	5arm	25	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------AAAUAUA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------CAAATATAGTGACTCTGGCCGTT-------------------------------------------------------	23	1
celegans	gtgactctggccgttcacCAAATATAGTGACTCTGGCCGTTcaccaaaattagtgactctggccgttcactaaatatagttactctggccgttcac
	************************************************************************************************
celegans	((((...((((((...((...((.((((((...((((((.((((........))))...)))))).)))))).))...)).....)))))).))))	0.760 -26.40

celegans

chromosome:V:5285663:5285758:-1

intergenic ## {Repeats: trf 1 20 0 class=trf,trf 2444 2467 0 class=trf,trf 23 46 0 class=trf,trf 829 852 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM068dH05 -1 fosmid}

block2186 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.036	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	11	12	5arm	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	------------AUUUUUA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------GATTTTTAGACCAAAAATT-------------------------------------------------------------	19	1
celegans	gaaaaaatattGATTTTTAGACCAAAAATTccgattttttagcttaaaaatcattgaaaaattggaaaattcggcgaaaatatactttttc
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	Y110A2AL.13 Y110A2AL.13 Y110A2AL.13
celegans	((((((.(((..((((((...((.((..((((((((((((((...........))))))))))))))..)).)).))))))))).))))))	0.970 -15.30

celegans

chromosome:II:2887368:2887458:1

Opposite_strand|Intronic_coding|Y110A2AL.13|Y110A2AL.13 ## Y110A2AL.13|protein_coding|Y110A2AL.13|Y110A2AL.13 [Source:RefSeq_peptide;Acc:NP_494393] ## {SimpF: CEOP2072 -1 Operon,Y110A2A_1898.C 1 Expression_profile}

block2577 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.192	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	23	7	5arm	1	nd	0.14	1	1	1	na	na

		reads	miRBase family seed
seed	------------------------AUUCGCU------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------GATTCGCTCCGTTTCTGGTAC-----------------------------------------------------------------------	21	1
celegans	agaattttgagcaatggaatctgGATTCGCTCCGTTTCTGGTACggtcgctctatataagcgttcctggcagattatcagacgttgacgaaatcttaatgttgcttccacttcta
	*******************************************************************************************************************
celegans	((((....((((((((......(((((((.((((((((((.((.((.((((.......))))..)))).))))......))))..)))))).)))...))))))))....)))).	0.970 -26.50

celegans

chromosome:II:11295053:11295167:1

intergenic ## {SimpF: WRM0634aH09 1 fosmid,WRM0624cC01 1 fosmid,WRM069aD07 1 fosmid,WRM0622aE08 1 fosmid,WRM0630aG08 1 fosmid,WRM0616bE09 1 fosmid,WRM065bG09 1 fosmid,WRM0617cH09 1 fosmid,WRM0626aH03 1 fosmid,WRM0637dD07 1 fosmid,WRM0626bE04 1 fosmid,WRM065bB04 1 fosmid,WRM0613bA02 1 fosmid,WRM069cF05 1 fosmid}

block8653 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	2	9	3arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------GAUAUGU------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	------------------------------------------------TGATATGTTGTTGATGCC--	18	1
celegans	gcgagttaacaacttgtttgttacagaattggtgaaatacgatgctgaTGATATGTTGTTGATGCCgt
	********************************************************************
celegans	(((.(((((((((.....((((((((.((((........)))).))).))))).)))))))))..)))	1.000 -18.50

celegans

chromosome:X:15806571:15806638:1

intergenic

block7813 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.181	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	5	-3	3arm_loop	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------UCGGAUG-----------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------CTCGGATGAGTAGGACCAGG-----	20	1
celegans	ggcgccctgcctgcttatgatatataacttctccaaacaccCTCGGATGAGTAGGACCAGGagtcc
	******************************************************************
celegans	(((..((((((((((((..............(((..........)))))))))))..)))).))).	0.800 -16.63

celegans

chromosome:X:9071845:9071910:-1

intergenic ## {SimpF: WRM0618cD09 -1 fosmid,WRM0628cH04 -1 fosmid,WRM0640aD06 -1 fosmid,WRM065aH11 -1 fosmid,WRM064bH10 -1 fosmid,WRM067aE10 -1 fosmid,WRM0620aD04 -1 fosmid}

block7023 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.743	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	28	12	3arm	1	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------AGAAGAC---------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------GAGAAGACGGTCGAAATCT----------------------------	19	1
celegans	ctttcctcgggttggctggcagaggacggtgttgcatccaacgcagacgacgacggtggtggcgtgcGAGAAGACGGTCGAAATCTgaaaaaaaaaccgaattagtatgggaaa
	******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------	F56E10.4.1 F56E10.4 rps-27
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------	F56E10.4.2 F56E10.4 rps-27
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------	F56E10.4.4 F56E10.4 rps-27
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------	F56E10.4.3 F56E10.4 rps-27
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------	F56E10.4.5 F56E10.4 rps-27
celegans	.(((((((((.........((((.(((.((.((...((..((((..((.((....)).)).))))..)).)).)).)))....)))).........))))........))))).	0.960 -27.57

celegans

chromosome:V:103512:103625:1

Opposite_strand|Boundary_coding|F56E10.4.4|F56E10.4 ## F56E10.4|protein_coding|rps-27|rps-27 encodes a small ribosomal subunit S27 protein. [Source: WormBase] ## {SimpF: WRM0629cC03 1 fosmid,F56E10.4 1 Expression_profile}

block7926 [novel_lenNOK_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	11	27	3arm	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------ACAUAAU---------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------------------GACATAATGATTGACAAG-----------	18	1
celegans	cacttcgttttcgagttgatgatgtgtcgaacacgagttgacaaaccaagaggagtccgaccgatccgattattcaaattcaaccggtttcGACATAATGATTGACAAGaaagcgagtgt
	************************************************************************************************************************
celegans	(((.((((((((..((..((.((((((((((..((.(((((........(((.((((.((....)).)))).)))....)))))))..)))))))).)).))..))..))))))))))).	0.590 -39.20

celegans

chromosome:X:13124424:13124543:-1

intergenic ## {SimpF: WRM061aC12 -1 fosmid,WRM0634cE07 -1 fosmid,WRM0614cA01 -1 fosmid,WRM0638cA06 -1 fosmid,WRM0618aF10 -1 fosmid,WRM0625aC05 -1 fosmid,WRM0612dF12 -1 fosmid,WRM063aF02 -1 fosmid,WRM061aD10 -1 fosmid,WRM0638dA03 -1 fosmid}

block4202 [novel_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.357	no	no	0.62/0.68	19/21/0.80	0.0	0.0	4	0	1	0	2	14	5arm	3	nd	0.29	2	5	1	na	na

		reads	miRBase family seed
seed	---GAUGGCG--------------------------------------------------------------------------	5	novel
		len	cloning frequencies
			CE1
	--CGATGGCGGACAAGTCGGCTT-------------------------------------------------------------	21	4
	--CGATGGCGGACAAGTCGGC---------------------------------------------------------------	19	1
celegans	aaCGATGGCGGACAAGTCGGCTTacatgggcgctggtggctatggatcgggctacatgggatccaatgcttcttcgtcaggtta
	************************************************************************************
	.........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	C24D10.8 C24D10.8 nspd-6
celegans	(((..(((((((.((((.((.((.(((((((.(((((........)))))))).)))).)).))...)))).))))))).))).	0.850 -25.30

celegans

chromosome:IV:5165637:5165720:-1

Same_strand|Boundary_non-coding|C24D10.8|C24D10.8 ## C24D10.8|protein_coding|nspd-6|Nematode Specific Peptide family, group D family member (nspd-6) [Source:RefSeq_peptide;Acc:NP_001076664] ## {SimpF: WRM0633dC11 -1 fosmid,C24D10.8 -1 Expression_profile}

block5299 [novel_shortStem_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	0	-1	5arm_loop	1	nd	0.23	2	1	1	na	na

		reads	miRBase family seed
seed	-AGGAUUU--------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	GAGGATTTGAGTGTAGGCGAAC------------------------------	22	1
celegans	GAGGATTTGAGTGTAGGCGAACgcaacactttcgtgatgcttaatttttctc
	****************************************************
celegans	(((((.((((((((..(((((.........))))).)))))))).)))))..	0.920 -13.40

celegans

chromosome:IV:3052192:3052243:1

intergenic ## {SimpF: WRM0636bG07 1 fosmid}

block84 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.208	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	23	8	3arm	1	nd	0.21	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------GGUUUUU----------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------TGGTTTTTCGCTAGGTTTT-----------------------	19	1
celegans	tcagattttgggagacacactcactgaatttttgcgaatattttaggatttctttttgttctcaaTGGTTTTTCGCTAGGTTTTaatgaaaaaagtgtgtgatctgg
	***********************************************************************************************************
celegans	.((((((.......(((((((((.((((.(((.(((((.(((..(((((........)))))....)))..))))).))).)))).))).....)))))))))))).	0.920 -21.51

celegans

chromosome:I:2070767:2070873:-1

intergenic

block4259 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.097	no	no	0.30/0.30	20/20/1.00	0.0	0.0	2	0	1	0	5	23	3arm	1	nd	0.20	2	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------AAUGAUA-----------------	2	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------------------------TAATGATATATTTTGTGGCG-----	20	2
celegans	cgaatctgtctgtcaaaattaatcatgaatttttttactgtttcaaaatatttattaattgtgaattcctcaactatgtataaTAATGATATATTTTGTGGCGattcg
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	B0273.4a B0273.4 unc-5
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	B0273.4b B0273.4 unc-5
celegans	((((((.(((...((((((..(((((..(((....(((.(((.......((((((.....)))))).....)))...))).))).)))))..)))))).)))))))))	0.890 -18.20

celegans

chromosome:IV:5507074:5507181:-1

Same_strand|Intronic_coding|B0273.4a|B0273.4 ## B0273.4|protein_coding|unc-5|unc-5 encodes a netrin receptor. unc-5 activity is required cell autonomously for dorsalward cell and pioneer motor axon migrations along the body wall that are essential for normal locomotion and gonad development. unc-5 mRNAs are expressed throughout the entire life cycle, with increasing levels seen as animals progess to adulthood. [Source: WormBase] ## {SimpF: WRM062bG09 -1 fosmid,WRM0634cF12 -1 fosmid,WRM069cB02 -1 fosmid,WRM0610dA07 -1 fosmid,WRM0629dG12 -1 fosmid}

block3394 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.771	no	no	0.45/0.45	22/22/1.00	0.0	0.0	2	0	1	0	15	-1	5arm_loop	1	nd	0.41	3	2	1	na	na

		reads	miRBase family seed
seed	----------------AUGGACA------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	---------------CATGGACATAAGAGCAAAGCGT----------------------------------------------	22	2
celegans	gccagctgggaccccCATGGACATAAGAGCAAAGCGTacaattcctgttgatcctcgtgatccggattccaaatcagcttagc
	***********************************************************************************
celegans	((.((((((((..((...((((((..(((...((((.........))))....)))))).)))))..)))....)))))..))	0.440 -15.40

celegans

chromosome:III:178782:178864:1

intergenic ## {SimpF: WRM068dG09 1 fosmid,WRM0621dC05 1 fosmid}

block7724 [novel_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.328	no	no	0.35/0.35	20/20/1.00	0.0	0.0	7	0	1	0	18	-2	5arm_loop	1	nd	0.60	4	7	1	na	na

		reads	miRBase family seed
seed	-------------------AACUUGC------------------------------------------	7	novel
		len	cloning frequencies
			CE1
	------------------TAACTTGCCTTGTTCGAAAT------------------------------	20	7
celegans	gcaatttatttttcccagTAACTTGCCTTGTTCGAAATatttcatactacaaaactggttgaatcgct
	********************************************************************
celegans	((.(((((......(((((...(((....((..(((....)))..))..))).))))).))))).)).	0.600 -8.10

celegans

chromosome:X:6345872:6345939:-1

intergenic ## {SimpF: WRM0629aF09 -1 fosmid,WRM0629cG05 -1 fosmid,WRM068cE03 -1 fosmid,WRM0621dA04 -1 fosmid,WRM063bF02 -1 fosmid}

block6297 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.629	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	9	23	3arm	1	nd	0.19	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UUAUGGG----------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------------TTTATGGGATTAGCACAAGCT---------	21	1
celegans	tgttcaaagaatcgcttttattactctatatgagcgtcatttattgggaagaagacaaaatcgtctagggcccaccaaggttacaTTTATGGGATTAGCACAAGCTttattggat
	*******************************************************************************************************************
celegans	.((((((.(((..((((...(((.(((.((((((.((.((((..((((....((((......))))....))))...)))).)).))))))))).)))...))))))).))))))	0.480 -21.30

celegans

chromosome:MtDNA:1807:1921:1

intergenic

block4310 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.309	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	4	0	5arm	1	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	-----AGCUGAG---------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GAGCTGAGGTAGAAGAAGCCGG-------------------------------------	22	1
celegans	tcttGAGCTGAGGTAGAAGAAGCCGGcattctggttgtatctgtaaatataacagtgtttaga
	***************************************************************
celegans	(((...((((..(((..(((((((((....))))))...))).....)))..))))....)))	0.840 -12.20

celegans

chromosome:IV:6353974:6354036:-1

intergenic

block1168 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.170	no	no	0.30/0.32	23/25/0.33	0.0	0.7	3	0	1	0	8	-2	5arm	2	nd	0.39	4	3	1	na	na

		reads	miRBase family seed
seed	---------AUAUUCA------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	--------GATATTCATACTTGACAAAACCAAG-------------------------------------	25	2
	--------GATATTCATACTTGACAAAACCA---------------------------------------	23	1
celegans	atcactttGATATTCATACTTGACAAAACCAAGaactgaattgtcaagcaaaaactgatactgattgtga
	**********************************************************************
	<<<<<<<<<<<<<<<<<<<<<<..........................................................	F35E2.10 F35E2.10 F35E2.10
celegans	.((((.((..((((....((((((((...((.....))..))))))))........))))..))..))))	0.440 -9.80

celegans

chromosome:I:11722910:11722979:1

Opposite_strand|Boundary_non-coding|F35E2.10|F35E2.10 ## F35E2.10|pseudogene|F35E2.10| ## {SimpF: WRM0614aA10 1 fosmid,WRM063dC09 1 fosmid,WRM0635dH04 1 fosmid,WRM0620dC11 1 fosmid,WRM0625aF01 1 fosmid,WRM065bC10 1 fosmid,WRM0640aC01 1 fosmid}

block8299 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.430	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	18	3	5arm	25	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------AAAUAUA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------CAAATATAGTGACTCTGGCCGTT-------------------------------------------------------	23	1
celegans	gtgactctggccgttcacCAAATATAGTGACTCTGGCCGTTcaccaagattagtgactctgaccgttcaccataaatagtgactctggccgttcgc
	************************************************************************************************
celegans	((((...((((((.((((....(((.((((...(((.((.((((........))))...)).))).)))).)))....))))...)))))).))))	0.870 -22.20

celegans

chromosome:X:5542308:5542403:1

intergenic ## {Repeats: trf 59 82 0 class=trf} ## {SimpF: WRM0625aF10 1 fosmid,WRM0633dC07 1 fosmid,WRM0624aC10 1 fosmid}

block4477 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.047	no	no	0.27/0.27	26/26/0.00	0.0	0.0	1	0	1	0	10	0	3arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CAAAUGA----------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------GCAAATGATTTGAATTCTTGATTCTT----------	26	1
celegans	tgattcagcagtttcacaacttttttgatcaggtgttttcattattttatatGCAAATGATTTGAATTCTTGATTCTTctgatcttca
	****************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................................................	W08D2.8 W08D2.8 kin-21
celegans	.((.((((.((..(((......(((.(((((..(((................)))..))))).)))....)))..)).))))...)).	0.840 -14.79

celegans

chromosome:IV:9832863:9832950:-1

intergenic ## {SimpF: WRM0637cA06 -1 fosmid,WRM0625dA07 -1 fosmid,WRM067bF08 -1 fosmid,WRM0621bB05 -1 fosmid}

block3499 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.876	no	no	0.42/0.47	19/26/0.00	0.0	0.0	5	0	1	0	6	1	5arm	1	nd	0.19	3	6	1	na	na

		reads	miRBase family seed
seed	-------UUGAGAA------------------------------------------------------------	6	novel
		len	cloning frequencies
			CE1
	------GTTGAGAAAGTGGCTTGCTAAGTGTT------------------------------------------	26	5
	------GTTGAGAAAGTGGCTTGCT-------------------------------------------------	19	1
celegans	cgtattGTTGAGAAAGTGGCTTGCTAAGTGTTgaattcaatcaatagacgatgctgtctgtatctgaaaatcgc
	**************************************************************************
celegans	((.....((.(((.((((((((((((...((((....))))...))).))).)))).))...))).))...)).	0.420 -10.90

celegans

chromosome:III:3830844:3830917:1

intergenic ## {SimpF: WRM065cE05 1 fosmid,C36A4.10 1 Expression_profile,WRM0624bD07 1 fosmid,WRM0640dH02 1 fosmid,WRM063dB07 1 fosmid,WRM0626aB12 1 fosmid,WRM062aH09 1 fosmid,WRM0634bH05 1 fosmid,WRM0613aC06 1 fosmid}

block2009 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.407	no	no	0.32/0.32	22/22/1.00	0.0	0.0	1	0	1	0	7	-4	3arm_loop	1	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------UAUGAGA---------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------GTATGAGACAGATTCATTTTGT-------	22	1
celegans	tgcctttttggaaaataaagcaatttctcaGTATGAGACAGATTCATTTTGTaaaagcg
	***********************************************************
celegans	.((..(((((.(((((.((......((((.....))))....)).))))).))))))).	0.860 -8.20

celegans

chromosome:II:13050680:13050738:-1

intergenic ## {SimpF: WRM0617bB03 -1 fosmid,WRM065aF11 -1 fosmid,WRM0626cB12 -1 fosmid,WRM0631aG09 -1 fosmid}

block4107 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.171	no	no	0.54/0.54	24/24/1.00	0.0	0.0	1	0	1	0	1	31	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	--AGCAUUU-------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-GAGCATTTGAGCGAAGGGATGGTC---------------------------------------------------------------------------------------------	24	1
celegans	gGAGCATTTGAGCGAAGGGATGGTCtacagtaaagttgaggggtgcatcaagggattcacaagtccattttatttgctctccttttcgacatatccatatcccaatgtgaaggcgctt
	**********************************************************************************************************************
celegans	.((((.(((..(((..((((((.......((......((((((.(((.....((((......))))........))).))))))....)).......))))))..)))..))).))))	0.930 -30.86

celegans

chromosome:IV:3897069:3897186:-1

intergenic ## {SimpF: WRM0641bD04 -1 fosmid,WRM0634bC03 -1 fosmid,WRM0628dD05 -1 fosmid,WRM068aF02 -1 fosmid}

block2377 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.752	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	4	38	5arm	1	nd	0.38	5	1	1	na	na

		reads	miRBase family seed
seed	-----CACAGAA------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GCACAGAATGTTTCAGCCAAA-----------------------------------------------------------------------------------------------	21	1
celegans	gtttGCACAGAATGTTTCAGCCAAActagaatataatgaaatttcttattgtcaacagaacttgaaaaaggattttacgatttattagattctcagccaacaatattttgaatgataaca
	************************************************************************************************************************
celegans	(((..(((((((((((...((......(((((.(((((((...((.((..(((.......(((....))))))..)).))))))))).)))))..))....)))))))))..))..))).	0.480 -14.61

celegans

chromosome:II:7489381:7489500:1

intergenic ## {SimpF: WRM0636aC11 1 fosmid,WRM0613dH09 1 fosmid,WRM0621bG05 1 fosmid,WRM0629bF07 1 fosmid,WRM0621dE08 1 fosmid,WRM0611cE04 1 fosmid,WRM0633aE12 1 fosmid}

block6385 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.639	no	no	0.39/0.39	18/23/0.20	0.0 0.0	0.0 0.0	1 4	0 0	1 1	0 0	21 17	-5 4	3arm_loop 3arm	1 1	nd nd	0.35 0.22	4 1	5	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------AAUUGGC---------------------------	4	novel
seed	-------------------------------------------------AUCGGUU------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------------GAATTGGCATGTTTCTCT-----------------	18	4
	------------------------------------------------GATCGGTTTGAATTGGCATGTTT---------------------	23	1
celegans	ggtactcgtcgaagttttccgaggaaacgaagttccactttccaacaagatcggtttGAATTGGCATGTTTCTCTgaaaaaaagattatatt
	********************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------	Y40B10A.1a Y40B10A.1 lbp-9
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........................	Y40B10A.1b Y40B10A.1 lbp-9
celegans	.......(((....(((((.((((((.....((.(((..(((.(((.......))).))).))).)).)))))).)))))...)))......	0.910 -15.90

celegans

chromosome:V:2068545:2068636:-1

Opposite_strand|Boundary_coding|Y40B10A.1a|Y40B10A.1 ## Opposite_strand|Boundary_non-coding|Y40B10A.1b|Y40B10A.1 ## Y40B10A.1|protein_coding|lbp-9|Fatty acid-binding protein homolog 9. [Source:UniProtKB/Swiss-Prot;Acc:Q965W1] ## {SimpF: Y40B10A.H -1 Expression_profile}

block3072 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.38/0.38	26/26/0.00	0.0	0.0	1	0	1	0	18	11	3arm	1	nd	0.15	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------CGUCUCU------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------ACGTCTCTTCACTCTCTCACTATTTT------------------	26	1
celegans	aagaggttttagagaaatcagagatagtaggtagagtgtggagacccaggcagtggtctttggcatctcttttACGTCTCTTCACTCTCTCACTATTTTcgttctttttccactttt
	*********************************************************************************************************************
celegans	(((.((....((((((....((((((((.((.((((((.((((((..(((.((..((.....))..)))))....)))))).)))))))).))))))))..))))))..)).)))..	0.970 -34.50

celegans

chromosome:III:7153834:7153950:-1

intergenic ## {SimpF: WRM062bD05 -1 fosmid,WRM0637cC05 -1 fosmid,WRM0630bD07 -1 fosmid,WRM0635aD11 -1 fosmid,WRM063cE08 -1 fosmid,WRM0635dF05 -1 fosmid,WRM0620bD08 -1 fosmid,WRM0615dC02 -1 fosmid,WRM065cA12 -1 fosmid}

block6315 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.104	no	no	0.36/0.36	28/28/0.00	0.0	0.0	1	0	1	0	19	11	3arm	1	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UUGCUAU---------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------ATTGCTATAGAAGGTTTAAGAGGTTACC-------------------	28	1
celegans	ctatacgaattatttatttttacactattttctgtgttatttatttcttttgcttgaggtaaggatATTGCTATAGAAGGTTTAAGAGGTTACCataattttttcgttataga
	*****************************************************************************************************************
celegans	(((((((((....((((....((.(((((((((((((..((((((((........))))))))......)).)))))))))...))..))....))))....))))).)))).	0.510 -19.30

celegans

chromosome:MtDNA:5783:5895:1

intergenic

block3974 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.098	no	no	0.56/0.56	25/25/0.00	0.0	0.0	3	0	1	0	13	11	3arm	1	23	0.28	3	3	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------GUGUGAC------------------------------	3	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------------AGTGTGACATGTCGTCCAGCTGTGG-------------	25	3
celegans	tcgttggatatggcccgtcaggtaggaaattttcgattttccactatttttttttctaaaatcagaaaatttgcAGTGTGACATGTCGTCCAGCTGTGGatcgtgccaaaga
	****************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	T12D8.1 T12D8.1 set-16
celegans	((.((((.((((..(((.(((...(((......((((..((((((......((((((......)))))).....)))).))...)))))))..))))))..)))))))).))	0.460 -27.10

celegans

chromosome:III:13644000:13644111:1

Same_strand|Boundary_coding|T12D8.1|T12D8.1 ## T12D8.1|protein_coding|set-16|Temporarily Assigned Gene name family member (tag-350) [Source:RefSeq_peptide;Acc:NP_499819] ## {SimpF: WRM066cA03 1 fosmid,WRM0630dA02 1 fosmid,WRM0622cC11 1 fosmid,WRM0640dG12 1 fosmid,WRM0611cA01 1 fosmid,WRM0614aE06 1 fosmid}

block8144 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.371	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	27	4	3arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------GACACGU-------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------CGACACGTTCTACGAGGG---------------------------	18	1
celegans	ttggactttttcgctggtttggtggagctggacgatggattctttggagcaaccgcatcagatgacgaagCGACACGTTCTACGAGGGaattgactagtttcatcatcttatcca
	*******************************************************************************************************************
celegans	.((((.........(((..((((((((((((.((((...(((((((((((...(((.((.......)).)))....)))))).))))).)))).))))))))))))..)))))))	0.620 -30.80

celegans

chromosome:X:1012093:1012207:1

intergenic ## {SimpF: WRM0636dA04 -1 fosmid,WRM0625cH06 1 fosmid,WRM0621dF04 -1 fosmid,WRM0621bD10 -1 fosmid,WRM0631cA02 -1 fosmid,WRM0625aB08 -1 fosmid,WRM0627dH08 -1 fosmid,WRM0631bF01 -1 fosmid,WRM0625aG07 1 fosmid}

block6149 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	16	7	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------CUGAGUA------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TCTGAGTAGCAATTTTTG--------------------------------------------------------------------------	18	1
celegans	tttatagtttatatgaTCTGAGTAGCAATTTTTGaaaggaacaacaacacaaaaacttcaaatttcttgcaaatatgtgaattttacgatgtttataaactttttaaa
	************************************************************************************************************
celegans	.(((.((((((((..(((((((..(((...((((.((((((.....................)))))).))))..)))....)))).)))...))))))))...))).	0.670 -12.80

celegans

chromosome:IV:16032955:16033062:1

intergenic ## {SimpF: WRM0613dE04 1 fosmid}

block955 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.101	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	8	5	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------UUUUUUU------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------CTTTTTTTTCGAAGCATT--------	18	1
celegans	cacgagatttcgaaaaattttgaagaattttgaaactttttCTTTTTTTTCGAAGCATTtttagtgc
	*******************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	W02D3.3 W02D3.3 mec-6
celegans	(((((((((((((((((....((((((.........))))))...))))))))))...)))).))).	0.780 -11.60

celegans

chromosome:I:6727545:6727611:1

Same_strand|Intronic_coding|W02D3.3|W02D3.3 ## W02D3.3|protein_coding|mec-6|mec-6 is homologous to the human PARAOXONASE 1 gene (PON1, OMIM:168820), which in some allelic forms is associated with susceptibility to coronary artery disease. MEC-6 protein interacts physically with the MEC-4 degenerin ion channel, is colocalized with it in vivo, and is required for MEC-4 punctate expression along touch-receptor neural processes. [Source: WormBase] ## {Repeats: dust 53620 53629 0 class=dust} ## {SimpF: WRM0625bB07 1 fosmid,WRM0632cE11 1 fosmid,WRM068bG01 1 fosmid,WRM0612cG05 1 fosmid,WRM0610bD11 1 fosmid}

block4215 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.015	no	no	0.58/0.58	26/26/0.00	0.0	0.0	1	0	1	0	8	16	5arm	2	nd	0.23	4	1	1	na	na

		reads	miRBase family seed
seed	---------CAGAAUG------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------GCAGAATGGGCCATGGCGACTTGTTG------------------------------------------------------------------------------------	26	1
celegans	cagattggGCAGAATGGGCCATGGCGACTTGTTGaaggagttatgagaactcgcagtgaagattatgacaaaaccttctcaatttatagtagccttcttatctctgtcctagatctga
	**********************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<.....................................................................................................	Y59E9AR.1 Y59E9AR.1 Y59E9AR.1
celegans	((((((((((((((((((....(((.(((.((((((((.(((((((..((.....)).....)))))))....)))..)))))....))).)))..))))).)))))))..)))))).	0.960 -35.20

celegans

chromosome:IV:5249321:5249438:-1

block2733 [novel_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.570	no	no	0.32/0.35	19/23/0.80	0.0	1.8	5	0	1	0	16	18	5arm	1	nd	0.42	4	5	1	na	na

		reads	miRBase family seed
seed	-----------------AAAUGUG------------------------------------------------------------------------------------------------	5	novel
		len	cloning frequencies
			CE1
	----------------GAAATGTGTGAAGCTATTTGAAG---------------------------------------------------------------------------------	23	2
	----------------GAAATGTGTGAAGCTATTT-------------------------------------------------------------------------------------	19	1
	----------------GAAATGTGTGAAGCTATTTG------------------------------------------------------------------------------------	20	1
	----------------GAAATGTGTGAAGCTATTTGA-----------------------------------------------------------------------------------	21	1
celegans	gcattctctattgactGAAATGTGTGAAGCTATTTGAAGaaagttaaggaatattggaaaactaatttgcttgaggatgacgtggaaagtggaacaagtgggaggatattggagggtcgc
	************************************************************************************************************************
	<<<<<<<<<.........................................................................................................................	F26H11.5 F26H11.5 exl-1
celegans	((((((((((.((.((...((.(((....((((((.......(((.(((...(((((....)))))...)))...)))........)))))).))).))....)).)).)))))))).))	0.910 -20.36

celegans

chromosome:II:14413364:14413483:1

intergenic ## {SimpF: WRM062bF04 1 fosmid,WRM0627dC04 1 fosmid,F26H11.5 1 Expression_profile,WRM0620bB02 1 fosmid,WRM0610bH04 1 fosmid}

block5841 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.210	no	no	0.33/0.35	18/20/0.50	0.0	1.0	2	0	1	0	1	36	5arm	2	nd	0.15	1	2	1	na	na

		reads	miRBase family seed
seed	--AUUGGAU---------------------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-TATTGGATTTAGATCTGG-----------------------------------------------------------------------------------------------------	18	1
	-TATTGGATTTAGATCTGGAG---------------------------------------------------------------------------------------------------	20	1
celegans	tTATTGGATTTAGATCTGGAGagaacattgttttgaaataaactgacaacttggatgctaaaatcatctgagaaaattataaattttcgaaaaaaaaattttcaaagtcaaaagttggta
	************************************************************************************************************************
celegans	.((((((.(((.(((.((((((........((((((((...........((..((((.......))))..))............))))))))......))))))..))).))).))))))	0.400 -16.44

celegans

chromosome:IV:13651721:13651840:1

intergenic ## {SimpF: WRM067bD01 1 fosmid,WRM065cG01 1 fosmid,WRM0636aH06 1 fosmid,WRM0634dB07 1 fosmid,WRM0633dA12 1 fosmid}

block7871 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	1	39	5arm	1	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	--UUAAAGC------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-TTTAAAGCCAGAATCAAAA-------------------------------------------------------------------------------------	19	1
celegans	gTTTAAAGCCAGAATCAAAActagaatcaaagccagaaaaaaatacgtatgcagtttctagagaagaaacgggctattttagtttaaaaatttgttatttacaca
	*********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F13D2.1 F13D2.1 F13D2.1
celegans	((.((((..((((....((((((((((...((((...................((((((.....)))))).)))))))))))))).....))))...)))).)).	0.660 -18.35

celegans

chromosome:X:11170947:11171051:-1

Same_strand|Intronic_coding|F13D2.1|F13D2.1 ## F13D2.1|protein_coding|F13D2.1|F13D2.1 [Source:RefSeq_peptide;Acc:NP_509864] ## {SimpF: WRM0637cA02 -1 fosmid,WRM0641dG01 -1 fosmid,WRM0614aH03 -1 fosmid,WRM0610aC09 -1 fosmid,WRM0623dG11 -1 fosmid,WRM062bF07 -1 fosmid}

block5452 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.397	no	no	0.36/0.36	25/25/0.00	0.0	0.0	2	0	1	0	6	12	5arm	2	nd	0.24	2	2	1	na	na

		reads	miRBase family seed
seed	-------UAAAGGU------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	------GTAAAGGTTGTTGGATGATTGTATG-------------------------------------------------------------	25	2
celegans	tcttctGTAAAGGTTGTTGGATGATTGTATGagtccgagaagcacttgagccactaggaacgtgctaggaatgcagcgggtttgcattgaag
	********************************************************************************************
celegans	.(((((((.(((.((((((.((..(((((((..(((.((..((......))..)).))).))))).))..)).)))))).))))))..))))	0.990 -22.30

celegans

chromosome:IV:5384180:5384271:1

intergenic ## {SimpF: WRM0621dF11 1 fosmid,WRM0621cG07 1 fosmid,WRM0612cF05 1 fosmid,WRM0612dE10 1 fosmid,WRM061aH06 1 fosmid,WRM066cH08 1 fosmid,WRM0636bF04 1 fosmid,WRM0614bB03 1 fosmid}

block5542 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.146	no	no	0.26/0.29	19/21/0.20	0.0	0.0	4	0	1	0	0	10	5arm	1	nd	0.26	3	5	1	na	na

		reads	miRBase family seed
seed	-GAUGAUU------------------------------------------------------------	5	novel
		len	cloning frequencies
			CE1
	TGATGATTTCATATGTAGT-------------------------------------------------	19	4
	TGATGATTTCATATGTAGTAG-----------------------------------------------	21	1
celegans	TGATGATTTCATATGTAGTagtttatatgtagcaaccgttccagactacgcattttctaaactatcaa
	********************************************************************
celegans	(((((.(((...((((.(((((((..(((.......)))...))))))))))).....))).))))).	0.990 -10.90

celegans

chromosome:IV:6810795:6810862:1

intergenic ## {SimpF: WRM0637aC09 1 fosmid,WRM068cH03 1 fosmid,WRM0634dG10 1 fosmid,WRM061cF04 1 fosmid}

block2292 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.065	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	4	8	5arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	-----CUAAUAG------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----TCTAATAGAAAAAGTGAGCT------------------------------------------------	20	1
celegans	ctttTCTAATAGAAAAAGTGAGCTtttaggtaaagtttacctgcaataaagagcattgagactgtagcaaag
	************************************************************************
	---------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	EGAP2.3.1 EGAP2.3 pho-1
	---------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	EGAP2.3.2 EGAP2.3 pho-1
celegans	((((.((.((((....((((..((((((((((.....))))))....))))..))))....)))))).))))	0.910 -14.30

celegans

chromosome:II:5233359:5233430:1

Opposite_strand|Intronic_coding|EGAP2.3.2|EGAP2.3 ## EGAP2.3|protein_coding|pho-1|pho-1 encodes the major C. elegans intestinal acid phosphatase. as loss of PHO-1 function via RNA-mediated interference (RNAi) does not result in any abnormalities, PHO-1 may function redundantly with other acid phosphatases. PHO-1 intestinal expression appears to be positively regulated by CKI-1, a cyclin-dependent kinase inhibitor, and negatively regulated by POP-1, a TCF/LEF transcription factor. PHO-1 is expressed along the intestinal brush border in all gut cells except the most anterior int-1 and int-2 cells, beginning at the three-fold stage of embryogenesis. [Source: WormBase] ## {SimpF: WRM0630bE03 1 fosmid,WRM0615aG03 1 fosmid,WRM0626bB12 1 fosmid,WRM0618bH03 1 fosmid}

block3092 [novel_cloningOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.509	no	no	0.36/0.40	22/25/0.83	0.7	1.8	6	0	1	0	5	20	5arm	1	nd	0.39	2	6	1	na	na

		reads	miRBase family seed
seed	------AGAAUUG----------------------------------------------------------------------------------------------------	4	novel
seed	--------AAUUGUU--------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-----GAGAATTGTTTGAATACCAAGC--------------------------------------------------------------------------------------	22	2
	-------GAATTGTTTGAATACCAAGCGTC-----------------------------------------------------------------------------------	23	2
	-----GAGAATTGTTTGAATACCAAGCGTC-----------------------------------------------------------------------------------	25	1
	-----GAGAATTGTTTGAATACCAAGCGT------------------------------------------------------------------------------------	24	1
celegans	ttcttGAGAATTGTTTGAATACCAAGCGTCacacagctcaaatcggaaatgattgaatttttttttgaatttgtgaaatattgaaactgggagattttgaataaagataagag
	*****************************************************************************************************************
celegans	.(((((....(((((..((..((.((..((((((((.(((((..((((((......)))))).)))))..)))))......)))..)).))....))..)))))...))))).	0.920 -18.20

celegans

chromosome:III:7662128:7662240:-1

intergenic ## {SimpF: WRM0612dH07 -1 fosmid,WRM0623dA11 -1 fosmid,WRM064aE12 -1 fosmid,WRM061cG07 -1 fosmid,WRM0633bE08 -1 fosmid,WRM0635bC03 -1 fosmid,WRM0635cC06 -1 fosmid,WRM0620cB01 -1 fosmid,WRM0613dD12 -1 fosmid,WRM0622cC10 -1 fosmid,WRM067aF03 -1 fosmid,WRM0617bB04 -1 fosmid,WRM0613bE05 -1 fosmid,WRM069bE08 -1 fosmid}

block5151 [novel_shortStem_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	0	-3	3arm_loop	1	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------AUGAUUG----------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------GATGATTGTTGGGTCGCCTTTTGT	24	1
celegans	agcaaatgcaggcgagaacgacgattatGATGATTGTTGGGTCGCCTTTTGT
	****************************************************
celegans	.(((((...((((((...((((((((.....))))))))..)))))))))))	0.920 -18.60

celegans

chromosome:IV:16867530:16867581:-1

intergenic ## {SimpF: WRM0621bE04 -1 fosmid}

block3589 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.364	no	no	0.62/0.62	24/24/1.00	0.0	0.0	1	0	1	0	0	-4	5arm_loop_3arm	2	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-AAAAGCG--------------------------------------	1	novel
		len	cloning frequencies
			CE1
	CAAAAGCGACCGCGTGGTGCAGTG----------------------	24	1
celegans	CAAAAGCGACCGCGTGGTGCAGTGgccggaccgcgcttgtgagttg
	**********************************************
celegans	(((..((((..(((((((((....))...)))))))))))...)))	1.000 -14.10

celegans

chromosome:III:5211387:5211432:1

intergenic ## {SimpF: WRM0613bD07 1 fosmid,WRM067cB03 1 fosmid,WRM0621cH09 1 fosmid,WRM0641dA10 1 fosmid}

block4017 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.274	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	24	2	5arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------AUAACAG--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------GATAACAGGAAGGTTGGG----------------------------------------------------	18	1
celegans	catctgaataataataataatatgGATAACAGGAAGGTTGGGaaaagcttcgaacaaccggtcgggaattcacagtgaatttgttggggggtgc
	**********************************************************************************************
celegans	(((((...((((((........(((((....((..(((((.(((....)))...)))))..))....)))))........))))))..))))).	0.780 -17.29

celegans

chromosome:IV:1296739:1296832:-1

intergenic ## {SimpF: WRM0612cE01 -1 fosmid}

block6670 [novel_lenNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	4	4	3arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------UAGUUAG--------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------GTAGTTAGGGCATTCGCT----	18	1
celegans	ttcagtcagtgcaacttcgatcagacgattGTAGTTAGGGCATTCGCTgaaa
	****************************************************
	.................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------	C29A12.3b C29A12.3 lig-1
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------	C29A12.3a C29A12.3 lig-1
celegans	((((((.(((((((((.(((((....))))).))))...))))).)))))).	1.000 -18.60

celegans

chromosome:V:10814906:10814957:-1

Opposite_strand|Boundary_non-coding|C29A12.3b|C29A12.3 ## Opposite_strand|Boundary_coding|C29A12.3a|C29A12.3 ## C29A12.3|protein_coding|lig-1|lig-1 is orthologous to the human gene LIM HOMEOBOX PROTEIN 3 ISOFORM B (LIG1. OMIM:600577), which when mutated leads to disease. [Source: WormBase] ## {SimpF: WRM0638cB12 -1 fosmid,C29A12.3 -1 Expression_profile,WRM067cC08 -1 fosmid,WRM0618aF08 -1 fosmid,WRM062aC01 -1 fosmid,WRM066cE03 -1 fosmid,WRM063dD05 -1 fosmid,WRM0621aD04 -1 fosmid}

block4838 [novel_5varHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.546	no	no	0.50/0.52	21/24/1.00	2.8	3.8	4	0	1	0	7	17	5arm	2	nd	0.29	4	4	1	na	na

		reads	miRBase family seed
seed	--------UGAUGUG---------------------------------------------------------------------------------------------------------	2	novel
seed	----------------AUGAUGG-------------------------------------------------------------------------------------------------	1	novel
seed	-----------UGUGGAU------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------ATGATGTGGATGATGGCGTGGAAG-----------------------------------------------------------------------------------------	24	1
	-------ATGATGTGGATGATGGCGTGG--------------------------------------------------------------------------------------------	21	1
	----------ATGTGGATGATGGCGTGGAAG-----------------------------------------------------------------------------------------	21	1
	---------------GATGATGGCGTGGAAGAAGTTG-----------------------------------------------------------------------------------	22	1
celegans	ggcgaggATGATGTGGATGATGGCGTGGAAGAAGTTGatgaagaggcagggtccggttgggagaatatctttttgttttggggtaggtttccacggcggccgacaatttccgagtttcgc
	************************************************************************************************************************
celegans	.(((((((...(((((....((.((((((((.....((..((((((.....(((.....))).....))))))..))..........)))))))).)).)).)))...))).....))))	0.450 -31.16

celegans

chromosome:IV:14780738:14780857:-1

intergenic ## {Repeats: trf 5 35 0 class=trf} ## {SimpF: oe = 1.21 0 CpG}

block261 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.340	no	no	0.35/0.38	21/26/0.43	2.7	2.4	7	0	1	0	6	14	5arm	2	nd	0.38	5	7	1	na	na

		reads	miRBase family seed
seed	---------------UUUGAUG----------------------------------------------------------------------------------------	4	novel
seed	--------UUGAUUG-----------------------------------------------------------------------------------------------	1	novel
seed	-----------AUUGUUU--------------------------------------------------------------------------------------------	1	novel
seed	-------GUUGAUU------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------GTTTGATGGTCTATCTAGTAG---------------------------------------------------------------------------	21	2
	--------------GTTTGATGGTCTATCTAGTAGAGAAG----------------------------------------------------------------------	26	2
	-------GTTGATTGTTTGATGGTCTATCTAGT-----------------------------------------------------------------------------	26	1
	----------GATTGTTTGATGGTCTATCTAGTAG---------------------------------------------------------------------------	25	1
	------GGTTGATTGTTTGATGGTCTATCT--------------------------------------------------------------------------------	24	1
celegans	atttccGGTTGATTGTTTGATGGTCTATCTAGTAGAGAAGacgagggttagactgatttttaaggaaaatcttcagcttttatagtgagcattgatgaccttttgagata
	**************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................................................	T27A3.4 T27A3.4 T27A3.4
celegans	(((((.(((((.....((((((.((...(((....(((((..(((((((...((........))...)))))))..))))).))).)).)))))))))))....))))).	0.810 -21.90

celegans

chromosome:I:6098902:6099011:-1

Opposite_strand|Boundary_non-coding|T27A3.4|T27A3.4 ## T27A3.4|protein_coding|T27A3.4|T27A3.4 [Source:RefSeq_peptide;Acc:NP_491760] ## {SimpF: oe = 1.34 0 CpG,T27A3.4 -1 Expression_profile,WRM0617cA08 -1 fosmid,WRM0632dE08 -1 fosmid,WRM0640cD10 -1 fosmid,WRM0623cH06 -1 fosmid}

block862 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.186	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	3	8	5arm	1	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	----ACUUUUC--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---GACTTTTCTTGGTCTTCTCTATC-----------------------------------------------	23	1
celegans	ttaGACTTTTCTTGGTCTTCTCTATCcgatttcggcgttgattttaaagatggtgccgacgaagatttctgaa
	*************************************************************************
celegans	(((((....((((.(((....(((((.((..(((....)))..))...)))))....))).))))..))))).	0.740 -14.90

celegans

chromosome:I:5487940:5488012:1

intergenic ## {SimpF: WRM0623cB08 1 fosmid,WRM0633dH04 1 fosmid,WRM0636cF03 1 fosmid,WRM066cC07 1 fosmid,WRM0633aG08 1 fosmid,WRM0613bH03 1 fosmid}

block6769 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	6	-2	5arm_loop	1	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-------AUUCUCU------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GATTCTCTCGTGTTCAGCTGTC----------------------------------	22	1
celegans	caaattGATTCTCTCGTGTTCAGCTGTCatcatcagaggaatcgagcaaagatctagtttga
	**************************************************************
celegans	(((((((..(((((((.((((..(((.......)))..))))))))...)))..))))))).	1.000 -17.10

celegans

chromosome:V:13931632:13931693:-1

intergenic ## {SimpF: WRM0620cE11 -1 fosmid,WRM0634aF11 -1 fosmid,WRM0628bE12 -1 fosmid,WRM0635bB01 -1 fosmid,WRM0622dC05 -1 fosmid}

block7141 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.251	no	no	0.30/0.30	23/23/1.00	0.0	0.0	1	0	1	0	28	2	3arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------UUAGAGA-------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------ATTAGAGATTAATCAGCACTTTC----------------------------	23	1
celegans	tggtgttgaaatggtacacgatagttggggtgaagtttgattttttaaaaatattggcaatATTAGAGATTAATCAGCACTTTCaaattccatctcgtcggattcttcacca
	****************************************************************************************************************
	..........................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	K09H11.11 K09H11.11 K09H11.11
celegans	.((((..(((........((((((.(((((((((((((((((..((...(((((.....)))))...))..)))))).)))))...)))))).)).))))..)))..)))).	0.970 -23.30

celegans

chromosome:V:5754585:5754696:1

Opposite_strand|Boundary_non-coding|K09H11.11|K09H11.11 ## K09H11.11|protein_coding|K09H11.11|K09H11.11 [Source:RefSeq_peptide;Acc:NP_001033495] ## {SimpF: WRM0634bH03 1 fosmid,WRM0641cE05 1 fosmid,WRM066cD09 1 fosmid,WRM0640bE01 1 fosmid}

block4245 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.472	no	no	0.38/0.41	22/26/0.67	0.3	2.3	3	0	1	0	0	4	3arm	1	nd	0.48	4	3	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------UUGAUAU------------------	2	novel
seed	------------------------------------------UGAUAUG-----------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------GTTGATATGCAGCCGTTATGTT----	22	1
	-----------------------------------------TTGATATGCAGCCGTTATGTTATC-	24	1
	----------------------------------------GTTGATATGCAGCCGTTATGTTATCA	26	1
celegans	tgaactcacctcggcgttatgaatttcagtcatttcgcttGTTGATATGCAGCCGTTATGTTATCA
	******************************************************************
	----------------------------------------------------------------------------	ZK616.1 ZK616.1 ZK616.1
celegans	.((...((...((((..(((.(((...(((......))).))).)))....))))...))...)).	0.440 -10.40

celegans

chromosome:IV:5405652:5405717:-1

Opposite_strand|Intronic_coding|ZK616.1|ZK616.1 ## ZK616.1|protein_coding|ZK616.1|ZK616.1 [Source:RefSeq_peptide;Acc:NP_500805] ## {SimpF: WRM0635cB02 -1 fosmid}

block1216 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.200	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	16	6	3arm	2	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------AUGGUGU------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------GATGGTGTAGTCCATGGCTCCG----------------	22	1
celegans	tggcgcagccactgtatggggccaagaatttgagtggagcggcatcggaggcggtggcagacacaacGATGGTGTAGTCCATGGCTCCGgcgtcagtgagacgct
	*********************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................	T26E3.7 T26E3.7 T26E3.7
celegans	.((((....(((((..((((((((..........(((((((.(((((......(((.....)))..))))).)))..))))))))))))....)))))...))))	0.480 -38.60

celegans

chromosome:I:12655878:12655982:1

Opposite_strand|Boundary_non-coding|T26E3.7|T26E3.7 ## T26E3.7|protein_coding|T26E3.7|T26E3.7 [Source:RefSeq_peptide;Acc:NP_493203] ## {SimpF: T26E3.7 1 Expression_profile,WRM0629bB02 1 fosmid,WRM069aG07 1 fosmid}

block7521 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.182	no	no	0.62/0.62	21/21/1.00	0.0	0.0	1	0	1	0	5	11	3arm	1	nd	0.43	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AGGUGGG------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------CAGGTGGGAGTGGTGGTAGTG-----	21	1
celegans	ggtgacatcaaaaaaccaagattttcaaaatttcaaaatttctaatgtgtagaagtggctCAGGTGGGAGTGGTGGTAGTGgagcc
	**************************************************************************************
celegans	(((..(((......((((..(((..((..........(((((((.....)))))))........))..)))..)))).)))..)))	0.990 -18.47

celegans

chromosome:V:18514756:18514841:1

intergenic ## {SimpF: WRM0621cH01 1 fosmid}

block1870 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	4	2	5arm	1	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----UGGACGA--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----CTGGACGAATCGATTGTGTG--------------------------------------------------	20	1
celegans	tcttCTGGACGAATCGATTGTGTGtccaataacaaaactaactgaaagaaaaacaaaagatgtgcagcacagaa
	**************************************************************************
	................................................................>>>>>>>>>>>>>>>>>>>>	R05H5.4 R05H5.4 R05H5.4
	>>>>>>>>>>>>>>>>>>>>>>>.............................................................	R05H5.5 R05H5.5 R05H5.5
celegans	(((.(((.((..(((..((((...((.....................))...))))..))))).)))...))).	0.530 -8.10

celegans

chromosome:II:10199676:10199749:-1

Same_strand|Boundary_non-coding|R05H5.5|R05H5.5 ## R05H5.5|protein_coding|R05H5.5|R05H5.5 [Source:RefSeq_peptide;Acc:NP_496202] ## {SimpF: WRM068dE11 -1 fosmid,WRM0633bD04 -1 fosmid,WRM062aC11 -1 fosmid,WRM0614dE08 -1 fosmid,WRM0626dC11 -1 fosmid,WRM068bA02 -1 fosmid,WRM0624cB12 -1 fosmid}

block8183 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.876	no	no	0.42/0.43	19/21/0.50	0.0	1.0	2	0	1	0	15	20	5arm	1	nd	0.26	1	2	1	na	na

		reads	miRBase family seed
seed	----------------AAUGAGU---------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	---------------GAATGAGTTGTTGTCCAGTAG--------------------------------------------------------------------------	21	1
	---------------GAATGAGTTGTTGTCCAGT----------------------------------------------------------------------------	19	1
celegans	ttttgatgattttagGAATGAGTTGTTGTCCAGTAGagcaattagacatcgagaacgaaatgagtagacgagtataaattggcggggggtcgtggggatcgaaccagaga
	**************************************************************************************************************
celegans	(((((.(((((((....((((.((.(((.(((((.......(((.((.(((...((.......))...))))).))))))))))).)).)))).)))))))...))))).	0.440 -17.61

celegans

chromosome:X:1982763:1982872:1

intergenic ## {SimpF: WRM067dE01 1 fosmid,WRM0615cH04 1 fosmid}

block5520 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.197	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	20	2	5arm	1	nd	0.11	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------ACAUCUU--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------TACATCTTGCATTTTAAAT---------------------------------------------------	19	1
celegans	acattttagtggtaaaacatTACATCTTGCATTTTAAATagagatttatttaaatttatgtaaaaaactgtgataatcccagaaattgta
	******************************************************************************************
	----------------------------------------------------------------------------------------------------	Y73B6BL.26 Y73B6BL.26 lgc-10
celegans	(((.(((..(((......((((((..(((((((((((((((....)))))))))...)))))).....))))))....))).))).))).	0.890 -12.60

celegans

chromosome:IV:6448112:6448201:1

Opposite_strand|Intronic_coding|Y73B6BL.26|Y73B6BL.26 ## Y73B6BL.26|protein_coding|lgc-10|Y73B6BL.26 [Source:RefSeq_peptide;Acc:NP_500985] ## {SimpF: WRM0637bC06 1 fosmid,WRM0634cA05 1 fosmid}

block4768 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	31	-2	5arm_loop	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------GGAUGAU------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------GGGATGATTGAAGTTATTT-------------------------------------------------------	19	1
celegans	gtttatatttgtgtcgaaaaatattatttatGGGATGATTGAAGTTATTTattgttgtttcaaaaaaattttatgttttaatattttttaatgtttctgatgagc
	*********************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------	Y64G10A.7 Y64G10A.7 Y64G10A.7
celegans	((((((......((..((((((((((..((((((((..((((((..((.....))..))))))....))))))))...))))))))))..)).......))))))	0.980 -17.22

celegans

chromosome:IV:14309623:14309727:-1

Opposite_strand|Intronic_coding|Y64G10A.7|Y64G10A.7 ## Y64G10A.7|protein_coding|Y64G10A.7|The Y64G10A.7 gene encodes a homolog of the human gene FIBRILLIN-1, which when mutated leads to Marfan syndrome (OMIM:154700). [Source: WormBase] ## {SimpF: WRM0610dE08 -1 fosmid}

block6458 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.070	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	15	18	3arm	25	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AAAUAUA------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------CAAATATAGTGACTCTGGCCGTT---------------	23	1
celegans	tcaccaaaattagtgactctggccgttcactaaatatagttactctggccgttcaccaagtatagtgactctggccgttcacCAAATATAGTGACTCTGGCCGTTcatcaaaattagtga
	************************************************************************************************************************
celegans	((((........((((...((((((.((((((.((...((.....((((((.((((........))))...))))))...))...)).))))))...)))))).))))........))))	0.710 -28.09

celegans

chromosome:V:5285599:5285718:-1

intergenic ## {Repeats: trf 725 748 0 class=trf,trf 2340 2363 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid}

block8439 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.67/0.67	21/21/1.00	0.0	0.0	2	0	1	0	13	10	3arm	1	nd	0.19	2	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------GACCGGG--------------------------	2	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------CGACCGGGAATAGCCTAGCGG-------------	21	2
celegans	cgcgcgaattggccgtcagtgggtttccgactcccttcgattagctgacgtgtcaacatggtgcatCGACCGGGAATAGCCTAGCGGctagggtgcgtga
	****************************************************************************************************
celegans	((((((..((((((((...((((((......((((.(((((..((...((((....))))..)))))))..))))..))))))))))))))..)))))).	0.960 -42.60

celegans

chromosome:X:9191713:9191812:1

intergenic ## {SimpF: WRM0612bC02 1 fosmid,oe = 1.07 0 CpG,WRM0610cE08 1 fosmid,WRM0620dF09 1 fosmid,WRM0622bB10 1 fosmid,WRM0637cC07 1 fosmid,WRM0628dH07 1 fosmid,WRM0624aE04 1 fosmid,WRM0624bA11 1 fosmid}

block6183 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.392	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	20	8	3arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------AAUAGCA------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------TAATAGCAGAGATAGAGT--------------------	18	1
celegans	atattcaaaattttaaagctgtttcaatattctgacaaattatttagattttattcaaatgtatTAATAGCAGAGATAGAGTaaacggacaattattgaata
	******************************************************************************************************
celegans	.(((((((((((......((((((...(((((((....((((..((.((((.....)))).)).))))..))))).))....))))))..)))).)))))))	0.640 -12.30

celegans

chromosome:IV:16374045:16374146:1

intergenic ## {SimpF: WRM062dA08 1 fosmid,WRM0621bE04 1 fosmid}

block5512 [novel_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.428	no	no	0.55/0.56	18/20/0.92	0.0	0.0	11	0	1	0	7	25	3arm	1	nd	0.35	4	12	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------ACGUGUG-------------------	12	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------TACGTGTGTCGAGGGTTGTG-------	20	11
	-------------------------------------------------------------------------------TACGTGTGTCGAGGGTTG---------	18	1
celegans	cgagaagatcagcgatacactggaaaaatttcgtctgtttcatgtttttgttataatgtttggaaacatttttagttgtTACGTGTGTCGAGGGTTGTGacttttt
	**********************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<--------------------------------------------------------------------------------------------	T13A10.12 T13A10.12 srv-32
celegans	.(((..((((..(((((((((((...((((.....(((((((((((........)))))...)))))).....)))).))).))))))))..))))....)))...	0.500 -20.30

celegans

chromosome:IV:6281546:6281651:1

Opposite_strand|Intronic_coding|T13A10.12|T13A10.12 ## T13A10.12|protein_coding|srv-32|Serpentine Receptor, class V family member (srv-32) [Source:RefSeq_peptide;Acc:NP_500955] ## {SimpF: T13A10.12 1 Expression_profile}

block1378 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.134	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	14	4	3arm	1	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UCUUAUG----------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------GTCTTATGATGTGAAGCTACTG--------------	22	1
celegans	gtccgacttgactcggctgatcatcaagacgtgtttaactgcgtGTCTTATGATGTGAAGCTACTGcatctatgtcagaa
	********************************************************************************
celegans	.((.(((.((....((((...(((((((((((((......))))))))..)))))...))))....)).....))).)).	0.530 -20.70

celegans

chromosome:I:15064629:15064708:1

intergenic ## {SimpF: WRM066aE11 1 fosmid,WRM068cA11 1 fosmid,WRM067aB07 1 fosmid,WRM0628aC12 1 fosmid,WRM0625cG10 1 fosmid,WRM0629dE08 1 fosmid,WRM0637dE09 1 fosmid,WRM0623dH11 1 fosmid,WRM0631aD12 1 fosmid,WRM0640bG08 1 fosmid,WRM0626cH01 1 fosmid,WRM0615cH09 1 fosmid}

block5989 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.379	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	9	3	5arm	1	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	----------GUGUGUC----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------TGTGTGTCAAGTAAAAGGAATG--------------------------------------------	22	1
celegans	gaatttttcTGTGTGTCAAGTAAAAGGAATGcggttttttgttgctttttcttctgtacattcccagtgtattcc
	***************************************************************************
celegans	((((....(((.((((((((.((((((...((((....))))..))))))))..)).))))...)))...)))).	0.990 -12.10

celegans

chromosome:IV:14800989:14801063:1

intergenic ## {SimpF: WRM0620bC02 1 fosmid,WRM0621bH07 1 fosmid,WRM0625cC10 1 fosmid,Y57G11C.14 1 Expression_profile}

block6340 [novel_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.170	no	no	0.43/0.50	20/24/1.00	0.0	0.0	7	0	1	0	29	-3	5arm_loop_3arm	1	nd	0.43	4	11	1	na	na

		reads	miRBase family seed
seed	------------------------------UUUGAAG---------------------------------------------------------------	7	novel
seed	---------------------------------GAAGAAG------------------------------------------------------------	2	novel
seed	--------------------------------UGAAGAA-------------------------------------------------------------	1	novel
seed	-----------------------------AUUUGAA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------ATTTGAAGAAGGTGGTAGCCTTG------------------------------------------------	23	7
	--------------------------------TGAAGAAGGTGGTAGCCTTG------------------------------------------------	20	2
	----------------------------GATTTGAAGAAGGTGGTAGCCTTG------------------------------------------------	24	1
	-------------------------------TTGAAGAAGGTGGTAGCCTTGAGG---------------------------------------------	24	1
celegans	ttctagcttagcaagtttggtcgaagaagATTTGAAGAAGGTGGTAGCCTTGaggacactttcacaaataggtttttcaatagttactttgggcctaggg
	****************************************************************************************************
celegans	.(((((((((..((((...((.((((((.(((((..(((((((....((....)).))))))).)))))...)))))).))....))))))))).)))).	0.990 -24.50

celegans

chromosome:MtDNA:12410:12509:1

intergenic

block8002 [novel_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	29	6	3arm	3	nd	0.23	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------AACCACU-------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------CAACCACTGGAATTTCTCTATT-----------------------------	22	1
celegans	tgtacgatcttcttagccatattataagtaagtgaagttcaagatggttgtaaaacattgagtactaCAACCACTGGAATTTCTCTATTgcatttttggatgggcaaagttgtagtac
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F39B1.1 F39B1.1 F39B1.1
celegans	.((((......(((.(((.((((..((((((..(((((((.((.((((((((..((.....))..)))))))))).)))))))....)))).))....))))))).))).....))))	0.930 -31.40

celegans

chromosome:X:15237061:15237178:-1

Same_strand|Intronic_coding|F39B1.1|F39B1.1 ## F39B1.1|protein_coding|F39B1.1|F39B1.1 [Source:RefSeq_peptide;Acc:NP_510529] ## {SimpF: WRM0639bH04 -1 fosmid,WRM0635aF06 -1 fosmid,WRM0621bC05 -1 fosmid,WRM068aA02 -1 fosmid,WRM0611bA02 -1 fosmid,WRM0629dB10 -1 fosmid}

block2030 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.155	no	no	0.58/0.58	26/26/0.00	0.0	0.0	1	0	1	0	22	3	3arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------GCGAGUA----------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------GGCGAGTAACGGCTTGATGTAGTCCG----------------------	26	1
celegans	aggttcgtgtaaacacttttttaaaggaccatccggatgcttcatgtttcatGGCGAGTAACGGCTTGATGTAGTCCGcaaagaagcctcctttgaacca
	****************************************************************************************************
celegans	.((((((........(((((((...((((((((.((.(((((((((...))))..)))))....)).))))..))))..))))))).......)))))).	0.540 -25.46

celegans

chromosome:II:13477771:13477870:-1

intergenic ## {SimpF: WRM0627cH01 -1 fosmid}

block2978 [novel_lenNOK_shortStem_5varHIGH_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.343	no	no	0.24/0.39	18/25/0.33	1.7	5.0	3	0	1	0	0	-4	5arm_loop	1	nd	0.19	3	3	1	na	na

		reads	miRBase family seed
seed	-AACAGAU------------------------------------------------------------------	2	novel
seed	------AUGAGUG-------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	GAACAGATGAGTGAAATG--------------------------------------------------------	18	1
	GAACAGATGAGTGAAATGATT-----------------------------------------------------	21	1
	-----GATGAGTGAAATGATTAAAAATAAG--------------------------------------------	25	1
celegans	GAACAGATGAGTGAAATGATTAAAAATAAGaactgatgaaattgaacctttttgaatatttcgttttgatgttt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ZC395.8 ZC395.8 ztf-8
celegans	(((((...((((((((((.(((((((......................))))))).))))))))))...)))))	1.000 -9.85

celegans

chromosome:III:5270032:5270105:-1

Same_strand|Intronic_coding|ZC395.8|ZC395.8 ## ZC395.8|protein_coding|ztf-8|Zinc finger Transcription Factor family member (ztf-8) [Source:RefSeq_peptide;Acc:NP_498124] ## {SimpF: ZC395.8 -1 Expression_profile,yk354c1 -1 RNAi,WRM0625aB02 -1 fosmid,CEOP3276 1 Operon,WRM0623cG12 -1 fosmid,WRM0636cF02 -1 fosmid}

block3798 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.832	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	8	13	3arm	1	nd	0.19	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------ACUGUGA---------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------CACTGTGAGCAAGAGAAGAGC--------	21	1
celegans	gtaagttgtttcctaattatttatttgttcagaaaaagagccgttattgaattatgtcgtcgtcgactgaaagtgaCACTGTGAGCAAGAGAAGAGCcatttata
	*********************************************************************************************************
celegans	((((((.((((........(((.((((((((.....((....((((((...(((.((((....))))))).)))))).)).)))))))).))))))).)))))).	0.520 -16.60

celegans

chromosome:III:9509686:9509790:1

intergenic ## {SimpF: WRM0611cG01 1 fosmid,WRM0616bE10 1 fosmid,WRM0618aH06 1 fosmid}

block4205 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.061	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	0	5	3arm	1	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------AAGUUGU----------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------TAAGTTGTCCAAAGGTTT	18	1
celegans	gacttgaaggtacaagtttccgtaaaaaatatgaTAAGTTGTCCAAAGGTTT
	****************************************************
celegans	(((((...((.((((.((..((((.....))))..)).))))))..))))).	1.000 -10.10

celegans

chromosome:IV:5203293:5203344:-1

intergenic ## {SimpF: WRM0623dD08 -1 fosmid,WRM0616bF04 -1 fosmid,WRM0632cH10 -1 fosmid,WRM062bD12 -1 fosmid,WRM067dF01 -1 fosmid,WRM069cD11 -1 fosmid}

block6256 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.181	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	13	8	3arm	2	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UUGCAGU---------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------ATTGCAGTGTGCTGACCATTGA-------------	22	1
celegans	gagcaggagcagatgtttcatatgtgcatcgtgatgaccaggagcatccagcagcagcttcatcATTGCAGTGTGCTGACCATTGAgctcagcagcttc
	***************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y116A8C.3 Y116A8C.3 Y116A8C.3
celegans	((((..((((.((((..(((...((((((.(((((((...(((((...........))))).))))))).))))))))).))))..))))....)))).	0.420 -28.90

celegans

chromosome:IV:16917825:16917923:1

Same_strand|Intronic_coding|Y116A8C.3|Y116A8C.3 ## Y116A8C.3|protein_coding|Y116A8C.3|Y116A8C.3 [Source:RefSeq_peptide;Acc:NP_503003] ## {SimpF: WRM0621dF01 1 fosmid}

block52 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.293	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	8	6	3arm	3	nd	0.22	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------UAUUUUU------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------GTATTTTTTTCTGAATTT--------	18	1
celegans	gaaaaactgtgaatttttaaaaaatgtttgaaggcaaacgaaacttccaGTATTTTTTTCTGAATTTttatttct
	***************************************************************************
celegans	((((......((((((..((((((((((.((((..........)))).))))))))))...))))))...)))).	0.830 -10.10

celegans

chromosome:I:936906:936980:-1

intergenic ## {Repeats: dust 37058 37074 0 class=dust} ## {SimpF: WRM0633cD07 -1 fosmid,WRM0614aH12 1 fosmid,WRM0631cC01 -1 fosmid,WRM0623aG10 -1 fosmid,WRM0629bB12 1 fosmid,WRM067aA07 -1 fosmid}

block3286 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.896	no	no	0.33/0.33	24/24/1.00	0.0	0.0	1	0	1	0	12	10	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------------CCAAUUU------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------GCCAATTTGAGGAATGAATTTTGT--------------------------------------------------------------------	24	1
celegans	gttatgaataacGCCAATTTGAGGAATGAATTTTGTgaaatgttgagaataaattaaaattgaaaaaaaaaacgatctttctagactttggaatttttaaaaca
	********************************************************************************************************
	<<<...............................................................................................................	Y66D12A.11 Y66D12A.11 Y66D12A.11
celegans	(((.((((.....((((....(((((.((...((((..(((.((((.......)))).)))..........))))))))))).....))))....)))).))).	0.680 -9.30

celegans

chromosome:III:11563305:11563408:-1

intergenic

block4708 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.159	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	19	15	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------UCAGAUG------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------TTCAGATGTTAGATAGGTG-------------------	19	1
celegans	aattaaatttgaatttaatacgttttttctgtttcaataatgcgataatataaaataattatgttctccatagTTCAGATGTTAGATAGGTGaataatttaaattaaattg
	***************************************************************************************************************
celegans	((((.((((((((((...(((...(((..(((((.(((.(((.((.(((((((.....))))))).))))).))).)))))..)))...)))...)))))))))).)))).	0.990 -15.80

celegans

chromosome:IV:13764296:13764406:-1

intergenic ## {SimpF: WRM0623aE09 -1 fosmid,WRM0618dC07 -1 fosmid,WRM0628aF05 -1 fosmid}

block6456 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.202	no	no	0.43/0.43	23/23/1.00	0.0	0.0	2	0	1	0	10	3	5arm	25	nd	0.30	3	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------AAAUAUA-------------------------------------------	1	novel
seed	-----------AAAUAUA---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------CAAATATAGTGACTCTGGCCGTT------------------------------------------------------	23	1
	------------------------------------CAAATATAGTGACTCTGGCCGTT----------------------------	23	1
celegans	gaccgttcacCAAATATAGTGACTCTGGCCGTTcacCAAATATAGTGACTCTGGCCGTTcaccaaatatagtgactctgaccgttca
	***************************************************************************************
celegans	((.((.(((.....((((((((...((((((.((((........))))...)))))).))))....)))).......))).)).)).	0.640 -17.80

celegans

chromosome:V:5285352:5285438:-1

intergenic ## {Repeats: trf 2132 2155 0 class=trf,trf 517 540 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid}

block6054 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	2	25	5arm	1	nd	0.43	3	1	1	na	na

		reads	miRBase family seed
seed	---AUUGUGA------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--CATTGTGATGAATGAAGTAGT-----------------------------------------------------------------------------	21	1
celegans	tcCATTGTGATGAATGAAGTAGTacttgattagaataaagaagttgctcgaaaagaatttttgtaaagttctgataatttttactgtttctaaacgttgg
	****************************************************************************************************
	>>............................................................................................................	Y73F8A.15 Y73F8A.15 Y73F8A.15
celegans	.(((.(((...(((...(((((......((((((((..(((((((.((.....))))))))).....)))))))).....)))))..)))...))).)))	0.980 -18.60

celegans

chromosome:IV:15322145:15322244:1

intergenic ## {SimpF: Y73F8A.N 1 Expression_profile}

block2784 [novel_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.254	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	3	6	3arm	25	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------AAAUAUA------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------CAAATATAGTGACTCTGGCCGTT---	23	1
celegans	gtgactctggccgttcaccataagaagtgactctggccgttcacCAAATATAGTGACTCTGGCCGTTcac
	**********************************************************************
celegans	((((...((((((.((((.(((....(((((.......)).)))....))).))))...)))))).))))	0.590 -16.90

celegans

chromosome:III:931119:931188:-1

intergenic ## {Repeats: trf 25 48 0 class=trf} ## {SimpF: WRM0637dB11 1 fosmid,WRM0640cE06 -1 fosmid,WRM0636bH03 1 fosmid,WRM065aC03 -1 fosmid}

block905 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.039	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	6	-4	5arm_loop	1	nd	0.28	5	1	1	na	na

		reads	miRBase family seed
seed	-------UUUCUUG--------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GTTTCTTGTTGACTGACGTCATCTT---------------------------------------	25	1
celegans	catttcGTTTCTTGTTGACTGACGTCATCTTctgctcactgatgtcaaattcaaaaagacagacggttga
	**********************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...............................................	T27A3.5 T27A3.5 T27A3.5
celegans	((..(((((((((.((((.((((((((............))))))))...)))).))))..))))).)).	1.000 -16.70

celegans

chromosome:I:6101656:6101725:1

Opposite_strand|Boundary_non-coding|T27A3.5|T27A3.5 ## T27A3.5|protein_coding|T27A3.5|T27A3.5 [Source:RefSeq_peptide;Acc:NP_491761] ## {SimpF: WRM0632dE08 1 fosmid,WRM0617cA08 1 fosmid,WRM0640cD10 1 fosmid,WRM0623cH06 1 fosmid}

block6760 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	13	5	3arm	1	nd	0.21	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUUGUUU------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------ATTTGTTTACAAGGAATAG-------------	19	1
celegans	tatgaaaagacttttattctcattttaagatgaacaattttctcaaaaaaatgtttgaATTTGTTTACAAGGAATAGaaagtcgaacata
	******************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...........................................................	M04G12.4b.2 M04G12.4 somi-1
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...........................................................	M04G12.4b.1 M04G12.4 somi-1
celegans	((((....((((((((((((..........(((((((.....(((((......)))))..)))))))...))))))))).)))...))))	0.420 -13.92

celegans

chromosome:V:13386001:13386090:-1

intergenic ## {SimpF: WRM0638aE07 -1 fosmid,WRM064cH02 -1 fosmid,WRM0635dF12 -1 fosmid,WRM068dF01 -1 fosmid,WRM0632aC10 -1 fosmid,WRM0627aB06 -1 fosmid,WRM0631bA06 -1 fosmid,WRM0636bA06 -1 fosmid,WRM0635dB07 -1 fosmid,WRM0637cC04 -1 fosmid,WRM066bH03 -1 fosmid}

block481 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.354	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	19	0	5arm	2	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------AUUUUUA------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------GATTTTTAGACCAAAAATT-------------------------------------------------	19	1
celegans	ggaatgtgtttttttttttGATTTTTAGACCAAAAATTccaaaaaaaatttaaattttttaaaatcaaataaagtaaaagcttttca
	***************************************************************************************
	-------------------------------------------------------------------------------------------------	T22A3.8 T22A3.8 lam-3
celegans	.(((...((((((...(((((((((.(((....(((((........))))).....))).)))))))))......))))))..))).	0.900 -9.60

celegans

chromosome:I:10620522:10620608:-1

Opposite_strand|Intronic_coding|T22A3.8|T22A3.8 ## T22A3.8|protein_coding|lam-3|lam-3 is orthologous to human LAMININ ALPHA-2 (LAMA2. OMIM:156225), which when mutated leads to merosin-deficient congenital muscular dystrophy. [Source: WormBase] ## {Repeats: dust 47275 47282 0 class=dust,dust 47263 47269 0 class=dust} ## {SimpF: WRM0638bF09 -1 fosmid,WRM0634cH02 -1 fosmid,C43H8.3 -1 Expression_profile,WRM0640dB10 -1 fosmid,WRM0618aD12 -1 fosmid,WRM0619aD09 -1 fosmid,WRM068bC05 -1 fosmid}

block2122 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.072	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	0	1	3arm	2	nd	0.24	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------GAUCUUC--------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------GGATCTTCAGAGAGCATGAGCC	22	1
celegans	ggccacaaataattcatggaggttcatctttattGGATCTTCAGAGAGCATGAGCC
	********************************************************
	.............................................<<<<<<<<<<<<<<<<<<<<<	F46F5.9 F46F5.9 F46F5.9
celegans	(((((.......(((.((((((((((.......)))))))))))))....)).)))	0.980 -14.10

celegans

chromosome:II:822482:822537:1

Opposite_strand|Boundary_non-coding|F46F5.9|F46F5.9 ## F46F5.9|protein_coding|F46F5.9|F46F5.9 [Source:RefSeq_peptide;Acc:NP_493822] ## {SimpF: WRM0622dC12 1 fosmid,WRM0626dE09 1 fosmid,WRM0627cG11 1 fosmid,F46F5.9 1 Expression_profile,WRM0638dH08 1 fosmid,WRM067dE12 1 fosmid,WRM0626dF08 1 fosmid,WRM0618cG04 1 fosmid,WRM063cA07 1 fosmid,WRM069bC02 1 fosmid}

block2376 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	17	3	5arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------------------GAUAUGU------------------------------------------------------------------------------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	-----------------TGATATGTTGTTGATGCC--------------------------------------------------------------------------	18	1
celegans	gtgaaatacgatgctgaTGATATGTTGTTGATGCCgtaattattatcaaaatacttctaatctctatcaataccaacatccacaacatatcacaccatctatatccaca
	*************************************************************************************************************
celegans	(((..(((.((((.((.(((((((((((.((((..(((................................)))...)))).))))))))))))).)))))))...))).	0.860 -24.45

celegans

chromosome:II:7471155:7471263:1

intergenic ## {SimpF: WRM0636aC11 1 fosmid,WRM0629bF07 1 fosmid,WRM0635bG06 1 fosmid,WRM0621dE08 1 fosmid,WRM0611cE04 1 fosmid,WRM0636cB07 1 fosmid}

block3497 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.128	no	no	0.31/0.33	21/26/0.33	0.0	1.7	3	0	1	0	10	7	5arm	1	nd	0.14	1	3	1	na	na

		reads	miRBase family seed
seed	-----------UCAAUGC------------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	----------GTCAATGCCATTTTCTGATTATAAGT------------------------------------------------------------	26	2
	----------GTCAATGCCATTTTCTGATTA-----------------------------------------------------------------	21	1
celegans	aaaaaccctaGTCAATGCCATTTTCTGATTATAAGTtacaatagagacatatttgcatttaaattattgaagatcgcttgacttattcttgttttt
	************************************************************************************************
	.......................................................................................<<<<<<<<<<<<<<<<<<<	R13G10.4 R13G10.4 R13G10.4
celegans	((((((...((((((.((.(((((((((((.(((((...((((......))))...))))))))))..)))))).)))))))).......))))))	0.970 -15.30

celegans

chromosome:III:3826275:3826370:1

intergenic ## {SimpF: WRM065cE05 1 fosmid,WRM0624bD07 1 fosmid,WRM0640dH02 1 fosmid,WRM063dB07 1 fosmid,WRM0626aB12 1 fosmid,WRM062aH09 1 fosmid,WRM0634bH05 1 fosmid,WRM0613aC06 1 fosmid}

block7375 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.160	no	no	0.36/0.36	22/22/1.00	0.0	0.0	2	0	1	0	17	-1	5arm_loop	1	nd	0.36	3	2	1	na	na

		reads	miRBase family seed
seed	------------------CAUGAGG------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-----------------TCATGAGGAACCAACTGAAATT----------------------------------------------------	22	2
celegans	tccgtcgcggctggtttTCATGAGGAACCAACTGAAATTaattttatttattttaaggttaagtgtggaaatttggcttggcttaccggaa
	*******************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------<<<<<<<<<<	C15H11.4 C15H11.4 dhs-22
celegans	((((..((((((((((((((((...((((...((((((...........)))))).))))...)))))))))).))))..))....)))).	0.670 -19.90

celegans

chromosome:V:14420343:14420433:1

Opposite_strand|Boundary_coding|C15H11.4|C15H11.4 ## C15H11.4|protein_coding|dhs-22|dhs-22 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase] ## {SimpF: WRM0614dC12 1 fosmid,WRM0615aB07 1 fosmid,WRM0630cB06 1 fosmid,CEOP5416 -1 Operon,WRM0612dC05 1 fosmid,WRM0617aH02 1 fosmid,yk176b4 1 RNAi,WRM0623cD09 1 fosmid,WRM0617cF09 1 fosmid}

block3096 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.013	no	no	0.57/0.57	21/21/1.00	0.0	0.0	2	0	1	0	32	-3	5arm_loop	4	nd	0.38	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------UGGUCAA----------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------GTGGTCAATGTCGAAGAGGCG---------------------------------------------------------	21	2
celegans	aatggaaggatgaggtggtttagcggacgcttGTGGTCAATGTCGAAGAGGCGacgactctgcacgactctgaaaacataaattgttatgaataacttcatttttgagtt
	**************************************************************************************************************
celegans	(((..(((((((((((.(((((...((((.(((((.(((..((((.((((.......))))...))))..)))...)))))..)))).))))).)))))))))))..)))	0.990 -32.20

celegans

chromosome:III:7715547:7715656:-1

intergenic ## {SimpF: WRM064cF06 -1 fosmid,WRM0632bB09 -1 fosmid,WRM0628dG03 -1 fosmid,WRM0619bD10 -1 fosmid,WRM0625bC10 -1 fosmid,WRM0628bG07 -1 fosmid,WRM064aA06 -1 fosmid,C03B8.2 -1 Expression_profile,WRM0611aC10 -1 fosmid,WRM0621bE11 -1 fosmid}

block6604 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.568	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	1	26	3arm	3	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------UUAGCGU--------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------GTTAGCGTTAAGCCATGCCAG-	21	1
celegans	gactggatgtacaatgtgtccaaagtccgtgatttctaccaacctcccagacggaagaatatgtttcttggtctctggGTTAGCGTTAAGCCATGCCAGt
	****************************************************************************************************
celegans	.((((((((...(((((.((((.((.(((.((.((((.((............)).))))......)).))).)).))))...)))))....))).)))))	0.510 -22.90

celegans

chromosome:V:8882832:8882931:-1

intergenic ## {SimpF: WRM0627bB06 -1 fosmid,WRM0611cD09 -1 fosmid,WRM0638aA04 -1 fosmid,WRM0625aH11 -1 fosmid,WRM0632cD08 -1 fosmid,WRM0614bC01 -1 fosmid,WRM0620dF01 -1 fosmid,WRM0632aF08 -1 fosmid,WRM0636aD03 -1 fosmid,WRM0630cG07 -1 fosmid,WRM0627cF05 -1 fosmid,WRM0628dF12 -1 fosmid,WRM0615bD11 -1 fosmid,WRM064dE05 -1 fosmid,WRM063bH07 -1 fosmid,WRM068aG12 -1 fosmid,WRM0614aB05 -1 fosmid}

block3549 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.26/0.26	23/23/1.00	0.0	0.0	1	0	1	0	7	25	5arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	--------AAUUGAA-----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------GAATTGAAATCAGTCATCTTTTT--------------------------------------------------------------------------------	23	1
celegans	ttcattcGAATTGAAATCAGTCATCTTTTTatgattttccgtcctcgtttcaatggaatcacacaaatgacgggcggactgaagaagatcaccaaatttgatgatatgaa
	**************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	M88.7 M88.7 M88.7
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........................................................................................	M88.3 M88.3 M88.3
celegans	.((((....((..((....((.((((((((.......(((((((((((((...((......)).)))))).)))))))...)))))))).))....))..))...)))).	0.400 -26.40

celegans

chromosome:III:4544918:4545027:1

Opposite_strand|Boundary_non-coding|M88.3|M88.3 ## Same_strand|Intronic_coding|M88.7|M88.7 ## M88.7|protein_coding|M88.7|M88.7 [Source:RefSeq_peptide;Acc:NP_497920] ## M88.3|protein_coding|M88.3|M88.3 [Source:RefSeq_peptide;Acc:NP_497921] ## {SimpF: WRM0611dC02 1 fosmid,WRM0618aF05 1 fosmid,WRM061bH07 1 fosmid,WRM0622dB10 1 fosmid,WRM0640cE01 1 fosmid,M88.3 1 Expression_profile,WRM0631cD12 1 fosmid,WRM0625cB01 1 fosmid,WRM0624dG04 1 fosmid,WRM0626cG09 1 fosmid,WRM0627cC04 1 fosmid}

block6573 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.255	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	1	32	5arm	1	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	--AAUAUGA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-CAATATGATGTTATCCAAAGT-----------------------------------------------------------------------------------	21	1
celegans	aCAATATGATGTTATCCAAAGTtcttcgaaattctccacttcttttccgtgtcgcacaaccgaaggatcatgaacgaattattaagtttctggataaacattttg
	*********************************************************************************************************
	..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	W02D7.4 W02D7.4 W02D7.4
celegans	.(((.(((...(((((((.....(((...(((((.....(((...(((...(((......))).)))....))).)))))...)))....))))))).))).)))	0.750 -17.20

celegans

chromosome:V:8297402:8297506:-1

Same_strand|Boundary_non-coding|W02D7.4|W02D7.4 ## W02D7.4|protein_coding|W02D7.4|W02D7.4 [Source:RefSeq_peptide;Acc:NP_505142] ## {SimpF: WRM0630bG12 -1 fosmid,WRM068cD11 -1 fosmid,WRM0619bF11 -1 fosmid,WRM0627aB01 -1 fosmid,WRM0641cD02 -1 fosmid,WRM0610aB08 -1 fosmid,WRM0641aD03 -1 fosmid,WRM0629aF03 -1 fosmid,WRM063cD01 -1 fosmid,WRM0641aC12 -1 fosmid,W02D7.4 -1 Expression_profile,WRM0623dE08 -1 fosmid}

block5761 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.545	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	6	6	5arm	6	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	-------UUUGCUU--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GTTTGCTTGGTACGAGCCATTG------------------------------------------------	22	1
celegans	cgggcgGTTTGCTTGGTACGAGCCATTGcgtttaggttgataatccgtggggactgtaaaaaagagaaaccaacga
	****************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.......................................................	F54E12.1 F54E12.1 his-55
celegans	((...(((((.(((..((((..((.(((((.(((......)))..)))))))..))))...)))..)))))..)).	0.820 -15.90

celegans

chromosome:IV:11338209:11338284:1

Opposite_strand|Boundary_non-coding|F54E12.1|F54E12.1 ## F54E12.1|protein_coding|his-55|his-55 encodes an H3 histone. by homology, HIS-55 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. his-55 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. [Source: WormBase] ## {SimpF: WRM0628dB08 1 fosmid,WRM066bE05 1 fosmid,oe = 1.05 0 CpG,WRM0613dE12 1 fosmid,WRM0626dC01 1 fosmid,F54E12.1 1 Expression_profile,WRM068dF12 1 fosmid,WRM0610aC05 1 fosmid}

block5107 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.399	no	no	0.24/0.24	21/21/1.00	0.0	0.0	2	0	1	0	15	9	5arm	1	nd	0.24	3	2	1	na	na

		reads	miRBase family seed
seed	----------------CAGCUGA--------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	---------------TCAGCTGATTTTTAAAATTTG-------------------------------------------------------------	21	2
celegans	ggaatttttgtatatTCAGCTGATTTTTAAAATTTGaaaattttgttaacaatttctttttaaaaactaaagccaaaataaatgggtaaaatgttcc
	*************************************************************************************************
celegans	(((((.(((...(((((((((..(((((((((...((((...(((....))))))).)))))))))....))).........))))))))).)))))	0.910 -12.50

celegans

chromosome:IV:16479421:16479517:-1

intergenic ## {SimpF: WRM0621bE04 -1 fosmid}

block2149 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.158	no	no	0.36/0.36	25/25/0.00	0.0	0.0	1	0	1	0	13	1	3arm	1	nd	0.24	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UUAACUU------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------GTTAACTTGACTCAGGACTCTTTAT-------------	25	1
celegans	ccattgcacaatcatataaagaatttcaatcaagtttattcatcacagcaaaGTTAACTTGACTCAGGACTCTTTATatttaatattggg
	******************************************************************************************
celegans	(((..........(((((((((.(((...(((((((.(((...........))).)))))))....))).))))))))).......))).	0.990 -12.93

celegans

chromosome:II:2072204:2072293:1

intergenic ## {SimpF: WRM0636bH12 1 fosmid,WRM0632aG11 1 fosmid,WRM0630cF07 1 fosmid}

block4938 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.294	no	no	0.42/0.42	19/19/0.00	0.0	0.0	2	0	1	0	22	13	3arm	1	nd	0.26	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------GAACGAG---------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------TGAACGAGAATCAGTAAGG----------------------	19	2
celegans	gttttgcgggaatgctttcaaatacctgatctgattcaaaatgctcttataaagtttgataggtcagttattgtaaTGAACGAGAATCAGTAAGGaatcggtaagtaatttggaaaa
	*********************************************************************************************************************
celegans	.((((.((((..(((((.......(((...(((((((....((.((((((((...((((....))))...)))))).)).)).)))))))..))).......))))).)))).))))	0.560 -20.64

celegans

chromosome:IV:15488815:15488931:-1

intergenic

block5942 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.221	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	8	0	5arm	1	nd	0.43	3	1	1	na	na

		reads	miRBase family seed
seed	---------UGGUUGU--------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------TTGGTTGTCAGAGCTATTGCT-------------------------------------------	21	1
celegans	gagggtacTTGGTTGTCAGAGCTATTGCTttttttttgtttttggtggtttttttgggaaatatggattttt
	************************************************************************
celegans	((((((.((...((.((((((..((..((..............))..))..)))))).))....))))))))	0.920 -9.34

celegans

chromosome:IV:14512581:14512652:1

intergenic ## {Repeats: dust 9221 9221 0 class=dust} ## {SimpF: WRM0613aE08 1 fosmid,Y57G11A.5 1 Expression_profile}

block2476 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.154	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	16	4	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------AGAAAAA---------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------GAGAAAAACCAAAAGAAAC----------------	19	1
celegans	aacacgatcttctttacttctttgcaaattttcaaccatttccatcccatttttctcaaacatgaaacgcggtGAGAAAAACCAAAAGAAACacggagataaatgttt
	************************************************************************************************************
celegans	((((..((((((.....((((((..........................(((((((((....((.....)).)))))))))...))))))....))))))...)))).	0.500 -14.45

celegans

chromosome:II:8686515:8686622:1

intergenic ## {SimpF: WRM062aH05 1 fosmid,WRM0629cC02 1 fosmid,WRM0610bD12 1 fosmid,WRM0611bE04 1 fosmid,WRM0639bA06 1 fosmid,WRM0623bA02 1 fosmid}

block6053 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.243	no	no	0.43/0.43	21/21/1.00	0.0	0.0	3	0	1	0	4	7	5arm	1	nd	0.29	2	3	1	na	na

		reads	miRBase family seed
seed	-----UCGAGUA----------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	----TTCGAGTAACCATTGGATACG---------------------------------------------------	21	3
celegans	atgaTTCGAGTAACCATTGGATACGtattcaattttaatgttttttgaactgtaaaacaatgtatgagttgattca
	****************************************************************************
celegans	.(((.((((.((..(((((..((((..(((((............))))).))))...)))))..))..)))).)))	0.880 -11.30

celegans

chromosome:IV:15319627:15319702:1

intergenic

block758 [novel_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	14	-4	3arm_loop	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------AAUUGCC---------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------AAATTGCCAGGCAACAACAAC--------------	21	1
celegans	ttctctcggggtattgttgatgcaagaaaacaacaccaagagaaacaaaacaatggtacAAATTGCCAGGCAACAACAACatttttgggggaaa
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	Y54E10A.9a Y54E10A.9 vbh-1
celegans	(((((((((((..((((((.(((..............................(((((.....))))).))).))))))...))))))))))).	0.980 -21.58

celegans

chromosome:I:3159349:3159442:1

Opposite_strand|Boundary_non-coding|Y54E10A.9c|Y54E10A.9 ## Opposite_strand|Intronic_non-coding|Y54E10A.9a|Y54E10A.9 ## Y54E10A.9|protein_coding|vbh-1|Vasa- and Belle-like Helicase family member (vbh-1) [Source:RefSeq_peptide;Acc:NP_491113] ## {SimpF: yk303d4 1 RNAi,yk321c5 1 RNAi}

block973 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	21	5	3arm	1	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------UAACUUG------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------GTAACTTGACGGAAAGGCGTTGT---------------------	23	1
celegans	gttagctccattttccgatttgattccattgcttttacctgaaagttagcagtataaaaagtactGTAACTTGACGGAAAGGCGTTGTtggacgcggatgagtcatacg
	*************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................................................	T28F4.1.2 T28F4.1 T28F4.1
celegans	((..((((.....((((.......((((.(((((((.((...(((((.(((((((.....))))))))))))...)))))))))....))))..)))).))))...)).	0.990 -31.40

celegans

chromosome:I:7476905:7477013:1

intergenic ## {SimpF: WRM0641dH09 1 fosmid,WRM0640aB04 1 fosmid,WRM0613aC12 1 fosmid,WRM0625bA02 1 fosmid,WRM0630dC02 1 fosmid,WRM0614cC12 1 fosmid,WRM0625bA07 1 fosmid,WRM063dH07 1 fosmid,WRM0625dC06 1 fosmid,WRM066aH03 1 fosmid}

block4108 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.359	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	12	-1	5arm_loop	1	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	-------------AUUUAUC------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------GATTTATCTTGGAGCATTTG------------------------------------	20	1
celegans	agcttaccgaaaGATTTATCTTGGAGCATTTGagcgaagggatggtctacagtaaagttgaggggtgc
	********************************************************************
celegans	.((...((..((..(((((..((((.(((((........))))).))))..))))).))..))...))	0.940 -14.00

celegans

chromosome:IV:3897141:3897208:-1

intergenic ## {SimpF: WRM0641bD04 -1 fosmid,WRM0634bC03 -1 fosmid,WRM0628dD05 -1 fosmid,WRM068aF02 -1 fosmid}

block4799 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.256	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	1	9	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------UAGAAUC------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------TTAGAATCTAGAGTTGAGC-	19	1
celegans	gtttcacctacaaatctaatttatgaagttctcagaattccgaTTAGAATCTAGAGTTGAGCa
	***************************************************************
celegans	((((.(((((....(((((((...((.((((...)))))).)))))))...))).)).)))).	1.000 -9.30

celegans

chromosome:IV:14535835:14535897:-1

intergenic ## {SimpF: WRM0616dD10 -1 fosmid,WRM0616aA10 -1 fosmid,WRM0638cE12 -1 fosmid,WRM0613aE08 -1 fosmid}

block4787 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.261	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	22	13	5arm	1	nd	0.16	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------AGGCAAG----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------TAGGCAAGAGCGGGTGAAG-----------------------------------------------------------------------------	19	1
celegans	tttcacaattgaaataatgcatTAGGCAAGAGCGGGTGAAGaaaaattggtattaaatatttatctgaaatgaagattatttttacttgtttacctagttttaacattttgcagtgaa
	**********************************************************************************************************************
celegans	.(((((...((((((.....((((((...(((((((((((((..((((..((((..............))))..)))).))))))))))))).))))))......))))))..)))))	0.430 -20.24

celegans

chromosome:IV:14435267:14435384:-1

intergenic ## {SimpF: WRM0622dH07 -1 fosmid,WRM0610aG11 -1 fosmid}

block1844 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.192	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	20	0	5arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------GAGGAGA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------GGAGGAGAGTGAAGATTAAC--------------------------------------------------------	20	1
celegans	ggatatgggggggggggggtGGAGGAGAGTGAAGATTAACaaataaattatcagttaattattacacaagccagaaaacttataacaatcatattt
	************************************************************************************************
celegans	.(((((((........((((...((...((((.(((((((.............))))))).)))).....)).....)))).......))))))).	1.000 -13.98

celegans

chromosome:II:9100456:9100551:-1

intergenic ## {SimpF: WRM0640dG09 -1 fosmid,WRM0631bE12 -1 fosmid,WRM0630aC03 -1 fosmid,WRM0637bB02 -1 fosmid}

block2514 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.210	no	no	0.48/0.48	21/21/1.00	0.0	0.0	4	0	1	0	16	21	5arm	1	nd	0.29	4	4	1	na	na

		reads	miRBase family seed
seed	-----------------UUCGCCA---------------------------------------------------------------------------------------------	4	novel
		len	cloning frequencies
			CE1
	----------------GTTCGCCATAAGCATTCGCTT--------------------------------------------------------------------------------	21	4
celegans	tactgtagcggaaagtGTTCGCCATAAGCATTCGCTTaataattcgatttctaatcgaaccattcgatcgaaaattataaaatgttatatggaaatgattcatttttgtgttgaagt
	*********************************************************************************************************************
celegans	.(((.((((((((((((.((.(((((((((((....((((..(((((.......((((.....))))))))).))))...)))))).)))))....))..))))))).))))).)))	0.660 -22.41

celegans

chromosome:II:9611291:9611407:1

intergenic ## {SimpF: WRM066cG05 1 fosmid,WRM0637dB07 1 fosmid}

block4330 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.688	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	14	22	3arm	1	65	0.16	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------UUUGUUG-------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------TTTTGTTGACGTACGTGGT--------------	19	1
celegans	tggaatggagttattaaggtattcaagaaaatattttaccgtttcagcttttggtaaaaatagtggcaattttattcggtgaTTTTGTTGACGTACGTGGTaaaatacaagttct
	*******************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	C01B10.10 C01B10.10 C01B10.10
celegans	.(((((....((((((..((((((((.((((....((((((.....(((.(((.......))).))).........)))))))))).)))).)))).)))))).......)))))	0.640 -18.74

celegans

chromosome:IV:6626509:6626623:-1

Same_strand|Intronic_coding|C01B10.10|C01B10.10 ## C01B10.10|protein_coding|C01B10.10|C01B10.10 [Source:RefSeq_peptide;Acc:NP_501021] ## {SimpF: WRM0637dD06 -1 fosmid,WRM0626aD05 -1 fosmid,C01B10.10 -1 Expression_profile,WRM0640dC01 -1 fosmid}

block2097 [novel_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	10	26	3arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------UUUUUGA---------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------------ATTTTTGAGAATTTTCGCT----------	19	1
celegans	attcagttttttttccaaaattttgagaatttttgcaaaaatctgggagttttaatcaaaaagttgaaattttttctatttttccaaaATTTTTGAGAATTTTCGCTaaaatctgaa
	*********************************************************************************************************************
celegans	.(((((.((((.....((((((((.((((.(((((.((((((..((((((((((((......))))))))))))...)))))).))))).)))).))))))))....)))).)))))	1.000 -24.90

celegans

chromosome:II:15109532:15109648:-1

intergenic ## {Repeats: dust 54843 54862 0 class=dust}

block161 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.040	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	12	-3	3arm_loop	2	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------CUGAUAG--------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------ACTGATAGTGAGTGATGGATCT------------	22	1
celegans	tcggtggagcaccatgatccggccagttagtccACTGATAGTGAGTGATGGATCTtgttttaccggc
	*******************************************************************
celegans	(((((((((((....((((((..((.((((((....)))..))).)).)))))).))))))))))).	0.980 -23.30

celegans

chromosome:I:3970304:3970370:-1

intergenic ## {SimpF: WRM0624cA09 -1 fosmid,WRM0610cH11 -1 fosmid,WRM069aC02 -1 fosmid,WRM0629bF09 -1 fosmid,WRM0641bF06 -1 fosmid}

block4923 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.637	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	13	-1	3arm	1	nd	0.14	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------AUUUACU--------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------TATTTACTCACTGGAAAATTG-------------	21	1
celegans	ttcaagttgttgatatattttcatatagtttgagtacaatttgaTATTTACTCACTGGAAAATTGactcataaagaac
	******************************************************************************
celegans	(((...(((.(((...((((((...((((..(((((.(((.....))))))))))))))))))....)))))).))).	0.420 -8.40

celegans

chromosome:IV:15326213:15326290:-1

intergenic

block5882 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.723	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	9	12	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------GAUGAUA----------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------TGATGATAGCATTAAAATTGG---------	21	1
celegans	tgatttaaatattgatttactgttacgcactttctattaaaaatttggttttcgagcacaatttagTGATGATAGCATTAAAATTGGtaaaaatta
	************************************************************************************************
	----------------------------------------------------------------------------------------------------------	Y37A1B.17a Y37A1B.17 Y37A1B.17
	----------------------------------------------------------------------------------------------------------	Y37A1B.17b Y37A1B.17 Y37A1B.17
celegans	.........(((..((((..(((((((((((.............((((((....))).)))...)))).)).)))))...))))..))).......	0.930 -11.29

celegans

chromosome:IV:13978477:13978572:1

Opposite_strand|Intronic_coding|Y37A1B.17a|Y37A1B.17 ## Y37A1B.17|protein_coding|Y37A1B.17|Y37A1B.17a [Source:RefSeq_peptide;Acc:NP_001076722] ## {SimpF: WRM062bH10 1 fosmid,WRM067aD04 1 fosmid,WRM0615cE09 1 fosmid}

block4662 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.361	no	no	0.50/0.50	20/20/1.00	0.0	0.0	2	0	1	0	14	15	5arm	2	nd	0.35	2	2	1	na	na

		reads	miRBase family seed
seed	---------------UUCAAUC------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------TTTCAATCGTTGGCAGTGGC------------------------------------------------------------------	20	2
celegans	ttgacaaaatttagTTTCAATCGTTGGCAGTGGCattggctggtggtgttcgagcagcatggcggacaaattgctgttggcggatgtcgggtggcggtca
	****************************************************************************************************
celegans	.((((...((((.....((.((((..(((((((..((.(((.(((.(((....))).)))))).))....)))))))..)))).))..))))....))))	0.440 -26.40

celegans

chromosome:IV:12677131:12677230:-1

intergenic

block7012 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.208	no	no	0.40/0.45	22/25/0.67	0.0	1.0	3	0	1	0	9	6	3arm	1	nd	0.28	3	3	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------UUGCAGA--------------------------	3	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------------------GTTGCAGATAACTGGTACAAGG------------	22	2
	---------------------------------------------------------------GTTGCAGATAACTGGTACAAGGATT---------	25	1
celegans	tcaaattaaaacttgagtagatatcgtgtatgaggtttcacaacccttccatctttaaaacccGTTGCAGATAACTGGTACAAGGATTatttctgaa
	*************************************************************************************************
celegans	(((((.(((..((((..(((.((((.((((((.(((((...................)))))))).))))))).)))...))))..))).)).))).	0.970 -15.31

celegans

chromosome:V:20379578:20379674:-1

intergenic

block1220 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.629	no	no	0.33/0.33	24/24/1.00	0.0	0.0	1	0	1	0	20	1	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UGACACG------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------TTGACACGATTGCCATAAATTTCA--------------------	24	1
celegans	aggagaaaaatgtttaaaatcaaaactatggtattaatttttgttcacttgttgTTGACACGATTGCCATAAATTTCAatttttaattaaaatgcttt
	**************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...............................................................	Y18D10A.25 Y18D10A.25 fkb-8
celegans	.((((........((((((..(((..(((((((.....((.((((.((.....)).)))).)).)))))))..)))....))))))........))))	0.800 -11.59

celegans

chromosome:I:12918013:12918110:1

intergenic

block4790 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.297	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	27	10	3arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UAAUUCC---------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------TTAATTCCTTCTGAAATAAC---------------------------	20	1
celegans	cttacactttaaaaatttgaaattactgtttcacaaaagtggtaaattttctggaaattttcacatctaaTTAATTCCTTCTGAAATAACaaggctaattttgaatgtaatttgtga
	*********************************************************************************************************************
celegans	.(((((..(((...(((..((((((((((((((...(((..((.((((...((((.....)).))...)))).))..))).)))))).....)).))))))..))).)))..)))))	0.510 -16.70

celegans

chromosome:IV:14444301:14444417:-1

intergenic ## {SimpF: WRM0622dH07 -1 fosmid,WRM0610aG11 -1 fosmid}

block72 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.545	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	11	12	5arm	2	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	------------GUCUCGC----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------GGTCTCGCAGCGATTTTT------------------------------------------------------	18	1
celegans	gaatactggtgGGTCTCGCAGCGATTTTTgaattttttaaataatttttttttttgaaaaattgtcgatttttatgaaattcc
	***********************************************************************************
celegans	((((....(((((..(((..(((((((((.((......(((....))).....)).))))))))))))..)))))...)))).	0.410 -10.00

celegans

chromosome:I:1621125:1621207:-1

intergenic ## {Repeats: dust 46431 46435 0 class=dust}

sblock40 [novel_multiarm_DicerNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.193	no	no	0.61/0.70	21/23/1.00	0.0 0.0 0.0	0.0 0.0 0.0	1 1 1	0 0 0	1 1 1	0 0 0	6 28 7	6 -18 1	5arm 5arm_loop_3arm 3arm	1 2 2	nd nd nd	0.29 0.57 0.30	2 8 2	3	1	-5	-1

		reads	miRBase family seed
seed	-----------------------------GAGUGGA------------------------------------	1	novel
seed	-------AGUCUCU----------------------------------------------------------	1	novel
seed	-------------------------------------------GACGAUG----------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------CGACGATGGCTGCGGCGAGGATG-------	23	1
	----------------------------GGAGTGGATGACGACGACGATGG---------------------	23	1
	------GAGTCTCTGTGTGCTGGTCGG---------------------------------------------	21	1
celegans	tccactGAGTCTCTGTGTGCTGGTCGGtGGAGTGGATGACGACGACGATGGCTGCGGCGAGGATGatgtgga
	************************************************************************
	>>>>>>>>>>>>>>>>>.................................................................	Y57G11C.57 Y57G11C.57 Y57G11C.57
celegans	(((((...(((..(((.(((.(((((.((..((........))..)).)))))))))))..)))...)))))	1.000 -22.40

celegans

chromosome:IV:14780841:14780912:-1

Same_strand|Boundary_non-coding|Y57G11C.57|Y57G11C.57 ## intergenic ## Y57G11C.57|pseudogene|Y57G11C.57| ## {Repeats: trf 32 41 0 class=trf} ## {SimpF: oe = 1.21 0 CpG}

block1547 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.612	no	no	0.42/0.42	26/26/0.00	0.0	0.0	1	0	1	0	0	26	3arm	2	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------UUUGACG------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------------------------------GTTTGACGTCTCATTCTTCCAAGATG	26	1
celegans	tatctgcagttggagttgaaccagtgtcttcagttgatccttggaccacaaagacggcgagaagcccaaggagaacaaagatggcagtcGTTTGACGTCTCATTCTTCCAAGATG
	*******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........	D2062.6 D2062.6 D2062.6
celegans	(((((..((.((((((..(((...((((.((..(((.((((((............(((.....)))))))))...))).)).))))...)))..)).)).))..))....)))))	0.730 -25.40

celegans

chromosome:II:2619437:2619551:-1

Opposite_strand|Boundary_non-coding|D2062.6|D2062.6 ## D2062.6|protein_coding|D2062.6|D2062.6 [Source:RefSeq_peptide;Acc:NP_494307] ## {SimpF: WRM0620bB07 -1 fosmid,D2062.6 -1 Expression_profile}

block1369 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.147	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	16	13	3arm	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------UUGACGA------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------GTTGACGATAGTCTTGATGATC----------------	22	1
celegans	gtcgtctcaacacaaccgctatgtgtctcctggtggctatatgcgtctaggcttcttcttctttgcggagaggaagttaGTTGACGATAGTCTTGATGATCgtggttcggtttcggc
	*********************************************************************************************************************
celegans	((((....(((..((((((....((((.......((((((...((((..((((((((((((.....))))))))))))....))))))))))..))))...))))))..))).))))	0.850 -35.20

celegans

chromosome:I:15064050:15064166:1

block8041 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.454	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	38	-2	5arm_loop	2	nd	0.48	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------UACGAGU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------ATACGAGTTGCAGTTGTTGTT-----------------------------------------------------------	21	1
celegans	gattttttatcatatcgcttgtacttctttttttctttATACGAGTTGCAGTTGTTGTTagttgatgacgagacgagtgtgagtagacgagtagaagccagcggggggagcaggggtt
	**********************************************************************************************************************
celegans	(((..((..((...(((((....(((((.(((.(((((((((..(((...((..(((.....)))..))..)))..))))))..))).))).)))))..)))))...))..))..)))	0.980 -27.60

celegans

chromosome:X:16003516:16003633:-1

intergenic ## {SimpF: WRM0616bB09 -1 fosmid,WRM0619bA05 -1 fosmid}

block3608 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	9	18	3arm	1	6	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------UUCAAGG---------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------CTTCAAGGTTTTCAGTTTTT---------	20	1
celegans	gacaaaaactttgagctgctgctttgactatagtttgcgaaattggtttttttcttcaattttgaaatatgttCTTCAAGGTTTTCAGTTTTTcttttatca
	******************************************************************************************************
	..........................................................................>>>>>>>>>>>+++++++++++++++++++++++++++	R02F2.4 R02F2.4 R02F2.4
celegans	((.((((.....((((((..(((((((..(((.....(((((((((.........))))))))).....)))...)))))))...))))))...)))).)).	0.990 -21.20

celegans

chromosome:III:5484089:5484190:1

Same_strand|Boundary_non-coding|R02F2.4|R02F2.4 ## R02F2.4|protein_coding|R02F2.4|R02F2.4 encodes a protein with six chitin-binding peritrophin-A domains. R02F2.4 transcripts are enriched during oogenesis. like CEJ-1 and CPG-2, R02F2.4 might participate in eggshell synthesis and early embryonic development, and R02F2.4's multiple peritrophin-A domains might enable mechanical cross-linking of chitin. however, R02F2.4 has no obvious function in mass RNAi assays. while R02F2.4 is more closely similar to CPG-2 than CEJ-1, it may be less strongly expressed (since it has substantially fewer ESTs) and thus be less important in development. [Source: WormBase] ## {Repeats: dust 15562 15582 0 class=dust} ## {SimpF: WRM0625cD07 1 fosmid,WRM061bH05 1 fosmid,WRM0618cB07 1 fosmid,WRM0640aD08 1 fosmid,WRM0621aE01 1 fosmid,WRM0626dF12 1 fosmid,WRM064dF01 1 fosmid}

block3334 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.842	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	2	13	3arm	1	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------CUGAAUU------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------ACTGAATTGCCGGTCGGG--	18	1
celegans	tcgggacataaaataagtgagaaggcaagcacatactatgatgaataacttACTGAATTGCCGGTCGGGag
	***********************************************************************
	---------------------------------------------------------------------------------	Y111B2A.14.1 Y111B2A.14 pqn-80
	---------------------------------------------------------------------------------	Y111B2A.14.2 Y111B2A.14 pqn-80
celegans	((..(((....(((.((((((........((.......))........))))))..)))....)))..)).	0.890 -8.29

celegans

chromosome:III:12639548:12639618:-1

Opposite_strand|Intronic_coding|Y111B2A.14.2|Y111B2A.14 ## Y111B2A.14|protein_coding|pqn-80|The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]

block6837 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.155	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	26	-1	3arm	1	nd	0.55	5	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------ACUGUAG--------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------AACTGTAGTATCCTCCAATT--------------------------	20	1
celegans	gtgaagtttttcagcttgtagtgaaacgggtcgaaaaacagtgaaacAACTGTAGTATCCTCCAATTaaagcacaaaatgacagaatcttgct
	*********************************************************************************************
celegans	((((..(((((((..((((.((......((..((...(((((......)))))....))..)).......))))))..))).))))..)))).	0.930 -18.02

celegans

chromosome:V:15426315:15426407:-1

intergenic ## {SimpF: WRM0641aB12 -1 fosmid}

block4360 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.459	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	20	10	5arm	1	nd	0.29	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------UAUCGGG--------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------GTATCGGGAGTTGCCATCGTT-------------------------------------------------------------------------	21	2
celegans	ccgccattttcgcagccgaaGTATCGGGAGTTGCCATCGTTaaaaagattcaaactgaatttatattccgatcaatcttgataaatgtcattggacgcgtggaatgtcatacgg
	******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................................................	C34D4.2 C34D4.2 C34D4.2
celegans	(((.(((((((((..((((..((((((((.(((..((((......((((((.....))))))......))))))))))))))).......))))..))).)))))).....)))	0.870 -24.60

celegans

chromosome:IV:7154630:7154743:-1

Opposite_strand|Boundary_non-coding|C34D4.2|C34D4.2 ## C34D4.2|protein_coding|C34D4.2|C34D4.2 [Source:RefSeq_peptide;Acc:NP_501125] ## {SimpF: WRM0631bH03 -1 fosmid,WRM067aF05 -1 fosmid,WRM0629dH06 -1 fosmid,WRM068aB11 -1 fosmid,WRM0622aC05 -1 fosmid,WRM067aG08 -1 fosmid,WRM0614bG05 -1 fosmid,WRM0635cG08 -1 fosmid,WRM062dB03 -1 fosmid,WRM0638cG05 -1 fosmid,WRM0614cF10 -1 fosmid,WRM0618cA02 -1 fosmid}

block4327 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.330	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	4	16	3arm	1	nd	0.20	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UAUCCAU----------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------GTATCCATCGTCTGCCATTC----	20	1
celegans	tggaggaaccatcgtgggcatcggtgatgcaagaggaggcaccgaatagacgggaccaattacttcGTATCCATCGTCTGCCATTCtttt
	******************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........	F38A5.8 F38A5.8 F38A5.8
celegans	.(((((((........((((.((((((((((((((..((..(((......)))..))..)).))).))))).))))..)))).)))))))	0.510 -24.60

celegans

chromosome:IV:6599860:6599949:-1

Opposite_strand|Boundary_non-coding|F38A5.8|F38A5.8 ## F38A5.8|protein_coding|F38A5.8|F38A5.8 [Source:RefSeq_peptide;Acc:NP_501014] ## {SimpF: F38A5.8 -1 Expression_profile,WRM0626bB10 -1 fosmid,WRM0640dC01 -1 fosmid,WRM0618cA01 -1 fosmid}

block5414 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.28/0.31	25/26/0.00	0.0	0.2	4	0	1	0	15	5	3arm	2	nd	0.23	2	4	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------CAUAUUA---------------------------------	4	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTTC---------------	26	3
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTT----------------	25	1
celegans	tcattgttatattcgaatttaaaatttccgtaatattgattcttttataatcaGCATATTATTGATTGATTCCAAGTTCgattagatcattgat
	**********************************************************************************************
	...............................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y59E9AR.8 Y59E9AR.8 Y59E9AR.8
celegans	(((.((...((.((((((((..((((((.((((((((((((.......)))))..))))))).))..))))..)))))))).))...)).))).	1.000 -18.10

celegans

chromosome:IV:5246165:5246258:1

block1714 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.709	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	21	-3	5arm_loop	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------AGCCGUU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------CAGCCGTTAGGAATGCATCATGAT--------------------------------------------------------------	24	1
celegans	gcaagctcggtgggaacagatCAGCCGTTAGGAATGCATCATGATaatcacaaaagtgctagctgattctgactaatttgaatgtcgcgcggagatgaagttcttgc
	***********************************************************************************************************
celegans	((((((((.(((.((.((..((((..(((((((..((..(((.............)))...))...)))))))....)))).)))).))).)))........)))))	0.420 -22.82

celegans

chromosome:II:5867101:5867207:-1

intergenic ## {SimpF: WRM0627dH01 -1 fosmid,WRM0619cE01 -1 fosmid}

block3094 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.611	no	no	0.57/0.57	23/23/1.00	0.0	0.0	1	0	1	0	4	15	5arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----GGUGAUU-----------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GGGTGATTGCGGCCAATCTGAGT--------------------------------------------------------------------------------------	23	1
celegans	atccGGGTGATTGCGGCCAATCTGAGTcacgtcgttctcaacttctgcaattgttgcggcgacatcttctgtgacctgaatgctgccaatttaaatcaagaaaaatgcaagga
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	C18H2.1 C18H2.1 C18H2.1
celegans	.(((..(((((((((((...((...(((((((((.((.((((..........)))).)))))).......)))))..))..))))).))))...............))..)))	0.640 -24.27

celegans

chromosome:III:7670379:7670491:-1

Opposite_strand|Intronic_coding|C18H2.1|C18H2.1 ## C18H2.1|protein_coding|C18H2.1|C18H2.1 [Source:RefSeq_peptide;Acc:NP_498674] ## {SimpF: WRM0612dH07 -1 fosmid,WRM0623dA11 -1 fosmid,WRM064aE12 -1 fosmid,WRM061cG07 -1 fosmid,WRM0633bE08 -1 fosmid,WRM0613dD12 -1 fosmid,WRM0622cC10 -1 fosmid,WRM067aF03 -1 fosmid,WRM0633cH11 -1 fosmid,WRM0613bE05 -1 fosmid}

block5713 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.945	no	no	0.35/0.35	26/26/0.00	0.0	0.0	3	0	1	0	13	2	3arm	1	15	0.31	3	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------GAAUUUU-------------------------------	3	novel
		len	cloning frequencies
			CE1
	------------------------------------------------AGAATTTTCAGCCAAATCTATCGAAC-------------	26	3
celegans	ctatgttgatgcggtatgtttttgtttttgaaaaaaaattatattctaAGAATTTTCAGCCAAATCTATCGAACagttacaagatgg
	***************************************************************************************
	>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	R09E10.7 R09E10.7 pqn-55
celegans	((((.(((.(((((((....((((...(((((((....(((.....)))...))))))).))))..)))))..))....))).))))	0.620 -9.10

celegans

chromosome:IV:10288907:10288993:1

Same_strand|Boundary_coding|R09E10.7|R09E10.7 ## R09E10.7|protein_coding|pqn-55|The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] ## {SimpF: R09E10.7 1 Expression_profile,WRM062cC04 1 fosmid,WRM0618cB03 1 fosmid,WRM0641cG10 1 fosmid}

block6455 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.202	no	no	0.43/0.43	23/23/1.00	0.0	0.0	2	0	1	0	10	3	5arm	25	nd	0.30	3	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------AAAUAUA-------------------------------------------	1	novel
seed	-----------AAAUAUA---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------CAAATATAGTGACTCTGGCCGTT------------------------------------------------------	23	1
	------------------------------------CAAATATAGTGACTCTGGCCGTT----------------------------	23	1
celegans	gaccgttcacCAAATATAGTGACTCTGGCCGTTcacCAAATATAGTGACTCTGGCCGTTcaccaaatatagtgactctgaccgttca
	***************************************************************************************
celegans	((.((.(((.....((((((((...((((((.((((........))))...)))))).))))....)))).......))).)).)).	0.640 -17.80

celegans

chromosome:V:5285352:5285438:-1

intergenic ## {Repeats: trf 491 514 0 class=trf,trf 2106 2129 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid}

block6803 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.031	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	7	10	5arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	--------AUUAGAC------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------GATTAGACAGCAAGGTTTGGT-----------------------------------------------------------------------------------	21	1
celegans	aatgagaGATTAGACAGCAAGGTTTGGTgggattggaacaatttcatcttcatcttcttcttccggattccaccaacgaacatccaacttgcgtccttcgaaatcttcatt
	***************************************************************************************************************
	..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	C47E8.11 C47E8.11 C47E8.11
celegans	(((((.(((((.(((.(((((..(((((((((((((((......................))))).))))))))))...........))))))))......))))))))))	0.650 -26.67

celegans

chromosome:V:14688797:14688907:-1

Opposite_strand|Boundary_non-coding|C47E8.11|C47E8.11 ## C47E8.11|protein_coding|C47E8.11|C47E8.11 [Source:RefSeq_peptide;Acc:NP_001023716] ## {SimpF: WRM0640bF07 -1 fosmid,WRM0632dA11 -1 fosmid,WRM0621cA02 -1 fosmid}

block1500 [novel_lenNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.057	no	no	0.42/0.47	19/24/0.50	1.5	1.0	2	0	1	0	22	3	5arm	3	nd	0.33	4	2	1	na	na

		reads	miRBase family seed
seed	--------------------------GGAAGUU----------------------------------------------------------------------------------	1	novel
seed	-----------------------UUUGGAA-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------TGGAAGTTTCGGTTGTTGC-----------------------------------------------------------------------	19	1
	----------------------CTTTGGAAGTTTCGGTTGTTGCAT---------------------------------------------------------------------	24	1
celegans	gtcgaggcgcttgagtctgaagCTTTGGAAGTTTCGGTTGTTGCATctctacttttgagatactaatgatgttgcggtattggtcttaggcttaggcttaggcttaggcttaggc
	*******************************************************************************************************************
celegans	(((.(((((((((((((((.(((((.(((....(((((..(((.(((((.......)))))..)))..))....)))......))).))))))))))))))))....)))).)))	0.420 -34.40

celegans

chromosome:I:15072169:15072283:1

intergenic

block4230 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.684	no	no	0.44/0.44	18/18/0.00	0.0	0.0	2	0	1	0	2	8	3arm	1	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------UGCGUAG------------	2	miR-242
		len	cloning frequencies
			CE1
	-------------------------------------GTGCGTAGAATGAGGTTT--	18	2
celegans	gtgacatcattcgactccgtttttgatcacagtaaccGTGCGTAGAATGAGGTTTgc
	*********************************************************
	<<<<<<<<<<<<.......................................................	ZK354.3 ZK354.3 ZK354.3
celegans	..(((.((((((.((...(((.(((....))).))).....)).)))))).)))...	0.610 -8.50

celegans

chromosome:IV:5310173:5310229:-1

intergenic ## {SimpF: ZK354.3 -1 Expression_profile,WRM0631dA01 -1 fosmid}

block4242 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.327	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	6	22	5arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-------ACACAGU--------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GACACAGTTCAATGTTGCT---------------------------------------------------------------------------	19	1
celegans	gccatgGACACAGTTCAATGTTGCTattcacgtgaaaaggtaatcttgtttttttaaagtttccctaactcgcatttgtttgattgtgctgtgaacagga
	****************************************************************************************************
celegans	.((.((..((((((.((((...((.......((((..(((.((.(((.........))).)).)))...))))....))...)))).))))))..)))).	0.630 -20.70

celegans

chromosome:IV:5381075:5381174:-1

intergenic ## {SimpF: WRM0621dF11 -1 fosmid,WRM0612dE10 -1 fosmid,WRM066cH08 -1 fosmid,WRM0612cF05 -1 fosmid,WRM0636bF04 -1 fosmid,WRM0614bB03 -1 fosmid,WRM061aH06 -1 fosmid,WRM0621cG07 -1 fosmid}

block925 [novel_lenNOK_cloningOK_5varHIGH_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.348	no	no	0.35/0.38	21/26/0.60	3.8	1.4	5	0	1	0	13	-7	5arm_loop_3arm	2	nd	0.16	3	5	1	na	na

		reads	miRBase family seed
seed	----------------------UUUGAUG------------------------------------------------------	2	novel
seed	---------------UUGAUUG-------------------------------------------------------------	1	novel
seed	--------------GUUGAUU--------------------------------------------------------------	1	novel
seed	------------------AUUGUUU----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------GTTTGATGGTCTATCTAGTAG-----------------------------------------	21	2
	-------------GGTTGATTGTTTGATGGTCTATCT----------------------------------------------	24	1
	-----------------GATTGTTTGATGGTCTATCTAGTAG-----------------------------------------	25	1
	--------------GTTGATTGTTTGATGGTCTATCTAGT-------------------------------------------	26	1
celegans	cttcggcatttccGGTTGATTGTTTGATGGTCTATCTAGTAGacaagacgagaattaaactgatttttatggaaaatcttaag
	***********************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................	C10G11.9 C10G11.9 C10G11.9
celegans	(((.((..((((((...(((((((((((.((((((...)))))).........))))))).))))....))))))..)).)))	0.740 -15.40

celegans

chromosome:I:6275233:6275315:1

Opposite_strand|Boundary_non-coding|C10G11.9|C10G11.9 ## C10G11.9|protein_coding|C10G11.9|C10G11.9 [Source:RefSeq_peptide;Acc:NP_491812] ## {SimpF: oe = 1.42 0 CpG,yk549h6 1 RNAi,C10G11.9 1 Expression_profile,WRM063bD01 1 fosmid,WRM0641dD07 1 fosmid,WRM0630cE04 1 fosmid,WRM0614aA05 1 fosmid,WRM0636aC01 1 fosmid,WRM0639bG02 1 fosmid}

block1575 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.056	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	0	10	5arm	1	nd	0.29	4	1	1	na	na

		reads	miRBase family seed
seed	-UUCGUUA-------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TTTCGTTAGCGTGGAGCAAGT------------------------------------------------	21	1
celegans	TTTCGTTAGCGTGGAGCAAGTactgactctggaatttagacggaacagttcttgaaacggtagaacgaa
	*********************************************************************
celegans	.(((((((.(((....((((.((((..((((.........)))).)))).))))..))).))..)))))	1.000 -18.50

celegans

chromosome:II:3303350:3303418:-1

intergenic ## {SimpF: WRM0622bD02 -1 fosmid,WRM0637bB09 -1 fosmid,WRM0639dB12 -1 fosmid,WRM0628aD03 -1 fosmid}

block5286 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.363	no	no	0.22/0.22	18/18/0.00	0.0	0.0	1	0	1	0	20	1	3arm	3	nd	0.22	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------UUUUGAG------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------GTTTTGAGTTTTTTGTTT--------------------	18	1
celegans	caccacgtgttatgaaaaataaaaaatttttgcttgtcaGTTTTGAGTTTTTTGTTTcaatatttgactaacggatg
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y54G2A.37 Y54G2A.37 Y54G2A.37
	---------------------------------------------------------------------------------------	Y54G2A.13 Y54G2A.13 Y54G2A.13
celegans	..((....((((....(((((((((((((..(((....)))...))))))))))))).......))))....))...	0.890 -11.80

celegans

chromosome:IV:2817367:2817443:1

Same_strand|Intronic_coding|Y54G2A.37|Y54G2A.37 ## Opposite_strand|Intronic_coding|Y54G2A.13|Y54G2A.13 ## Y54G2A.37|protein_coding|Y54G2A.37|Y54G2A.37 [Source:RefSeq_peptide;Acc:NP_001023502] ## Y54G2A.13|protein_coding|Y54G2A.13|Y54G2A.13 [Source:RefSeq_peptide;Acc:NP_500256] ## {SimpF: WRM0618dD04 1 fosmid,CEOP4650 1 Operon}

block6603 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.112	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	0	38	3arm	4	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------UAUGAGC------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------------------GTATGAGCTGGAGCACCGAG	20	1
celegans	ttcgagctgctcacgtttcccttggagtaccccttgtgtagttgtctggatcctttgatcaagcggctgctgtagacgagtagtaccaccattgGTATGAGCTGGAGCACCGAG
	******************************************************************************************************************
celegans	.(((...(((((..((((((..(((.((((..((((((((((((.((.((((....)))).))))))))).....)))))..))))..)))..))...))))..))))).))).	1.000 -36.80

celegans

chromosome:V:8880357:8880470:-1

intergenic ## {SimpF: WRM0615aE12 -1 fosmid,WRM0627bB06 -1 fosmid,WRM0611cD09 -1 fosmid,oe = 1.14 0 CpG,WRM0638aA04 -1 fosmid,WRM0625aH11 -1 fosmid,WRM0632cD08 -1 fosmid,WRM0614bC01 -1 fosmid,WRM0639cH11 -1 fosmid,WRM0620dF01 -1 fosmid,WRM0632aF08 -1 fosmid,WRM0636aD03 -1 fosmid,WRM0630cG07 -1 fosmid,WRM0627cF05 -1 fosmid,WRM0628dF12 -1 fosmid,WRM0615bD11 -1 fosmid,WRM063bH07 -1 fosmid,WRM068aG12 -1 fosmid,W09B7.D -1 Expression_profile,WRM0614aB05 -1 fosmid}

block5325 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.678	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	8	4	5arm	1	nd	0.43	3	1	1	na	na

		reads	miRBase family seed
seed	---------UGGAUAU-------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------ATGGATATGTCGAAAAGGAGA------------------------------------------	21	1
celegans	attgggatATGGATATGTCGAAAAGGAGAgcaaataaaatggacttgtgaatcccttgatgcacccctcaa
	***********************************************************************
celegans	.(((((....((...((((((...(((..((((...........))))...))).))))))..)).)))))	0.890 -9.80

celegans

chromosome:IV:3897081:3897151:1

intergenic ## {SimpF: WRM068aF02 1 fosmid,WRM0628dD05 1 fosmid,WRM0634bC03 1 fosmid,WRM0641bD04 1 fosmid}

block4145 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.162	no	no	0.62/0.63	19/21/0.50	0.0	1.0	2	0	1	0	12	5	5arm	1	nd	0.52	4	2	1	na	na

		reads	miRBase family seed
seed	-------------CGCCGAG--------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	------------CCGCCGAGTTCTTGACCACAC-------------------------------------------------	21	1
	------------CCGCCGAGTTCTTGACCAC---------------------------------------------------	19	1
celegans	gtagcgtagacgCCGCCGAGTTCTTGACCACACttttgcaaattttaaaggaaatgtgaagttttaaggtgtccgtgcctac
	**********************************************************************************
	--------------------------------------------------------------------------------------------	ZK185.2 ZK185.2 ZK185.2
celegans	((((((..((((((....((..(((.((....((((((.......))))))....)).)))..))..))))))..))).)))	0.860 -21.10

celegans

chromosome:IV:4538650:4538731:-1

Opposite_strand|Intronic_coding|ZK185.2|ZK185.2 ## ZK185.2|protein_coding|ZK185.2|ZK185.2 encodes an ortholog of human SLC41A1 (OMIM:610801) and bacterial MgtE. like its orthologs, ZK185.2 is predicted to transport Mg(2+) into cells. ZK185.2 is paralogous to K07H8.2 and ZK1053.6, and has no obvious function in mass RNAi assays. [Source: WormBase] ## {SimpF: WRM0619bB07 -1 fosmid}

block7624 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.52/0.59	22/25/0.50	0.0	1.5	2	0	1	0	14	-7	5arm_loop	2	nd	0.36	5	2	1	na	na

		reads	miRBase family seed
seed	---------------CAUCACU----------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------GCATCACTCGGACACGGCTTTC--------------------------------------------------	22	1
	--------------GCATCACTCGGACACGGCTTTCAAT-----------------------------------------------	25	1
celegans	tccagcaagcccaaGCATCACTCGGACACGGCTTTCAATactgtaattgtccagttgatccatgtttggcgcaagctttttatgga
	**************************************************************************************
	--------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---	ZK402.3 ZK402.3 ZK402.3
celegans	((((((..((((((((((((((.(((((..((..........))...)))))))).))....))))))).))..)))......)))	0.500 -23.00

celegans

chromosome:X:1402504:1402589:-1

Opposite_strand|Boundary_coding|ZK402.3|ZK402.3 ## ZK402.3|protein_coding|ZK402.3|ZK402.3 [Source:RefSeq_peptide;Acc:NP_508262] ## {SimpF: WRM0625bG09 -1 fosmid,WRM0633aC09 -1 fosmid,WRM0617aH09 -1 fosmid,WRM064cE08 -1 fosmid,ZK402.3 -1 Expression_profile,WRM0629aD05 -1 fosmid,WRM0635cC09 -1 fosmid,WRM0636bA02 -1 fosmid,WRM063cH01 -1 fosmid,WRM0639aA01 -1 fosmid}

block5998 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.342	no	no	0.35/0.35	20/20/1.00	0.0	0.0	2	0	1	0	24	-4	5arm_loop_3arm	1	nd	0.35	4	2	1	na	na

		reads	miRBase family seed
seed	-------------------------AAGCUCU----------------------------------------	2	novel
		len	cloning frequencies
			CE1
	------------------------TAAGCTCTCGGAATTTTCTT----------------------------	20	2
celegans	tcgttatcagattttataaattagTAAGCTCTCGGAATTTTCTTaaattttcagttttaaagtcaaaacgac
	************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24a.1 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24h Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24d.1 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24a.3 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24d.6 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24d.2 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24g Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24d.9 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24d.4 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24a.2 Y57G11C.24 eps-8
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.24d.7 Y57G11C.24 eps-8
celegans	(((((....(((((((.........(((((...(((((((....))))))).))))))))))))..))))).	0.640 -8.70

celegans

chromosome:IV:14880792:14880863:1

Same_strand|Intronic_non-coding|Y57G11C.24a.2|Y57G11C.24 ## Same_strand|Intronic_coding|Y57G11C.24g|Y57G11C.24 ## Same_strand|Boundary_non-coding|Y57G11C.24d.8|Y57G11C.24 ## Y57G11C.24|protein_coding|eps-8|eps-8 is predicted to encode five protein isoforms with similarity to mouse epidermal growth factor receptor kinase substrate that affects embryonic viability, growth, locomotion, osmoregulation, and larval viability. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] ## {SimpF: WRM0628aH09 1 fosmid,WRM0617bF06 1 fosmid,WRM0619cE05 1 fosmid,[cgc5194]:gei-19 1 RNAi}

block7645 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	17	3	5arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------------------GAUAUGU------------------------------------------------------------------------------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	-----------------TGATATGTTGTTGATGCC--------------------------------------------------------------------------	18	1
celegans	gtgaaatacgatgctgaTGATATGTTGTTGATGCCgtaattattatcaaaatacttctaatctctatcaataccaacatccacaacatatcacaccatctatatccaca
	*************************************************************************************************************
celegans	(((..(((.((((.((.(((((((((((.((((..(((................................)))...)))).))))))))))))).)))))))...))).	0.860 -24.45

celegans

chromosome:X:1669968:1670076:-1

intergenic ## {SimpF: WRM066aA09 -1 fosmid,WRM067dD02 -1 fosmid,WRM0641aB04 -1 fosmid,WRM0612cB05 -1 fosmid}

block4206 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.676	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	2	13	5arm	2	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	---AAAUAUG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GAAATATGATGAGCCCGTTGG---------------------------------------------------------	21	1
celegans	cgGAAATATGATGAGCCCGTTGGactatctgcatgtcactttgctgctcattggcccgaaggcgatcgaagtattgttcc
	********************************************************************************
celegans	.((((((((..((((((..((((.(((...(((.((......)))))....))).)))).)))..)))..)))))..)))	0.670 -17.60

celegans

chromosome:IV:5217566:5217645:-1

intergenic ## {SimpF: WRM0616bF04 -1 fosmid,WRM0632cH10 -1 fosmid,WRM067dF01 -1 fosmid,yk578d4 -1 RNAi}

block5541 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.273	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	0	36	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-CGAGGUC-------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TCGAGGTCTGGCTGAAACT--------------------------------------------------------------------------------------------	19	1
celegans	TCGAGGTCTGGCTGAAACTaaatttcgaattttatattggaataagtttatttttgaaaatggaaattttaattcaaatgtgacatcgtgtatagtctaagcctacattgg
	***************************************************************************************************************
celegans	.(((.((..((((...((((.((..(((...(((((((.((((.((...((((((......)))))).)).)))).)))))))..))).)).))))...)))).)).))).	0.930 -20.20

celegans

chromosome:IV:6769046:6769156:1

intergenic ## {SimpF: WRM0610aG01 1 fosmid,WRM0632aG04 1 fosmid,WRM069aB01 1 fosmid,WRM0632cH07 1 fosmid}

block8084 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.362	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	6	-2	5arm_loop	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-------CACAAUG---------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------TCACAATGATATTGCCGAG----------------------------	19	1
celegans	ccgagcTCACAATGATATTGCCGAGaagctggaaaattacgaagtgggattgg
	*****************************************************
celegans	((((.(((((..((((.((.(((......))))).))))....))))).))))	1.000 -10.10

celegans

chromosome:X:16952200:16952252:-1

intergenic ## {SimpF: WRM068bE11 -1 fosmid,WRM069cH11 -1 fosmid}

block4130 [novel_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.50/0.50	24/24/1.00	0.0	0.0	1	0	1	0	2	29	5arm	1	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	---UGUGUGU---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTGTGTGTGTGCAGTAGGCAATTG-----------------------------------------------------------------------------------------	24	1
celegans	gcGTGTGTGTGTGCAGTAGGCAATTGagaaaagtcagaaataattcaatttttcgcaatttctcgtaaaatcgattttttggttttttttgttttgccatgtttttgccacgcgt
	*******************************************************************************************************************
	<<<<<<<<<<<<<<<<<............................................................................................................	Y24D9B.1 Y24D9B.1 Y24D9B.1
celegans	(((((((.(((.(((...(((((.((((((((..((((((....((.(((((.((........)).))))).)).))))))..))))))))..))))).)))...))))))))))	0.870 -32.40

celegans

chromosome:IV:4317308:4317422:-1

Opposite_strand|Boundary_non-coding|Y24D9B.1|Y24D9B.1 ## Y24D9B.1|protein_coding|Y24D9B.1|Y24D9B.1 [Source:RefSeq_peptide;Acc:NP_500540] ## {SimpF: WRM0621dF06 -1 fosmid}

block7412 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	32	0	5arm	3	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------UUGUUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------GTTGTTGGGAGAGTTATTGGGATC-----------------------------------------------------------	24	1
celegans	gacggcagtgtagatggcattcatcttgaggtGTTGTTGGGAGAGTTATTGGGATCgatttgatcgtgatttgaatgacaatttcctccttatttataccaactatttgtcatca
	*******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............................................................................	H12D21.1 H12D21.1 nspa-1
celegans	((.(((((.((((.(((.((.......((((.(((((((...(((((((...((((.....)))))))))))...)))))))..)))).......)).))).))))))))).)).	0.430 -29.54

celegans

chromosome:V:14886862:14886976:1

Opposite_strand|Boundary_non-coding|H12D21.1|H12D21.1 ## H12D21.1|protein_coding|nspa-1|Nematode Specific Peptide family/group A family member (nspa-2) [Source:RefSeq_peptide;Acc:NP_001024007] ## {SimpF: WRM0625cE01 1 fosmid,yk576e10 1 RNAi,WRM0628aA08 1 fosmid,WRM0613bG05 1 fosmid,WRM0633cB11 1 fosmid}

block8 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.970	no	no	0.68/0.68	19/19/0.00	0.0	0.0	1	0	1	0	21	-2	3arm_loop	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------GUGGGAG--------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------TGTGGGAGGCCGGTCACCT---------------------	19	1
celegans	gatgtgcgtctcgatctccttgcgggcagcctcgacgttaTGTGGGAGGCCGGTCACCTggaatagaaatagttatattt
	********************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------	F53G12.5a.1 F53G12.5 mex-3
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------	F53G12.5b F53G12.5 mex-3
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------	F53G12.5a.2 F53G12.5 mex-3
celegans	(((((((...((....(((.....(((.(((((..((.....)).)))))..)))....)))...))....)).))))).	0.760 -15.50

celegans

chromosome:I:132080:132159:-1

Opposite_strand|Boundary_coding|F53G12.5a.2|F53G12.5 ## F53G12.5|protein_coding|mex-3|mex-3 encodes two KH domain-containing RNA binding proteins. in the early embryo, maternally provided MEX-3 is required for specifying the identities of the anterior AB blastomere and its descendants, as well as for the identity of the P3 blastomere and proper segregation of the germline P granules. mex-3 mRNA is distributed uniformly in the syncytial core of the adult distal gonad, mature oocytes, and early 1-cell stage embryos, but then becomes more prominent in the AB blastomere and its daughters by the 4-cell stage after which it is rapidly degraded save for the D and P4 blastomeres. MEX-3 protein is also detected uniformly in the cytoplasm of oocytes and 1-cell stage embryos, but like the mRNA, becomes more abundant in AB and its daughters at the 2- and 4-cell stages, respectively, before disappearing. MEX-3 is also detected in association with P granules from the 2-cell stage until the late stages of embryogenesis. [Source: WormBase] ## {SimpF: WRM065cD06 -1 fosmid,WRM0613bH11 -1 fosmid,F53G12.5 -1 Expression_profile,WRM064bF03 -1 fosmid,WRM0638dH05 -1 fosmid}

block4800 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.023	no	no	0.29/0.29	21/21/1.00	0.0	0.0	2	0	1	0	20	7	5arm	1	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------AAUAUUA------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------TAATATTAGTCCAGTCCAATT-----------------------------------------------------------	21	2
celegans	agataaaactttgtttatatTAATATTAGTCCAGTCCAATTcaaaaataaaatcgaattttagagtttgacaactatttaaaaaaaacattcattttgtc
	****************************************************************************************************
celegans	.(((((((...(((((...((((...((((...(((.(((((.(((((........))))).))))).))).)))).))))...)))))....)))))))	0.990 -16.00

celegans

chromosome:IV:14556530:14556629:-1

intergenic ## {SimpF: WRM0613aA05 -1 fosmid,WRM0616aA10 -1 fosmid,WRM0620cH03 -1 fosmid}

block5113 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.423	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	7	32	5arm	1	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	--------AUUAUCG---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------TATTATCGTCGAAATGTTAT---------------------------------------------------------------------------------------------	20	1
celegans	tccatatTATTATCGTCGAAATGTTATaaatttgagaggaaaaggaaaatcagtttttagtctaaacaaatatgaaaaatgattcactgccagcaaagcttgtttgagattttaattggg
	************************************************************************************************************************
celegans	.(((.((((..(((.(((((..((......((((...((...((...(((((.((((((.............)))))).)))))..)).))..))))))...))))))))..))))))).	0.850 -19.22

celegans

chromosome:IV:16566054:16566173:-1

intergenic ## {SimpF: WRM0630bE09 -1 fosmid,WRM0621bE04 -1 fosmid}

block7617 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.682	no	no	0.27/0.27	22/22/1.00	0.0	0.0	1	0	1	0	3	29	5arm	1	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	----UUCUUUG-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---GTTCTTTGCGATTTTAACATAT-----------------------------------------------------------------------------------	22	1
celegans	tttGTTCTTTGCGATTTTAACATATtatatggtatttgttttgtatgcattagtgaagaaccgatcgatatgacgagtagaaaatgttgaaccggagtgggggtcaaa
	************************************************************************************************************
celegans	.(((..((..((...((((((((.((......((((((((.(((.((.((..((.....))..))))))).)))))))).)).)))))))).....))..))..))).	0.510 -18.70

celegans

chromosome:X:1208123:1208230:-1

intergenic ## {SimpF: WRM0618bB08 -1 fosmid,WRM0631bF01 1 fosmid,WRM0628aH03 -1 fosmid,WRM0629aA11 -1 fosmid,WRM0635cD01 -1 fosmid,WRM0639cB04 -1 fosmid,WRM0617dC12 -1 fosmid,WRM068aG07 -1 fosmid,WRM0621bD10 1 fosmid}

block3139 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.435	no	no	0.23/0.23	22/22/1.00	0.0	0.0	1	0	1	0	10	-1	3arm	1	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------GAGCAUU------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------AGAGCATTTATTTTCATTTTTC----------	22	1
celegans	gcttctacttattaagaatggaaacgatccatgacatcctAGAGCATTTATTTTCATTTTTCttggtgtgca
	************************************************************************
	----------------------------------------------------------------------------------	C02D5.3a C02D5.3 gsto-2
celegans	((...((((....(((((((((((.((...(((...((...)).))))).)))))))))))...)))).)).	0.670 -9.90

celegans

chromosome:III:8554294:8554365:-1

Opposite_strand|Intronic_coding|C02D5.3a|C02D5.3 ## Opposite_strand|Boundary_non-coding|C02D5.3b|C02D5.3 ## C02D5.3|protein_coding|gsto-2|C02D5.3 is predicted to encode, by alternative splicing and an internal promoter, three partially non-overlapping putative omega-class glutathione transferases (GST. EC 2.5.1.18) which, like their paralog GSTO-1, might have thiol oxidoreductase and dehydroascorbate reductase activity. other C02D5.3 paralogs include GST-44 and K10F12.4. C02D5.3 has no obvious function in mass RNAi assays. [Source: WormBase] ## {SimpF: WRM0625dF04 -1 fosmid,WRM0611bF07 -1 fosmid,WRM0639dC05 -1 fosmid,C02D5.3 -1 Expression_profile,WRM063aE04 -1 fosmid,WRM0618cD06 -1 fosmid,WRM066dD11 -1 fosmid,WRM0623dH08 -1 fosmid}

block5819 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.521	no	no	0.54/0.54	24/24/1.00	0.0	0.0	1	0	1	0	10	0	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------UUCAGCC--------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------GTTCAGCCATTCGTTCTCCGCTAG----------	24	1
celegans	attctatacaatttaccgttaacttttggtttgccgagttaaGTTCAGCCATTCGTTCTCCGCTAGattgaaggaa
	****************************************************************************
	--------------------------------------------------------------------------------------	Y67H2A.2b Y67H2A.2 Y67H2A.2
	--------------------------------------------------------------------------------------	Y67H2A.2a Y67H2A.2 Y67H2A.2
celegans	.((((...(((((((.((..(((...(((((.((........))..)))))...)))...)).)))))))..))))	0.760 -12.10

celegans

chromosome:IV:13290963:13291038:1

Opposite_strand|Intronic_coding|Y67H2A.2a|Y67H2A.2 ## Opposite_strand|Intronic_non-coding|Y67H2A.2b|Y67H2A.2 ## Y67H2A.2|protein_coding|Y67H2A.2|Y67H2A.2a [Source:RefSeq_peptide;Acc:NP_001041056] ## {SimpF: CEOP4539 -1 Operon}

block4909 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.801	no	no	0.33/0.33	21/21/1.00	0.0	0.0	2	0	1	0	11	14	3arm	1	nd	0.33	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------AGGGUUG------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------TAGGGTTGATGAGTTAAGTTT-----------	21	2
celegans	gtgttttaaattattttttttctgtttcaatttaaaagtatagttgttcgtaatcaaattttattcgtTAGGGTTGATGAGTTAAGTTTtttcaaaacaa
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	Y73F8A.5 Y73F8A.5 Y73F8A.5
celegans	.(((((((((..((((...(((....((((((..((.(((...(((........)))....)))...))..)))))).)))..))))..))).)))))).	0.430 -10.50

celegans

chromosome:IV:15260381:15260480:-1

Opposite_strand|Intronic_coding|Y73F8A.5|Y73F8A.5 ## Y73F8A.5|protein_coding|Y73F8A.5|Y73F8A.5 [Source:RefSeq_peptide;Acc:NP_502841] ## {SimpF: WRM0633cB03 -1 fosmid,WRM0641cC01 -1 fosmid,WRM0615cG05 -1 fosmid}

block6152 [novel_lenNOK_shortStem_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.016	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	0	-1	3arm	1	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------UUCUUAG----------	1	novel
		len	cloning frequencies
			CE1
	---------------------TTTCTTAGGGCTTTTGGC	18	1
celegans	tcagaaaacttaaggacacatTTTCTTAGGGCTTTTGGC
	***************************************
celegans	((((((..((((((((......))))))))..)))))).	1.000 -11.00

celegans

chromosome:IV:16040128:16040166:1

intergenic

block2210 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.377	no	no	0.48/0.48	23/23/1.00	0.0	0.0	2	0	1	0	2	13	5arm	1	nd	0.26	3	2	1	na	na

		reads	miRBase family seed
seed	---CUUGUGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--GCTTGTGACATTTGACGCCTTTG---------------------------------------------------------------	23	2
celegans	caGCTTGTGACATTTGACGCCTTTGaaaagctgctttgtcctcaaagcatgataggttccgggttgaaaaaaatgttttcagtcggct
	****************************************************************************************
celegans	.((((((.(((((((...((((..(((....(((((((....))))))).......))).))))......)))))))..))...))))	0.600 -18.80

celegans

chromosome:II:3373793:3373880:1

intergenic ## {SimpF: WRM0636cD03 1 fosmid,WRM0610dH04 1 fosmid,WRM069bC03 1 fosmid,WRM0613aE01 1 fosmid,WRM0631bH09 1 fosmid}

block3061 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.638	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	34	0	3arm	1	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------GAUGAGU---------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------GGATGAGTAGGAGTTGAAG----------------------------------	19	1
celegans	tctctcggttttcgggcactctcgctgctgtcggagctggagccataactgtatttggattGGATGAGTAGGAGTTGAAGatcctgatagttttgaaggtgcggcttttaggga
	******************************************************************************************************************
celegans	(((((.((((.....((((..(((..(((((((((.((..(((....(((.(((((.....))))))))....)))..)).))).))))))..)))..))))))))...)))))	0.460 -29.30

celegans

chromosome:III:6905840:6905953:-1

intergenic ## {SimpF: T07E3.3 -1 Expression_profile,WRM0619bC05 -1 fosmid,WRM0631dH02 -1 fosmid,WRM0641dA07 -1 fosmid,WRM0626cC01 -1 fosmid,WRM0614bF02 -1 fosmid,WRM0627bE11 -1 fosmid,WRM0627bD12 -1 fosmid}

block4690 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.36/0.36	25/25/0.00	0.0	0.0	1	0	1	0	11	-2	3arm_loop	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------AUUUGUC----------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------GATTTGTCTGCCATCTTGATGTTTT-----------	25	1
celegans	ttcttgtggtttccgattgcatcgactggcacgaaagctGATTTGTCTGCCATCTTGATGTTTTctgaaatggaa
	***************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........................	Y45F10B.3 Y45F10B.3 Y45F10B.3
celegans	........(((((.((..(((((((.(((((((((......)))))..))))..)))))))..)).)))))....	1.000 -21.00

celegans

chromosome:IV:13593597:13593671:-1

Opposite_strand|Boundary_non-coding|Y45F10B.3|Y45F10B.3 ## Y45F10B.3|protein_coding|Y45F10B.3|Y45F10B.3 [Source:RefSeq_peptide;Acc:NP_502622] ## {SimpF: WRM0615bH05 -1 fosmid,Y45F10B.3 -1 Expression_profile}

block6593 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.112	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	0	38	3arm	4	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------UAUGAGC------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------------------GTATGAGCTGGAGCACCGAG	20	1
celegans	ttcgagctgctcacgtttcccttggagtaccccttgtgtagttgtctggatcctttgatcaagcggctgctgtagacgagtagtaccaccattgGTATGAGCTGGAGCACCGAG
	******************************************************************************************************************
celegans	.(((...(((((..((((((..(((.((((..((((((((((((.((.((((....)))).))))))))).....)))))..))))..)))..))...))))..))))).))).	1.000 -36.80

celegans

chromosome:V:8838263:8838376:-1

intergenic ## {SimpF: WRM067dE11 -1 fosmid,WRM0615bG03 -1 fosmid,WRM0620bE07 -1 fosmid,oe = 1.14 0 CpG,WRM0612bC01 -1 fosmid,WRM067aB04 -1 fosmid,WRM0615dE07 -1 fosmid,WRM0620cD11 -1 fosmid,WRM0615bD11 -1 fosmid,WRM0639aE12 -1 fosmid,WRM0618aE10 -1 fosmid,WRM0626cH02 -1 fosmid}

block1257 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.224	no	no	0.52/0.52	23/23/1.00	0.0	0.0	1	0	1	0	19	7	3arm	1	nd	0.13	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UUCAGAG----------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------GTTCAGAGGGGGGTAATCATGAG-------------------	23	1
celegans	gccactttaattccgtctcatttgatatccctgagacgtagacagccgctgatttttattttttaaaaagGTTCAGAGGGGGGTAATCATGAGaagaacgaaaaaaattggc
	****************************************************************************************************************
celegans	((((.(((..(((..(((((..(((((((((..............((.((((((((((.....))))))...)))).)))))))).)))))))).....)))..))).))))	0.460 -24.83

celegans

chromosome:I:14182540:14182651:1

intergenic

block1672 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.36/0.36	25/25/0.00	0.0	0.0	2	0	1	0	8	16	5arm	1	nd	0.16	2	2	1	na	na

		reads	miRBase family seed
seed	---------UCAAUCU---------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------GTCAATCTTGAATTGCCAAGTAGTT----------------------------------------------------------------------------------	25	2
celegans	ggaatatcGTCAATCTTGAATTGCCAAGTAGTTaagtaatgattgaaattgtctttttccgttctgtttcaatatttattgattatttttcatgttttagattcacgtgtaaacc
	*******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<.....................................................................................................	F09C12.8 F09C12.8 F09C12.8
celegans	((..((((((.(((((.((((((..((((((((((......((((((((................)))))))).....))))))))))..)).)))).))))).))).)))..))	1.000 -20.49

celegans

chromosome:II:5112646:5112760:-1

Opposite_strand|Boundary_non-coding|F09C12.8|F09C12.8 ## F09C12.8|protein_coding|F09C12.8|F09C12.8 encodes an ortholog, predicted to be catalytically inactive, of Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736). F09C12.8 is also paralogous to C. elegans C52E4.7, F53B6.7, F55A11.11, and T07F12.1. [Source: WormBase] ## {SimpF: WRM0613dB07 -1 fosmid,WRM0639aD02 -1 fosmid,WRM0621bD01 -1 fosmid,WRM062cF07 -1 fosmid,WRM0619cA05 -1 fosmid,WRM0623bH01 -1 fosmid,WRM068aD06 -1 fosmid,WRM0616dA04 -1 fosmid,WRM0620bB06 -1 fosmid,WRM0627aE10 -1 fosmid,WRM0619dB08 -1 fosmid,WRM0624aH11 -1 fosmid}

block4213 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.28/0.31	25/26/0.00	0.0	0.2	4	0	1	0	15	5	3arm	2	nd	0.23	2	4	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------CAUAUUA---------------------------------	4	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTTC---------------	26	3
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTT----------------	25	1
celegans	tcattgttatattcgaatttaaaatttccgtaatattgattcttttataatcaGCATATTATTGATTGATTCCAAGTTCgattagatcattgat
	**********************************************************************************************
	...............................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y59E9AR.2 Y59E9AR.2 Y59E9AR.2
celegans	(((.((...((.((((((((..((((((.((((((((((((.......)))))..))))))).))..))))..)))))))).))...)).))).	1.000 -18.10

celegans

chromosome:IV:5244942:5245035:-1

block4844 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.088	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	1	15	3arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------UACGUGA--------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------TTACGTGAGAGTGGTTGTAGC-	21	1
celegans	gcttgcagcgcccccacgagaaatttccacggtggtacacactagtgtcggatatTTACGTGAGAGTGGTTGTAGCt
	*****************************************************************************
celegans	((.((((((((...((((..((((.((((((.((((....)))).))).))).)))).))))...))).))))))).	1.000 -23.40

celegans

chromosome:IV:14781667:14781743:-1

intergenic

block3198 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.133	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	9	12	5arm	1	nd	0.48	5	1	1	na	na

		reads	miRBase family seed
seed	----------UAGAUGG------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------GTAGATGGTCCAGAAACAATT-----------------------------------------------------------------	21	1
celegans	attttgggtGTAGATGGTCCAGAAACAATTggttggaagggcaggaagccatctacaatgatcggtttgaggagtacacgtacacatttgaggta
	***********************************************************************************************
	---------------------------------------------------------------------------------------------------------	R10E11.1c R10E11.1 cbp-1
	---------------------------------------------------------------------------------------------------------	R10E11.1a R10E11.1 cbp-1
	---------------------------------------------------------------------------------------------------------	R10E11.1b R10E11.1 cbp-1
celegans	((((..(((((..(((.(((..((((.....((((....(((.....))).....)))).....))))..))).....)))..)))))..)))).	0.910 -21.80

celegans

chromosome:III:9774092:9774186:-1

Opposite_strand|Intronic_coding|R10E11.1a|R10E11.1 ## R10E11.1|protein_coding|cbp-1|cbp-1 encodes a homolog of the mammalian transcriptional cofactors CBP (OMIM:600140) and p300 (E1A-BINDING PROTEIN, 300-KD. OMIM:602700) that have been shown to possess histone acetyltransferase activity, and which, when mutated, lead to Rubinstein-Taybi syndrome (OMIM:180849) and colorectal cancer (OMIM:114500). at least one splicing form of CBP-1 exhibits histone acetyltransferase (HAT) activity in vitro and has a glutamine/asparagine-rich domain. CBP-1 is required during embryogenesis for differentiation of all non-neuronal somatic cell types. CBP-1 is expressed very early in embryogenesis, suggesting that it may interact with maternally provided transcription factors, such as SKN-1, to specific developmental fates. [Source: WormBase] ## {SimpF: WRM0625bD02 -1 fosmid,WRM0637cA07 -1 fosmid,WRM0626aE07 -1 fosmid,WRM069bA04 -1 fosmid,WRM0610bH10 -1 fosmid,WRM0611cD01 -1 fosmid,WRM0628dE06 -1 fosmid}

block6734 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.353	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	0	27	5arm	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	-UUUUUGA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TTTTTTGAGTAAAATATC-----------------------------------------------------------------------------	18	1
celegans	TTTTTTGAGTAAAATATCgaattttttgtattaattctgtaaattttataatttgcaactattttggcgtattctgcttgtttttatcagcgaat
	***********************************************************************************************
celegans	(((.((((..((((((..((((....(((...(((..((((((((....))))))))...)))...))).))))....))))))..)))).))).	0.570 -12.30

celegans

chromosome:V:12728269:12728363:-1

intergenic ## {Repeats: dust 56557 56575 0 class=dust} ## {SimpF: WRM068dG12 -1 fosmid,R11D1.9 -1 Expression_profile,WRM0640cD05 -1 fosmid,WRM062cC08 -1 fosmid,WRM0640bE06 -1 fosmid,WRM0627cA12 -1 fosmid}

sblock35 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.50/0.61	21/23/1.00	0.0 1.7	1.0 2.3	2 3	0 0	1 1	0 0	28 11	8 19	5arm 3arm	31 31	nd nd	0.26 0.27	3 4	5	1	11	8

		reads	miRBase family seed
seed	-----------------------------GUUGAGU------------------------------------------------------------------------------------	2	novel
seed	-----------------------------------------------------------------------------------UUCCAAG------------------------------	2	novel
seed	----------------------------------------------------------------------------------------AGGAGAC-------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------GTTCCAAGGAGACGGTATGGT-----------------	21	1
	----------------------------TGTTGAGTGGACCAACACCCC-----------------------------------------------------------------------	21	1
	---------------------------------------------------------------------------------------AAGGAGACGGTATGGTTCGTCG-----------	22	1
	----------------------------------------------------------------------------------GTTCCAAGGAGACGGTATGGTT----------------	22	1
	----------------------------TGTTGAGTGGACCAACACCCCGG---------------------------------------------------------------------	23	1
celegans	aggaggatacaaacaacgaccgtatcacTGTTGAGTGGACCAACACCCCGGatggagctgccaagcaattccgccgtgaatgGTTCCAAGGAGACGGTATGGTTCGTCGtaagaacctcc
	************************************************************************************************************************
celegans	.(((((......((.((((((((...((((((...(((((((.(((..((((....(((....)))...))))..)))..)))).)))....))))))))))).))).)).....)))))	0.860 -41.30

celegans

chromosome:IV:5457310:5457429:-1

intergenic ## {SimpF: WRM0641cA07 -1 fosmid,Y4C6A.C -1 Expression_profile,WRM0620aH12 -1 fosmid,WRM0627dA08 -1 fosmid}

block2128 [novel_cloningOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.765	no	no	0.52/0.52	23/23/1.00	0.0	0.0	5	0	1	0	10	21	5arm	1	nd	0.39	3	5	1	na	na

		reads	miRBase family seed
seed	-----------AUGAGUG---------------------------------------------------------------------------------------------	5	novel
		len	cloning frequencies
			CE1
	----------GATGAGTGGCAAGTGGAATGAGC------------------------------------------------------------------------------	23	5
celegans	aaacatccttGATGAGTGGCAAGTGGAATGAGCaaaaagagggtagctggacggagcactggttggttggttggttggttgaagggcagggcacttccaatggacgatgtt
	***************************************************************************************************************
celegans	.((((((.((.((...(((.(((((...((..(((..((.((.((((((..(((....)))..)))))).))..))..))).....))...)))))))))).)).))))))	0.510 -22.80

celegans

chromosome:II:842885:842995:1

intergenic ## {SimpF: WRM068cE11 1 fosmid,WRM0622dC12 1 fosmid,F28A10.9 1 Expression_profile,WRM0627cG11 1 fosmid,WRM062cB08 1 fosmid,WRM0638dH08 1 fosmid,WRM0629aG02 1 fosmid,WRM067dE12 1 fosmid,WRM0626dF08 1 fosmid,WRM066aC01 1 fosmid,WRM0636cH07 1 fosmid,WRM061aB10 1 fosmid}

block2823 [novel_cloningHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.349	no	no	0.57/0.72	18/23/0.74	0.0	0.8	30	0	1	0	10	21	5arm	1	nd	0.38	4	34	1	na	na

		reads	miRBase family seed
seed	-----------CGUGCCC----------------------------------------------------------------------------------------------------	31	novel
seed	-----------------CUGCCUG----------------------------------------------------------------------------------------------	2	novel
seed	---------------CCCUGCC------------------------------------------------------------------------------------------------	1	miR-789a/789b
		len	cloning frequencies
			CE1
	----------TCGTGCCCTGCCTGGGTCACC---------------------------------------------------------------------------------------	21	22
	----------TCGTGCCCTGCCTGGGTC------------------------------------------------------------------------------------------	18	8
	----------------CCTGCCTGGGTCACCAATTGT---------------------------------------------------------------------------------	21	2
	--------------GCCCTGCCTGGGTCACCAA-------------------------------------------------------------------------------------	19	1
	----------TCGTGCCCTGCCTGGGTCACCAA-------------------------------------------------------------------------------------	23	1
celegans	gattgcaggtTCGTGCCCTGCCTGGGTCACCaattgtcgaattgatctcgtcgacagatgtagattgtgaagtttcgttgttgtagtatctcaaacttgggtaattaaaccttttatc
	**********************************************************************************************************************
celegans	(((...(((((..(((((....((((..((((((...((((.((((((((((....)))).))))))......))))..))))..))..)))).....)))))....)))))...)))	0.930 -28.00

celegans

chromosome:III:2430989:2431106:-1

intergenic ## {SimpF: WRM0638bF12 -1 fosmid,WRM0633dB01 -1 fosmid,WRM0632dH11 -1 fosmid}

block7131 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.766	no	no	0.50/0.57	22/26/0.33	0.0	0.0	4	0	1	0	1	16	5arm	2	nd	0.38	5	6	1	na	na

		reads	miRBase family seed
seed	--CAUCGAC----------------------------------------------------------------------------------	5	novel
seed	-CCAUCGA-----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-CCATCGACACCAACTTGACCGTTGTT----------------------------------------------------------------	26	4
	CCCATCGACACCAACTTGACCGT--------------------------------------------------------------------	23	1
	-CCATCGACACCAACTTGACCGT--------------------------------------------------------------------	22	1
celegans	cCCATCGACACCAACTTGACCGTTGTTttgttctttttcaacgatattctaaccggaaagatgaactgatttcatttggtttctcagaagg
	*******************************************************************************************
celegans	.((.((((.(((((..(((.....(((..((((((((((..((..........)))))))).)))).))).))).))))).))...)).))	0.630 -13.10

celegans

chromosome:V:5587376:5587466:1

intergenic ## {SimpF: WRM0631cD06 1 fosmid,WRM0616aH11 1 fosmid,WRM0624bF07 1 fosmid,WRM0628dG08 1 fosmid,WRM0625aB06 1 fosmid}

block8314 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.045	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	16	11	5arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------AAAAAAA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------CAAAAAAAAACAGTTTCAA-----------------------------------------------------------------	19	1
celegans	gaactatgtgtcacaaCAAAAAAAAACAGTTTCAAaaattttgtgtaaaaattaaacaacataaaagaagcggtttttgtgatcagatcatcatcagtta
	****************************************************************************************************
celegans	.(((((((((((....((...((((((.(((((.....((((((((............))))))))))))).)))))).))....)).)).))).)))).	0.910 -16.20

celegans

chromosome:X:6087837:6087936:1

intergenic ## {Repeats: dust 31970 31978 0 class=dust} ## {SimpF: WRM0613aH05 1 fosmid,WRM0617aB05 1 fosmid,WRM0635cH04 1 fosmid,WRM069cC11 1 fosmid,WRM0637dA08 1 fosmid,WRM0621cD06 1 fosmid,WRM0621aE04 1 fosmid,WRM069dE04 1 fosmid,C45B2.1 1 Expression_profile,WRM0615aD11 1 fosmid,WRM0614cG03 1 fosmid,WRM0617aC05 1 fosmid}

block6728 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.062	no	no	0.42/0.42	24/24/1.00	0.0	0.0	2	0	1	0	26	3	3arm	2	nd	0.25	3	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------UUCUAUU------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------GTTCTATTTGGCATAGGTCTTCTG--------------------------	24	2
celegans	agctaataatacttcgttaatttcattttcggatttgcgtcaattagagtcaaatctagaaGTTCTATTTGGCATAGGTCTTCTGataggtcgacgacttcttgtattggt
	***************************************************************************************************************
	.....................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	K01D12.15 K01D12.15 K01D12.15
celegans	.(((((((.....((((..((((.(((...(((((((.(((((.((((.((.......))...)))).))))).)))))))...)))))))..)))).......)))))))	0.930 -25.40

celegans

chromosome:V:12386639:12386749:-1

Opposite_strand|Boundary_non-coding|K01D12.15|K01D12.15 ## K01D12.15|protein_coding|K01D12.15|Putative uncharacterized protein. [Source:UniProtKB/TrEMBL;Acc:Q27223] ## {SimpF: K01D12.15 -1 Expression_profile,WRM068aD04 -1 fosmid,WRM069cA03 -1 fosmid,WRM0611cF10 -1 fosmid,WRM0623bC10 -1 fosmid,WRM069bE06 -1 fosmid,WRM0623bE06 -1 fosmid}

block3736 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.355	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	7	-2	3arm_loop	1	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------ACUGUAC--------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------GACTGTACGATGGCGGCTAAG-------	21	1
celegans	attcttcaaatctatccgaatcatcttcaataggattgttGACTGTACGATGGCGGCTAAGaagaatc
	********************************************************************
	------------------------------------------------------------------------------	K12H4.8 K12H4.8 dcr-1
celegans	(((((((.....((.(((...((((....((((.........))))..)))).))).)).))))))).	0.440 -11.40

celegans

chromosome:III:8077692:8077759:1

Opposite_strand|Intronic_coding|K12H4.8|K12H4.8 ## K12H4.8|protein_coding|dcr-1|The dcr-1 gene encodes a bidentate ribonuclease that is homologous to E. coli RNAse III. dcr-1 is required both for RNA interference and for synthesis of small developmental RNAs. DCR-1 interacts in vivo with RDE-4, a double-stranded RNA (dsRNA) binding protein required for RNAi that interacts with trigger dsRNAs and may function to deliver dsRNAs to DCR-1 for endonucleolytic processing. [Source: WormBase] ## {SimpF: WRM0624cH05 1 fosmid,WRM066bH04 1 fosmid,WRM0625aB07 1 fosmid,WRM069aD03 1 fosmid,WRM0626aF12 1 fosmid,WRM0617bG01 1 fosmid}

block1543 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.458	no	no	0.44/0.44	25/25/0.00	0.0	0.0	1	0	1	0	3	21	3arm	2	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------UGUUGAU--------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------GTGTTGATTGTTGGGTCCAAGTTTG---	25	1
celegans	agacttctttcctcctcggagtcggtttggggacgcttttttggtacaagttcatcttctgtgttttcaattGTGTTGATTGTTGGGTCCAAGTTTGgtc
	****************************************************************************************************
celegans	.((((.(((....((.(((((((((.(((..(((((.....(((.......)))......)))))..))).....)))))).)))))...)))...))))	0.870 -19.30

celegans

chromosome:II:2613886:2613985:-1

intergenic ## {SimpF: WRM0627bE01 -1 fosmid,WRM0620bB07 -1 fosmid,WRM063cF01 -1 fosmid}

block1968 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.31/0.33	24/26/0.67	0.0	0.7	3	0	1	0	5	-5	5arm_loop_3arm	1	nd	0.46	4	3	1	na	na

		reads	miRBase family seed
seed	------AUUUGAU--------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-----GATTTGATCTTCGACAACTTATTG----------------------------	24	2
	-----GATTTGATCTTCGACAACTTATTGAT--------------------------	26	1
celegans	caatcGATTTGATCTTCGACAACTTATTGATtaagaactgatttcaaaattgattgt
	*********************************************************
celegans	((((((((((((...(((....((((.....))))...)))..))))).))))))).	0.990 -11.30

celegans

chromosome:II:11906427:11906483:-1

intergenic ## {SimpF: WRM061cG08 -1 fosmid,WRM0638cD09 -1 fosmid}

block4789 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	1	12	3arm	1	nd	0.33	4	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------GUGUCCU--------------	2	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------TGTGTCCTTGGTCGAGTTTTG-	21	2
celegans	taaaatctgaaccaaaaaactttgaaagttgaagaaatccacttcacttacaaTGTGTCCTTGGTCGAGTTTTGa
	***************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	LLC1.1 LLC1.1 tra-3
celegans	(((((..((.(((((...((.(((.(((.(((((.......)))))))).))).))....)))))))..))))).	1.000 -16.40

celegans

chromosome:IV:14439571:14439645:-1

Same_strand|Intronic_coding|LLC1.1|LLC1.1 ## LLC1.1|protein_coding|tra-3|tra-3 encodes an atypical calpain regulatory protease that lacks calcium-binding EF hand domains. during development, TRA-3 likely promotes female development in XX hermaphrodites by cleaving the membrane-associated TRA-2A protein to generate a TRA-2 peptide likely to have feminizing activity. in addition, TRA-3 is one of several proteases that mediate necrotic cell death during neurodegeneration. [Source: WormBase] ## {SimpF: WRM0622dH07 -1 fosmid,WRM0610aG11 -1 fosmid,[cgc5513]:LLC1 -1 RNAi,LLC1.1 -1 Expression_profile}

block5995 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.401	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	10	14	3arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------UCGAAUA--------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------TTCGAATAGCCCCTTTAC----------	18	1
celegans	gtttttttaaaatattgtttcaacattgccatttttaaaatgtaatttttgaaaatatgaTTCGAATAGCCCCTTTACaaaaaaaacg
	****************************************************************************************
celegans	(((((((((((...((((((.(((((....((((((((((......))))))))))))).)).))))))....))))...))))))).	0.470 -9.10

celegans

chromosome:IV:14861854:14861941:1

intergenic ## {SimpF: WRM0618dC06 1 fosmid,WRM0628aH09 1 fosmid,WRM0617bF06 1 fosmid,WRM0619cE05 1 fosmid}

block6169 [novel_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.312	no	no	0.29/0.30	20/21/1.00	0.0	0.0	7	0	1	0	1	7	3arm	1	nd	0.24	3	8	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UAUAUUU--------------	8	novel
		len	cloning frequencies
			CE1
	------------------------------------------------TTATATTTTCAGTCAAGTCGT-	21	7
	------------------------------------------------TTATATTTTCAGTCAAGTCG--	20	1
celegans	ccactgcttcattcaactgttatgtgttttaacgatttacagtttcaaTTATATTTTCAGTCAAGTCGTg
	**********************************************************************
celegans	.(((.((((......((((..(((((....(((........))).....)))))...)))).)))).)))	0.870 -9.00

celegans

chromosome:IV:16163494:16163563:1

intergenic ## {SimpF: WRM0610aE06 1 fosmid,WRM0621bE04 1 fosmid}

block1701 [novel_lenNOK_cloningOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.016	no	no	0.64/0.65	22/26/0.50	0.0	1.7	6	0	1	0	12	0	3arm	1	nd	0.23	4	6	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------AAGAUUG------------------------------	6	novel
		len	cloning frequencies
			CE1
	------------------------------------------GAAGATTGCGACGGCCGGAAGG----------------	22	3
	------------------------------------------GAAGATTGCGACGGCCGGAAGGACG-------------	25	2
	------------------------------------------GAAGATTGCGACGGCCGGAAGGACGG------------	26	1
celegans	atctttcttctctcctttcggtcctcctttctttcctccacaGAAGATTGCGACGGCCGGAAGGACGGcaacagcaaggg
	********************************************************************************
celegans	.((((.((.((.(((((((((((.((...(((((........)))))....)).))))))))))).))....)).)))).	0.850 -23.60

celegans

chromosome:II:5758477:5758556:-1

intergenic ## {SimpF: WRM0634cF07 -1 fosmid,WRM067aH11 -1 fosmid,WRM0612bF07 -1 fosmid,F10C1.3 -1 Expression_profile,WRM0639cA03 -1 fosmid,WRM0611aA03 -1 fosmid}

block7014 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.074	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	30	8	3arm	1	nd	0.15	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------GAAGAGU------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------GGAAGAGTTCTGAATTTTTT------------------------------	20	1
celegans	aggtgtaaaatttcagaaaatttgaaaatatttgtagaattcttaacaaaattttttctaatttttgGGAAGAGTTCTGAATTTTTTaaaggaatttttaatggtggagtagcgtct
	*********************************************************************************************************************
celegans	((..((...((((((((((((((.((((.((((..(((((((((..(((((.((.....)).)))))..))))))))))))).))))....)))))))).....)))))).))..))	0.870 -22.10

celegans

chromosome:V:20443233:20443349:-1

intergenic ## {SimpF: WRM067bB10 -1 fosmid}

block1325 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.110	no	no	0.42/0.47	19/24/0.50	1.5	1.0	2	0	1	0	0	16	3arm	3	nd	0.42	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UUUGGAA----------------	1	novel
seed	------------------------------------------------------------GGAAGUU-------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------TGGAAGTTTCGGTTGTTGC--	19	1
	--------------------------------------------------------CTTTGGAAGTTTCGGTTGTTGCAT	24	1
celegans	ttgcgccgatccatagatattgctgatgattcgcgtcgaggcgcttgagtctgaagCTTTGGAAGTTTCGGTTGTTGCAT
	********************************************************************************
celegans	.((((((((((((........(((...(((((((((....))))..)))))...)))..))))....)))))....))).	0.950 -23.70

celegans

chromosome:I:15061846:15061925:1

block6594 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.568	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	1	26	3arm	3	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------UUAGCGU--------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------GTTAGCGTTAAGCCATGCCAG-	21	1
celegans	gactggatgtacaatgtgtccaaagtccgtgatttctaccaacctcccagacggaagaatatgtttcttggtctctggGTTAGCGTTAAGCCATGCCAGt
	****************************************************************************************************
celegans	.((((((((...(((((.((((.((.(((.((.((((.((............)).))))......)).))).)).))))...)))))....))).)))))	0.510 -22.90

celegans

chromosome:V:8840737:8840836:-1

intergenic ## {SimpF: WRM067dE11 -1 fosmid,WRM0615bG03 -1 fosmid,WRM0620bE07 -1 fosmid,WRM0612bC01 -1 fosmid,WRM067aB04 -1 fosmid,WRM0615dE07 -1 fosmid,WRM0620cD11 -1 fosmid,WRM0615bD11 -1 fosmid,WRM0639aE12 -1 fosmid,WRM0618aE10 -1 fosmid,WRM0626cH02 -1 fosmid}

block4717 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.170	no	no	0.30/0.30	20/20/1.00	0.0	0.0	2	0	1	0	37	-4	5arm_loop	1	nd	0.45	5	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------AUUUGCU---------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------TATTTGCTTTTGTAGAACTG---------------------------------------------------	20	2
celegans	taacttgatatgagctagtagaaaatgactatattaaTATTTGCTTTTGTAGAACTGactttgtgaaattaaaatattttaagtttcactagatttttataaagttgt
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	B0513.5 B0513.5 B0513.5
celegans	((((((.(((.((((((((.((....((((.....(((((((..(((..((((......))))..)))...)))))))...))))))))))).))).))).)))))).	0.920 -18.10

celegans

chromosome:IV:13871488:13871595:-1

Same_strand|Intronic_coding|B0513.5|B0513.5 ## B0513.5|protein_coding|B0513.5|Probable proline oxidase, mitochondrial precursor (EC 1.5.99.8) (Proline dehydrogenase). [Source:UniProtKB/Swiss-Prot;Acc:O45228] ## {SimpF: WRM0638cG02 -1 fosmid,WRM0640bD11 -1 fosmid,yk248f7 -1 RNAi,WRM0616cC06 -1 fosmid}

block6602 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.151	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	4	3	5arm	4	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----GGAAGUG-------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GGGAAGTGGCAGAGTGACC--------------------------------	19	1
celegans	atggGGGAAGTGGCAGAGTGACCaagaaaaactatgcactttgtacattcggcat
	*******************************************************
celegans	......(((...((((((((....((.....))...))))))))...))).....	1.000 -12.00

celegans

chromosome:V:8853485:8853539:-1

intergenic ## {SimpF: WRM0611cD09 -1 fosmid,WRM0632cD08 -1 fosmid,WRM0639cH11 -1 fosmid,WRM0612bC01 -1 fosmid,WRM0632aF08 -1 fosmid,WRM067aB04 -1 fosmid,WRM0620cD11 -1 fosmid,WRM0628dF12 -1 fosmid,WRM0615bD11 -1 fosmid,WRM0626cH02 -1 fosmid}

block4178 [novel_lenNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.68/0.68	19/19/0.00	0.0	0.0	1	0	1	0	1	10	5arm	1	nd	0.16	1	1	1	na	na

		reads	miRBase family seed
seed	--CCCCUGC--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-TCCCCTGCCTGGGTCACCA---------------------------------------------------	19	1
celegans	gTCCCCTGCCTGGGTCACCAaatgttggcacggttgccaacagttttcgtatccaagtagtccaagggaca
	***********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	C09B9.3 C09B9.3 C09B9.3
celegans	(((((((((.(((((.((.(((((((((((....))))))))..))).))))))).)))).....))))).	1.000 -29.00

celegans

chromosome:IV:5022917:5022987:-1

Same_strand|Intronic_coding|C09B9.3|C09B9.3 ## C09B9.3|protein_coding|C09B9.3|Uncharacterized protein C09B9.3. [Source:UniProtKB/Swiss-Prot;Acc:Q17851] ## {SimpF: WRM0637cB03 -1 fosmid,WRM064cG05 -1 fosmid,WRM069dH02 -1 fosmid,yk220e2 -1 RNAi,WRM0633bA08 -1 fosmid}

block7331 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.35/0.35	23/23/1.00	0.0	0.0	1	0	1	0	31	-3	3arm_loop	1	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UCGAAUA----------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------TTCGAATATTTTTTGGGTGTGGT-------------------------------	23	1
celegans	tcttcgttgattatcacaccttaaaaacatttagcttaacgagcgcccgaagttcgTTCGAATATTTTTTGGGTGTGGTcattgtaggcaaggtgtggtgataacgatga
	**************************************************************************************************************
celegans	((.(((((.(((((((((((((...........((((.(((((((((((((((((....))))....))))))))).....)))))))))))))))))))))))))).))	0.690 -38.50

celegans

chromosome:V:12548212:12548321:1

intergenic ## {SimpF: WRM0631aC03 1 fosmid,WRM0630cG01 1 fosmid,WRM0628cD03 1 fosmid,WRM067dA01 1 fosmid,WRM0636dC04 1 fosmid,WRM0610dC02 1 fosmid,WRM0629cA07 1 fosmid,WRM062bC01 1 fosmid,WRM0614dA08 1 fosmid,WRM0630cB10 1 fosmid,WRM0619cH03 1 fosmid,WRM0626aD09 1 fosmid,WRM0612bB10 1 fosmid,WRM0617cE03 1 fosmid,WRM0640cD02 1 fosmid}

block2127 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.684	no	no	0.56/0.58	25/26/0.00	0.0	0.5	2	0	1	0	17	11	3arm	1	nd	0.38	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UGUGUGG-----------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------GTGTGTGGCGGCACGGTAACTGTTT------------------	25	1
	----------------------------------------------------------------------GTGTGTGGCGGCACGGTAACTGTTTC-----------------	26	1
celegans	cacattgaaataatccaaagcgaaactgacagttttacatttgatggtgagttgttcgatcaaatatctaGTGTGTGGCGGCACGGTAACTGTTTCggatttcggagcattgt
	*****************************************************************************************************************
celegans	.(((.((....(((((.(((((..((((...((..((((((.((((.(((.........)))..)))).))))))..))....))))...))))).)))))......)).)))	0.900 -23.50

celegans

chromosome:II:842769:842881:1

block5025 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.336	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	1	22	3arm	1	nd	0.11	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UAAAUUU------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------TTAAATTTATTGATCTCAG-	19	1
celegans	atttgagcacaaaatctataaaaattgtttcatggtgttcatttattggaactgttagcatcaacatgaaTTAAATTTATTGATCTCAGa
	******************************************************************************************
celegans	.((((((......(((.(((((..(((.((((((..((((........))))............)))))).))).))))).)))))))))	0.640 -12.14

celegans

chromosome:IV:15981135:15981224:-1

intergenic ## {SimpF: WRM0612dA05 -1 fosmid,WRM065bD04 -1 fosmid,WRM0628dG10 -1 fosmid,WRM0615dA03 -1 fosmid,WRM0636cH06 -1 fosmid}

block1017 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.797	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	19	-4	3arm_loop	1	nd	0.53	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------GACCAGC------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------GGACCAGCCAGCGGTAACT-------------------	19	1
celegans	cacattgttctcgcttccaaactgccactgatccGGACCAGCCAGCGGTAACTgaagtttttgattagttgg
	************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<--------------------------	C36B1.5.1 C36B1.5 prp-4
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<--------------------------	C36B1.5.2 C36B1.5 prp-4
celegans	((.((((.((..(((((...(((((..(((........)))...)))))....)))))....)).)))))).	0.990 -12.60

celegans

chromosome:I:8734773:8734844:1

Opposite_strand|Boundary_coding|C36B1.5.2|C36B1.5 ## C36B1.5|protein_coding|prp-4|C36B1.5 [Source:RefSeq_peptide;Acc:NP_492363] ## {SimpF: WRM0614bE10 1 fosmid,WRM0636aB08 1 fosmid,WRM0625cA05 1 fosmid,C36B1.5 1 Expression_profile}

block7625 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.125	no	no	0.54/0.54	26/26/0.00	0.0	0.0	3	0	1	0	13	8	5arm	1	nd	0.31	3	3	1	na	na

		reads	miRBase family seed
seed	--------------CGGUUUG----------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-------------GCGGTTTGAGTGGCAGGTGCGAAATT----------------------------------------------------------	26	3
celegans	tcggtgcatgaacGCGGTTTGAGTGGCAGGTGCGAAATTtagctccctggctgggggtgggaaatttagctccacatactactgaaagtcgtccgaa
	*************************************************************************************************
	-----------------------------------------------------------------------------------------------------------	ZK402.3 ZK402.3 ZK402.3
celegans	((((...((((...((((...((((...((.((.((((((.((((((.....))))))...)))))).)).))...))))))))....)))))))).	0.970 -31.70

celegans

chromosome:X:1402595:1402691:-1

Opposite_strand|Intronic_coding|ZK402.3|ZK402.3 ## ZK402.3|protein_coding|ZK402.3|ZK402.3 [Source:RefSeq_peptide;Acc:NP_508262] ## {SimpF: WRM0625bG09 -1 fosmid,WRM0633aC09 -1 fosmid,WRM0617aH09 -1 fosmid,WRM064cE08 -1 fosmid,WRM0626cF12 -1 fosmid,ZK402.3 -1 Expression_profile,WRM0629aD05 -1 fosmid,WRM0635cC09 -1 fosmid,WRM0636bA02 -1 fosmid,WRM063cH01 -1 fosmid,WRM0639aA01 -1 fosmid}

block3868 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.546	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	6	22	3arm	1	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------CUAAUAG------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------------------GCTAATAGAGAAATGAATCC------	20	1
celegans	cagaaactcacttttccttctttgatcgcttgaatttcttccatactgattctgatcacgaaatcgattggaactgatttGCTAATAGAGAAATGAATCCttttgg
	**********************************************************************************************************
	----------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................................................................	W05B2.3 W05B2.3 W05B2.3
celegans	(((((.......(((..(((((((...((..(((((..(((((...(((((.((....)).)))))..)))))..)))))))...)))))))..)))...))))).	0.630 -16.30

celegans

chromosome:III:10969311:10969416:1

intergenic ## {SimpF: WRM0627aB04 1 fosmid,WRM0624dH06 1 fosmid,WRM0640cF08 1 fosmid,WRM0639bE05 1 fosmid}

block7051 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.282	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	16	19	3arm	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------GUGGUGG----------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------------------GGTGGTGGTGTTGATGAATG----------------	20	1
celegans	gttggaattgttgaaattcgcaacgtcatcattgaagttaagcgatgggtaaagtaaagcacaatagtaataataatGGTGGTGGTGTTGATGAATGatattacataaggagc
	*****************************************************************************************************************
celegans	........(((....(((((((((..((((((((..((((.((..((.((........)).))...))..))))..))))))))..)))).)))))......)))........	0.430 -18.90

celegans

chromosome:V:1372886:1372998:1

intergenic

block4291 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.197	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	15	6	3arm	1	nd	0.24	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AGAUCUU----------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------TAGATCTTGAAGAATATCCTT---------------	21	1
celegans	actgtgtcaccgtttcaacatgttcttaaagaaactgaatttatcaacttgattatTAGATCTTGAAGAATATCCTTtgttaacttatagtg
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	B0350.2g.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2f.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2e.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2c.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2a.2 B0350.2 unc-44
celegans	((((((.....(((.(((.((((((((.((((..((((....(((.....)))..)))).)))).))))))))...)))..))).)))))).	0.980 -14.60

celegans

chromosome:IV:5968274:5968365:-1

Opposite_strand|Boundary_non-coding|B0350.2c.1|B0350.2 ## Opposite_strand|Intronic_non-coding|B0350.2f.2|B0350.2 ## B0350.2|protein_coding|unc-44|The unc-44 gene encodes an ankyrin-like protein required for proper sex myoblast and axonal guidance during development. [Source: WormBase] ## {SimpF: WRM0617aD01 -1 fosmid,WRM069dG09 -1 fosmid,WRM0615cF12 -1 fosmid,WRM0641bE08 -1 fosmid,WRM0632bG01 -1 fosmid,WRM0631dH08 -1 fosmid,WRM065aA10 -1 fosmid,WRM0612dE02 -1 fosmid}

block4243 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.914	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	12	10	3arm	1	nd	0.52	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UCCCUGU-------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------GTCCCTGTATGCGCCTTTGCT------------	21	1
celegans	atacgtttgttgcctggcgacctcactgactggaccgctccagattttGTCCCTGTATGCGCCTTTGCTgaaaagaaagta
	*********************************************************************************
	---------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------	ZK616.5 ZK616.5 ZK616.5
celegans	.(((.(((...((..((((....((..(((((((....))))......)))..))....))))...))....)))...)))	0.610 -14.80

celegans

chromosome:IV:5392266:5392346:-1

Opposite_strand|Boundary_coding|ZK616.5|ZK616.5 ## ZK616.5|protein_coding|ZK616.5|ZK616.5 [Source:RefSeq_peptide;Acc:NP_500800] ## {SimpF: WRM0621dF11 -1 fosmid,WRM0612dE10 -1 fosmid,WRM066cH08 -1 fosmid,WRM0636bF04 -1 fosmid,WRM0635cB02 -1 fosmid,WRM0614bB03 -1 fosmid,WRM0621cG07 -1 fosmid}

block4851 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	3	26	3arm	1	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------------------UGGUUGU---------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------------------------------TTGGTTGTTGTTTTTTTTCG---	20	1
celegans	agtcgaaaatggcttcgattttttcgcatttcttttaatatttcttctgtttcacgtactccattttagattttgaataccattatagttgtTTGGTTGTTGTTTTTTTTCGtct
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	Y57G11C.22a Y57G11C.22 Y57G11C.22
celegans	((.((((((.(((..(((((.....(((...((..((((..(((.((((.................))))....)))....)))).)).)))..)))))..)))..)))))).))	0.490 -11.53

celegans

chromosome:IV:14847763:14847877:-1

Opposite_strand|Intronic_coding|Y57G11C.22a|Y57G11C.22 ## Y57G11C.22|protein_coding|Y57G11C.22|Y57G11C.22a [Source:RefSeq_peptide;Acc:NP_001041046] ## {Repeats: dust 45288 45295 0 class=dust} ## {SimpF: CEOP4661 -1 Operon,WRM062cD10 -1 fosmid,WRM0618dC06 -1 fosmid,WRM0629dF03 -1 fosmid,WRM0626cH10 -1 fosmid}

block5826 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.402	no	no	0.28/0.28	25/25/0.00	0.0	0.0	2	0	1	0	7	0	5arm	2	nd	0.32	4	2	1	na	na

		reads	miRBase family seed
seed	--------AUUUGUG--------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-------GATTTGTGATTGTAAACGAAAATTG---------------------------------	25	2
celegans	ttgccacGATTTGTGATTGTAAACGAAAATTGatagtaatgaatgtttttcacactgattgtcga
	*****************************************************************
celegans	.....(((((((((((....(((((...((((....))))...))))).)))))..))))))...	0.800 -9.70

celegans

chromosome:IV:13433997:13434061:1

intergenic

block7564 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.284	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	14	-1	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UGUUGGU----------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------GTGTTGGTGGGGTGTTAAATAG--------------	22	1
celegans	attcgtcgaaaaagtgtgcgttttcatcatataaatagaaaaaaagaaagagagagagtaatatGTGTTGGTGGGGTGTTAAATAGcacaagatacgaat
	****************************************************************************************************
	........................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y113G7B.23 Y113G7B.23 psa-1
celegans	((((((........(((((.((..((((.(((.((((............................)))).))).))))..))...)))))....))))))	0.650 -13.19

celegans

chromosome:V:20234565:20234664:1

Opposite_strand|Boundary_non-coding|Y113G7B.23|Y113G7B.23 ## Y113G7B.23|protein_coding|psa-1|psa-1 encodes an ortholog of SWI3, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling. psa-1 is probably required during mitosis of the T cells for asymmetric cell division, and in addition, is required for embryonic and larval development, as well as normal levels of fertility. psa-1 exhibits strong genetic interactions with lin-35/Rb, as psa-1 larval lethality and sterility at 20 degrees C are greatly enhanced in lin-35.psa-1 double mutants. [Source: WormBase] ## {SimpF: CEOP5508 -1 Operon}

block3364 [novel_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.571	no	no	0.50/0.64	21/24/1.00	0.0 0.0	0.0 0.0	10 1	0 0	1 1	0 0	14 5	1 8	3arm 3arm	1 1	nd nd	0.41 0.50	4 5	12	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------CACCUCG----------------------------	11	novel
seed	-----------------------------------------------------------ACAACUG---------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------GCACCTCGACAACTGGCAAGGC--------------	22	10
	----------------------------------------------------------GACAACTGGCAAGGCAAAAACAGG-----	24	1
	---------------------------------------------------GCACCTCGACAACTGGCAAGG---------------	21	1
celegans	tcagcttctcaaatgctatttcagaatctgacatttgcgcttaaaattttcGCACCTCGACAACTGGCAAGGCaaaaacaggactga
	***************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........................	F53A2.6.2 F53A2.6 ife-1
celegans	((((.((((....((((...((((....(((....((((...........))))..)))....))))...)))).....))))))))	0.530 -13.20

celegans

chromosome:III:13343435:13343521:-1

Opposite_strand|Boundary_non-coding|F53A2.6.2|F53A2.6 ## F53A2.6|protein_coding|ife-1|The ife-1 gene encodes one of five C. elegans homologs of the mRNA cap-binding protein eIF4E. it is specifically required for spermatogenesis, and is expressed in P granules. [Source: WormBase] ## {SimpF: CEOP3784 -1 Operon,WRM0629bC04 -1 fosmid,F53A2.6 -1 Expression_profile}

block861 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.499	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	1	5	3arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------UUCCAAG------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------GTTCCAAGTGCAGTCTCGG-	19	1
celegans	ttcgaaatcggcgataagagctttcttcctcctggtagGTTCCAAGTGCAGTCTCGGa
	**********************************************************
celegans	(((((.....(((....((((((....((....)).))))))....)))....)))))	1.000 -12.80

celegans

chromosome:I:5453565:5453622:1

intergenic ## {SimpF: WRM062cH03 1 fosmid,WRM0633aG08 1 fosmid}

block3889 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.052	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	2	20	5arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	---AUGAUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GATGATGGTGGTGGTGGCT----------------------------------------------------------------	19	1
celegans	tgGATGATGGTGGTGGTGGCTgcaatttttctagttgaaaaaaaacttttcctagttaaaaattggccgtttccagcttaattta
	*************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------------------------------------------	C24H11.7 C24H11.7 gbf-1
celegans	(((((...(((((..(((((..((((((((((((..(((((.....)))))))))..)))))))))))))..))).))..)))))	0.970 -18.40

celegans

chromosome:III:11754332:11754416:1

sblock6 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.412	no	no	0.50/0.50	26/26/0.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	0 23	13 -4	5arm 3arm_loop	1 1	nd nd	0.38 0.35	6 4	2	1	0	-20

		reads	miRBase family seed
seed	--------------------------------------------------UUGAAGU-----------------------------------------	1	novel
seed	-UCUUCUU------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	GTCTTCTTATGATGGCTGCCTCGATG------------------------------------------------------------------------	26	1
	-------------------------------------------------GTTGAAGTGGAAGAGTCTGAGTTCGG-----------------------	26	1
celegans	GTCTTCTTATGATGGCTGCCTCGATGggcgatttcgcttgtggttcattGTTGAAGTGGAAGAGTCTGAGTTCGGggtgtcttagttgcacgttgtag
	**************************************************************************************************
celegans	.......((..(((((.(((((((.((((..((((((((..............))))))))..))))....))))))).........)).)))..)).	0.810 -25.44

celegans

chromosome:I:2149911:2150008:1

intergenic

sblock1 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.298	no	no	0.38/0.42	21/26/0.33	0.0 0.0	0.5 0.0	2 1	0 0	1 1	0 0	3 7	1 5	5arm 3arm	1 1	nd nd	0.38 0.43	4 6	3	1	1	-4

		reads	miRBase family seed
seed	----ACUUUGA--------------------------------------------------------	2	novel
seed	----------------------------------------AGUUUUU--------------------	1	novel
		len	cloning frequencies
			CE1
	---GACTTTGATGGTGCCATTATAACTCC--------------------------------------	26	1
	---------------------------------------GAGTTTTTGTTTGAACCTTGG-------	21	1
	---GACTTTGATGGTGCCATTATAACTC---------------------------------------	25	1
celegans	tttGACTTTGATGGTGCCATTATAACTCCgttctcgtttGAGTTTTTGTTTGAACCTTGGagacaag
	*******************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<....................................................	C43E11.5 C43E11.5 C43E11.5
celegans	.(((.((..((.(((..((....(((((((....))...)))))......)).)))))..)).))).	0.450 -11.40

celegans

chromosome:I:4236988:4237054:-1

Opposite_strand|Boundary_non-coding|C43E11.5|C43E11.5 ## intergenic ## C43E11.5|protein_coding|C43E11.5|C43E11.5 [Source:RefSeq_peptide;Acc:NP_491335] ## {SimpF: WRM066aD06 -1 fosmid,CEOP1156 -1 Operon,WRM0631dH05 -1 fosmid,WRM0634bF08 -1 fosmid}

block3954 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.606	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	6	20	5arm	4	nd	0.35	2	1	1	na	na

		reads	miRBase family seed
seed	-------UAUGAGC------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GTATGAGCTGGAGCACCGAG------------------------------------------------------------------------	20	1
celegans	ccattgGTATGAGCTGGAGCACCGAGttgttgaccatgttgaccatgtagatggtaagcggcagcggatgacatcggagcagtggcagatgacggcgg
	**************************************************************************************************
celegans	((.(((.(((..((((..((.((((..(((((.((.((((((((((....)))))...)))))..)).))))))))).))..))))..))).))).))	0.920 -27.60

celegans

chromosome:III:13236203:13236300:1

intergenic ## {SimpF: WRM066cD02 1 fosmid,WRM064bH07 1 fosmid,WRM0621dD01 1 fosmid,Y43F4A.2 1 Expression_profile,WRM0620dB10 1 fosmid}

block7644 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	17	3	5arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------------------GAUAUGU------------------------------------------------------------------------------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	-----------------TGATATGTTGTTGATGCC--------------------------------------------------------------------------	18	1
celegans	gtgaaatacgatgctgaTGATATGTTGTTGATGCCgtaattattatcaaaatacttctaatctctatcaataccaacatccacaacatatcacaccatctatatccaca
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	R09H3.1 R09H3.1 R09H3.1
celegans	(((..(((.((((.((.(((((((((((.((((..(((................................)))...)))).))))))))))))).)))))))...))).	0.860 -24.45

celegans

chromosome:X:1659376:1659484:-1

Same_strand|Intronic_coding|R09H3.1|R09H3.1 ## R09H3.1|protein_coding|R09H3.1|R09H3.1 [Source:RefSeq_peptide;Acc:NP_508305] ## {SimpF: WRM066aA09 -1 fosmid,WRM0626bE10 -1 fosmid,WRM0641aB04 -1 fosmid,WRM0614bA02 -1 fosmid}

block4165 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.603	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	4	15	3arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUGGGCU--------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------TTTGGGCTGATTTGTCGG----	18	1
celegans	ttttttaacaatgatgtttcaaaatgtttttatttggaagttaaattaaaaataccacTTTGGGCTGATTTGTCGGaaag
	********************************************************************************
celegans	.((((..((((....((.(((((.((((((((.((........)).))))))))....)))))))....))))..)))).	0.670 -10.40

celegans

chromosome:IV:4888151:4888230:-1

intergenic ## {SimpF: WRM0617aF03 -1 fosmid,WRM0641bG05 -1 fosmid,WRM0629bF04 -1 fosmid,WRM0631dA02 -1 fosmid,WRM061cE11 -1 fosmid,WRM0629bB01 -1 fosmid}

block5212 [novel_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	33	1	3arm	25	nd	0.00	0	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AAAUAUA------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------CAAATATAGTGACTCTGGCCGTT---------------------------------	23	1
celegans	gtgcatttctgagtcactatttttggtgaacggccagagtcactatatttggtgaacggccCAAATATAGTGACTCTGGCCGTTcaccaagaacagtgactgtctcggtagacgtat
	*********************************************************************************************************************
celegans	((((.(((((((((((((.(((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))).))))))....)))).))).))))	0.740 -73.30

celegans

chromosome:IV:448804:448920:1

intergenic

block6383 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.393	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	19	-1	3arm	2	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------AACUGAU--------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------GAACTGATCGAGGCAATATGC-------------------	21	1
celegans	gcctgtggtacggtagtgcgcggctggattggatgggtttgaGAACTGATCGAGGCAATATGCatctgtgaagccagagagt
	**********************************************************************************
celegans	((((.((((((((..(((((..(((......(((.((((....)))).)))..)))....)))))))))...)))).)).))	0.890 -21.40

celegans

chromosome:V:2012088:2012169:-1

intergenic ## {SimpF: F59A7.7 -1 Expression_profile,WRM0641dA06 -1 fosmid,WRM0615aD05 -1 fosmid,WRM0613dD02 -1 fosmid}

block7322 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.619	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	24	10	3arm	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------CUUCACA----------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------TCTTCACAAATAGCCTTC------------------------	18	1
celegans	tgggataacggagtgtcgttcgatgttttcttttgtgcgttgaaataaatttataagtttagaatTCTTCACAAATAGCCTTCagaaagtgcttcagttgtaaatcg
	***********************************************************************************************************
celegans	.((.(((((((((((...(((((.(((....((((((....(((.((((((....))))))...)))..)))))).)))..)).)))..)))))).)))))...)).	0.870 -17.90

celegans

chromosome:V:12400862:12400968:1

intergenic ## {SimpF: WRM069bE06 1 fosmid,WRM0627aF01 1 fosmid,WRM0623bE06 1 fosmid,WRM069cA03 1 fosmid,WRM0636aG02 1 fosmid,WRM0614cG10 1 fosmid,WRM0623bC10 1 fosmid}

block3287 [novel_lenNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.490	no	no	0.30/0.35	20/26/0.50	4.0	1.0	2	0	1	0	6	13	3arm	2	nd	0.45	4	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AUACCAA--------------------------	1	novel
seed	---------------------------------------------------------------------UUAUGAA------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------GATACCAAGTTATGAATAACGCCAAT--------	26	1
	--------------------------------------------------------------------GTTATGAATAACGCCAATTT------	20	1
celegans	ttcttggcggcgccctctcgtttcttcttcttttctgacgtttgctgcatttgtcctattGATACCAAGTTATGAATAACGCCAATTTgaggaa
	**********************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................	Y66D12A.11 Y66D12A.11 Y66D12A.11
celegans	(((((((.((((.....((((..(((..((......((((..((...))..)))).....))....)))..))))....))))...))))))).	0.540 -14.80

celegans

chromosome:III:11563383:11563476:-1

block4148 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.159	no	no	0.36/0.44	22/25/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	21 11	-4 9	3arm_loop 3arm	1 1	nd nd	0.36 0.32	3 3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CAAUUCC--------------------------------------	1	novel
seed	------------------------------------------------------------UAAUCAG-------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------GCAATTCCGTAGTGTAATCAGCCAT---------------------	25	1
	-----------------------------------------------------------GTAATCAGCCATATTTGTATGC-----------	22	1
celegans	ggttcgtctgttgctgtactctttgtagttgactcactaccatcaaGCAATTCCGTAGTGTAATCAGCCATATTTGTATGCacaaatttgct
	********************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..........................	F29B9.7 F29B9.7 F29B9.7
celegans	(((..((.((.(((.((((....(((.(((((..((((((....((....))..))))))...))))).)))...))))))))).))..)))	0.990 -19.10

celegans

chromosome:IV:4649843:4649934:-1

Opposite_strand|Boundary_non-coding|F29B9.7|F29B9.7 ## F29B9.7|protein_coding|F29B9.7|F29B9.7 [Source:RefSeq_peptide;Acc:NP_500603] ## {SimpF: WRM0637aB09 -1 fosmid,WRM0629aB05 -1 fosmid,WRM0639aG12 -1 fosmid,WRM0615bH02 -1 fosmid,F29B9.7 -1 Expression_profile,WRM068dB06 -1 fosmid,WRM0616dA11 -1 fosmid,WRM0618aF09 -1 fosmid}

block8117 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.479	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	6	5arm	2	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-------CUUGGAG--------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GCTTGGAGAATGGTCACAGCT-------------------------------------------	21	1
celegans	atgattGCTTGGAGAATGGTCACAGCTacgggaccatcttttgtgagtgacatgttcttttcctgatgat
	**********************************************************************
celegans	((.(((....(((((((((((((...(((((((.....))))))).))))).))))))))....))).))	0.970 -14.00

celegans

chromosome:X:264516:264585:1

intergenic

block87 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.65/0.65	20/20/1.00	0.0	0.0	1	0	1	0	4	8	3arm	1	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------GGUGUGC----------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------CGGTGTGCTCGAGGGCTTGT----	20	1
celegans	gagtcgacgacgaatttgaagaaattcgccgagcaagattcaacatcttgatCGGTGTGCTCGAGGGCTTGTcact
	****************************************************************************
celegans	.(((.(((((....((((.((.....((((((.((((((.....)))))).))))))..))))))...))))))))	0.550 -22.90

celegans

chromosome:I:2150748:2150823:-1

intergenic

block2211 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.120	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	10	13	3arm	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------UAAAUUU------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------------------GTAAATTTGAACAACGTGTCCG----------	22	1
celegans	gcggatttggcggatttgccggatttgccggaatttcctgatttgccataagatcactttttcGTAAATTTGAACAACGTGTCCGataatttgta
	***********************************************************************************************
celegans	(((((((...((((((((.((((((((.(((((.....((((((......))))))...)))))))))))))..)))...)))))..))))))).	0.660 -24.10

celegans

chromosome:II:3395480:3395574:1

intergenic ## {SimpF: WRM0636cD03 1 fosmid,WRM068bB05 1 fosmid,WRM0610dH04 1 fosmid,WRM069bC03 1 fosmid,WRM0631bH09 1 fosmid,WRM0610cF02 1 fosmid,WRM0622bA01 1 fosmid}

block7635 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.453	no	no	0.23/0.23	22/22/1.00	0.0	0.0	1	0	1	0	0	13	5arm	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	-UUUAUGA--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	GTTTATGAAGACGATTATTATT------------------------------------------------------------	22	1
celegans	GTTTATGAAGACGATTATTATTatgaagaactggcgaatactattatgaagaaccggccaacgagtagtggtcgagtggacg
	**********************************************************************************
celegans	((((((...(((.((((((............((((.....................))))...)))))).)))..)))))).	0.810 -15.06

celegans

chromosome:X:1643930:1644011:-1

intergenic ## {Repeats: trf 37 47 0 class=trf} ## {SimpF: WRM0619cB06 -1 fosmid,WRM0637cC01 -1 fosmid,WRM0635bH10 -1 fosmid,WRM0634dF02 -1 fosmid,WRM061aG07 -1 fosmid,WRM0626bE10 -1 fosmid,WRM0626cF12 -1 fosmid,WRM0624cB10 -1 fosmid,WRM0641aB04 -1 fosmid,WRM0614bA02 -1 fosmid}

block911 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.352	no	no	0.33/0.33	24/24/1.00	0.0	0.0	1	0	1	0	16	-1	5arm_loop	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------UCUUUGA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------GTCTTTGATTGACAAGATATTTGG------------------------------------------------	24	1
celegans	cgtggcatgtgcttgaGTCTTTGATTGACAAGATATTTGGtgatacagatatgaagaatcatcatgataattgcaaaaatgagcccga
	****************************************************************************************
celegans	((.(((...(((....(((..(((.(((....(((((((......)))))))......)))))).)))....))).......))))).	0.580 -16.50

celegans

chromosome:I:6145045:6145132:1

intergenic ## {SimpF: F56F4.7 1 Expression_profile,WRM0611dF11 1 fosmid,WRM0613cG12 1 fosmid,WRM0628dG06 1 fosmid,WRM0621bH03 1 fosmid,WRM065bH05 1 fosmid,WRM068cH02 1 fosmid,WRM0624dG10 1 fosmid}

block4896 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.639	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	14	26	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------AACAACG---------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------------TAACAACGGTTTTCAAAATTC--------------	21	1
celegans	ttgaaaaaacaattttaaaatgttctcacatgtttcaactgtttcacgtagttttttttaagtgcaaagattcagcggaggctggTAACAACGGTTTTCAAAATTCtaactttattcaat
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y40H7A.6 Y40H7A.6 sra-30
celegans	(((((.(((.((((((((((((((....((.(((((..(((..((..(((.((......)).)))...))..)))..))))))).....)))).)))).)))))).....))).))))).	0.530 -17.20

celegans

chromosome:IV:15193316:15193435:-1

Same_strand|Intronic_coding|Y40H7A.6|Y40H7A.6 ## Y40H7A.6|protein_coding|sra-30|Serpentine Receptor, class A (alpha) family member (sra-30) [Source:RefSeq_peptide;Acc:NP_502833] ## {SimpF: WRM0634aD03 -1 fosmid,WRM0632aH08 -1 fosmid}

block7405 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	32	0	5arm	3	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------UUGUUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------GTTGTTGGGAGAGTTATTGGGATC-----------------------------------------------------------	24	1
celegans	gacggcagtgtagatggcattcatcttgaggtGTTGTTGGGAGAGTTATTGGGATCgatttgatcgtgatttgaatgacaatttcctccttatttataccaactatttgtcatca
	*******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................................................................	ZC412.7 ZC412.7 nspa-3
celegans	((.(((((.((((.(((.((.......((((.(((((((...(((((((...((((.....)))))))))))...)))))))..)))).......)).))).))))))))).)).	0.430 -29.54

celegans

chromosome:V:14880494:14880608:1

intergenic ## {SimpF: WRM0625cE01 1 fosmid,WRM0623dF08 1 fosmid,WRM0639cE11 1 fosmid,WRM0613bG05 1 fosmid}

sblock48 [novel_cloningOK_multiarm_DicerNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.039	no	no	0.33/0.43	21/25/0.80	0.0 0.0	1.3 0.0	3 2	0 0	1 1	0 0	6 25	15 0	5arm 3arm	1 1	nd nd	0.40 0.22	4 2	5	1	-15	-17

		reads	miRBase family seed
seed	-------AUUUCUU--------------------------------------------------------------------------------------	3	novel
seed	-----------------------------------------------------UUGAAAA----------------------------------------	2	novel
		len	cloning frequencies
			CE1
	------TATTTCTTCTTTGTAGAGGAG-------------------------------------------------------------------------	21	2
	----------------------------------------------------ATTGAAAATTGGTGTAGCACCGC-------------------------	23	2
	------TATTTCTTCTTTGTAGAGGAGGTCT---------------------------------------------------------------------	25	1
celegans	gtttatTATTTCTTCTTTGTAGAGGAGGTCTattacaattttttattattttATTGAAAATTGGTGTAGCACCGCtccacttttgaatttttaatgtaac
	****************************************************************************************************
celegans	((((((((....(((...((.(((..(((((((..((((((((.((......)).))))))))..)))).))).))).))....)))....))))).)))	0.680 -19.40

celegans

chromosome:MtDNA:3596:3695:1

intergenic

block4190 [novel_lenNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.46/0.46	26/26/0.00	0.0	0.0	3	0	1	0	4	6	5arm	2	nd	0.23	3	3	1	na	na

		reads	miRBase family seed
seed	-----UUUGCAA------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	----GTTTGCAACGTTCATCGCTTCAGTTG------------------------------------------------------	26	3
celegans	tattGTTTGCAACGTTCATCGCTTCAGTTGattagcttgctaaacaattgctgcttgattgagaactgatgatttgtgaacaat
	************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<......................................................................	C02B10.6 C02B10.6 C02B10.6
celegans	.((((((..(((...((((((.(((((((((.((((.............)))).)))))))))...)))))).)))..))))))	0.990 -25.12

celegans

chromosome:IV:5070856:5070939:-1

Opposite_strand|Boundary_non-coding|C02B10.6|C02B10.6 ## C02B10.6|protein_coding|C02B10.6|C02B10.6 [Source:RefSeq_peptide;Acc:NP_500718] ## {SimpF: WRM0613bC11 -1 fosmid,WRM0617bD02 -1 fosmid,WRM0619bD05 -1 fosmid,WRM068bA09 -1 fosmid,WRM0639aG02 -1 fosmid,WRM0639aC05 -1 fosmid,WRM0612bE11 -1 fosmid,WRM061bH04 -1 fosmid,WRM0613bB12 -1 fosmid}

block6126 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.035	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	19	4	5arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------UGAAGUA-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------TTGAAGTAGGATTTTGAAAT-----------------------------------------------------	20	1
celegans	taaatttagcattttttgtTTGAAGTAGGATTTTGAAATaaattaaatattggctttcatttcttgaatcagttttagaaaaatgtaaattt
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	Y105C5B.7 Y105C5B.7 Y105C5B.7
celegans	.((((((.(((((((((..((((..(((((...(((((..(((.....)))...)))))..)))))..)))).....)))))))))))))))	1.000 -17.20

celegans

chromosome:IV:15918175:15918266:1

Opposite_strand|Intronic_coding|Y105C5B.7|Y105C5B.7 ## Y105C5B.7|protein_coding|Y105C5B.7|Y105C5B.7 [Source:RefSeq_peptide;Acc:NP_502896] ## {SimpF: WRM0633cH08 1 fosmid}

block4660 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.812	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	14	-2	5arm_loop	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	---------------AUAAACU----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------GATAAACTCTTGAATTGGCTG---------------------------------------------	21	1
celegans	tgttcggacatctcGATAAACTCTTGAATTGGCTGaaacgtcggctcacgggtgaaatatggagcactgctgccgctgct
	********************************************************************************
celegans	.((.(((.((.(((.(((.((((.(((.(((((......))))).))).))))....))).)))...))...)))..)).	0.940 -18.10

celegans

chromosome:IV:12640707:12640786:-1

intergenic ## {SimpF: WRM068bH03 -1 fosmid,WRM064cA08 -1 fosmid}

block4922 [novel_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	22	-3	3arm_loop	1	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------UUGUUUG----------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------TTTGTTTGGTGGCCTTATTG----------------------	20	1
celegans	tgtgatacatttgctgcattaatgagagtaagacaaTTTGTTTGGTGGCCTTATTGatgttagtgaaatatgccacat
	******************************************************************************
celegans	((((.((..((..(((((((((((((.((.((((.....))))....))))))))))))).))..))...)).)))).	1.000 -21.00

celegans

chromosome:IV:15322798:15322875:-1

intergenic

block5544 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.089	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	2	19	5arm	1	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	---AUAAUGU----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--TATAATGTTGCTTACTTTG-----------------------------------------------------------------	19	1
celegans	gtTATAATGTTGCTTACTTTGagttttcatcctttgtttctgctgatcgaaaattgaagtactcagatttgcggagcatgagaaca
	**************************************************************************************
	----------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	R13H7.2a R13H7.2 R13H7.2
	----------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	R13H7.2b R13H7.2 R13H7.2
	----------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	R13H7.2c R13H7.2 R13H7.2
celegans	(((...(((((((....((((((((((((...((((..((....)).))))...))))).)))))))...)))..))))...))).	0.950 -19.50

celegans

chromosome:IV:6849081:6849166:1

Opposite_strand|Boundary_coding|R13H7.2c|R13H7.2 ## R13H7.2|protein_coding|R13H7.2|R13H7.2a [Source:RefSeq_peptide;Acc:NP_741433] ## {SimpF: WRM0618cC12 1 fosmid,WRM0613bD04 1 fosmid,R13H7.2 1 Expression_profile}

block6277 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.711	no	no	0.24/0.24	21/21/1.00	0.0	0.0	1	0	1	0	3	17	3arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------UAGAGUA----------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------GTAGAGTATTATTTTGAAACT---	21	1
celegans	accgtgactgagataacaccatagagtactgtatcgaacataacaggaccttcggacatcattttatGTAGAGTATTATTTTGAAACTgta
	*******************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................	C30H6.2 C30H6.2 tag-141
celegans	((.((...((((((((.((((((((((..(((.(((((............))))))))..))))))))....)).))))))))..)).)).	0.970 -13.10

celegans

chromosome:IV:17366351:17366441:1

intergenic ## {SimpF: WRM0619bA10 1 fosmid,WRM0637cF11 1 fosmid,WRM0629dG02 1 fosmid,WRM0628dA12 1 fosmid,WRM0613aG09 1 fosmid,WRM0632cE07 1 fosmid,WRM0618bE06 1 fosmid}

block5412 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.015	no	no	0.58/0.58	26/26/0.00	0.0	0.0	1	0	1	0	8	16	5arm	2	nd	0.23	4	1	1	na	na

		reads	miRBase family seed
seed	---------CAGAAUG------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------GCAGAATGGGCCATGGCGACTTGTTG------------------------------------------------------------------------------------	26	1
celegans	cagattggGCAGAATGGGCCATGGCGACTTGTTGaaggagttatgagaactcgcagtgaagattatgacaaaaccttctcaatttatagtagccttcttatctctgtcctagatctga
	**********************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<.....................................................................................................	Y59E9AR.7 Y59E9AR.7 Y59E9AR.7
celegans	((((((((((((((((((....(((.(((.((((((((.(((((((..((.....)).....)))))))....)))..)))))....))).)))..))))).)))))))..)))))).	0.960 -35.20

celegans

chromosome:IV:5241762:5241879:1

block4118 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.044	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	7	6	3arm	2	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------AUGACGU--------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------GATGACGTCGACGGCTCGGGC-------	21	1
celegans	gaaggatcttcgccttctccacatcgacgggcttcgcgtcttttggctccGATGACGTCGACGGCTCGGGCtccttct
	******************************************************************************
celegans	((((((.....((((...((...((((((....(((.(((....)))..)))...)))))).))...)))))))))).	0.650 -27.30

celegans

chromosome:IV:4179765:4179842:-1

intergenic ## {SimpF: WRM0636dC01 -1 fosmid}

block8528 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.275	no	no	0.22/0.22	18/18/0.00	0.0	0.0	1	0	1	0	17	8	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------CUUUGAU---------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------TCTTTGATTGAGTTTTTT-----------------	18	1
celegans	ctactttccacagaatagtgtgaatataaatgccgaatcatttttctggagtttccaacttgactttcacttccgaTCTTTGATTGAGTTTTTTctacattatttcgagta
	***************************************************************************************************************
celegans	.(((((......((((((((((((...((((....(((((....((.(((((................))))).))....)))))..)))).))).))))))))).)))))	0.880 -16.49

celegans

chromosome:X:12962244:12962354:1

intergenic ## {SimpF: WRM0641aC06 1 fosmid,WRM0617aF07 1 fosmid,WRM0613bE12 1 fosmid}

block5089 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.721	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	8	16	3arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UUGCACC--------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------GTTGCACCACGAGATGTGTG--------	20	1
celegans	tggaaccggggcgttcgctgggacctggacgacgggaagcggagcagcttcttcttccttctttGTTGCACCACGAGATGTGTGaaggttct
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	K03D3.13 K03D3.13 rac-3
celegans	.((((((...(((((((.(((......(((((.((((((.((((....)))).))))))...)))))...)))))).)))).....))))))	0.410 -26.70

celegans

chromosome:IV:16317575:16317666:-1

Opposite_strand|Intronic_non-coding|K03D3.13|K03D3.13 ## K03D3.13|pseudogene|rac-3| ## {SimpF: WRM0633dF01 -1 fosmid,WRM0639bB12 -1 fosmid,WRM0621bE04 -1 fosmid,WRM0641bC05 -1 fosmid,K03D3.6 -1 Expression_profile}

block8093 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.258	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	16	6	5arm	1	nd	0.16	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------UAGAGGA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------GTAGAGGAACAAAGAGTGG-------------------------------------------------------------------------------------	19	1
celegans	acgattgaaatcctaaGTAGAGGAACAAAGAGTGGaaagacaactactatctaattataaattattttcattcgtcatttcgattttttgtctttattgcctgataattggaaaagattg
	************************************************************************************************************************
celegans	.(((((....(((..(((((((..(((((((((.(((((((................................))).)))).))))))))))))))))...........)))...)))))	0.530 -19.47

celegans

chromosome:X:17253869:17253988:-1

intergenic ## {SimpF: WRM0627dB01 -1 fosmid,WRM0639dB09 -1 fosmid,WRM0611aD03 -1 fosmid}

block2378 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.970	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	22	15	5arm	1	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------UGAAUAA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------GTGAATAAGTGATGACAG-----------------------------------------------------------------------------	18	1
celegans	gtctagtgaaggcgtaaaagtgGTGAATAAGTGATGACAGctttttcttcttgtctgattgatttgattcgaattgttgtaaagaccatctgccatctgaacttgtcgaggtgtgac
	*********************************************************************************************************************
celegans	(((.......((((....((((((..((..((....(((((..(((..((..(((.....)))..))...)))..)))))....)).))..)))).)).....)))).......)))	0.760 -20.44

celegans

chromosome:II:7493774:7493890:1

intergenic ## {SimpF: WRM0619cF06 1 fosmid,WRM0613dH09 1 fosmid,WRM0621bG05 1 fosmid,WRM0621dE08 1 fosmid,WRM0611cE04 1 fosmid,WRM0633aE12 1 fosmid}

block8090 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.150	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	7	4	5arm	2	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	--------UUGACCG----------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------GTTGACCGCCCAGTATAGCG----------------------------------	20	1
celegans	tctctctGTTGACCGCCCAGTATAGCGggttggggagccgcactggggtcaagccggaaga
	*************************************************************
celegans	(((.(((((((((..((((((...((((.((...)).)))))))))))))))..)))))))	1.000 -23.00

celegans

chromosome:X:17129332:17129392:-1

intergenic ## {SimpF: WRM068dD10 -1 fosmid,WRM0624aD11 -1 fosmid,WRM0639cF01 -1 fosmid,WRM0638bF05 -1 fosmid,WRM0629cB04 -1 fosmid,WRM0640cF10 -1 fosmid,WRM062cE08 -1 fosmid,WRM0614dG04 -1 fosmid}

block6465 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.678	no	no	0.50/0.57	22/26/0.33	0.0	0.0	4	0	1	0	3	14	5arm	2	nd	0.38	4	6	1	na	na

		reads	miRBase family seed
seed	----CAUCGAC-------------------------------------------------------------------------------------	5	novel
seed	---CCAUCGA--------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---CCATCGACACCAACTTGACCGTTGTT-------------------------------------------------------------------	26	4
	--CCCATCGACACCAACTTGACCGT-----------------------------------------------------------------------	23	1
	---CCATCGACACCAACTTGACCGT-----------------------------------------------------------------------	22	1
celegans	ttcCCATCGACACCAACTTGACCGTTGTTtttggttttttgaaacgagaattcaataaggatttaaaattggtttctgttagtttttttttggaaa
	************************************************************************************************
celegans	((((....((.((.(((..(((((..(((((..((((((((((.......)))))..)))))..))))))))))...))).)).)).....)))).	0.550 -13.80

celegans

chromosome:V:5586871:5586966:-1

intergenic ## {SimpF: WRM0625aB06 -1 fosmid,WRM0616aH11 -1 fosmid,WRM0631cD06 -1 fosmid,WRM0624bF07 -1 fosmid,WRM0628dG08 -1 fosmid}

block5805 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.051	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	17	6	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	------------------CUUGAAG---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------GCTTGAAGTTTCCGACATTCCAATT----------------------------------------------------------------	25	1
celegans	tcacaacaatttttgtcGCTTGAAGTTTCCGACATTCCAATTgatcgataagattttgacgaatccgagtagggaataaatcgatttttgacaaaagtgattgtgg
	**********************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................................................	C36H8.1 C36H8.1 C36H8.1
celegans	.(((((..((((((((((.((((.((((((...((((..(((..((((.......))))..)))..)))).))))))...))))....))))))))))..))))).	0.710 -25.40

celegans

chromosome:IV:12744674:12744779:1

Opposite_strand|Boundary_non-coding|C36H8.1|C36H8.1 ## C36H8.1|protein_coding|C36H8.1|C36H8.1 [Source:RefSeq_peptide;Acc:NP_502434] ## {SimpF: WRM063bG11 1 fosmid,WRM0635bD10 1 fosmid,WRM0620dB12 1 fosmid,WRM0627aC07 1 fosmid,WRM069bD03 1 fosmid,WRM0639bE02 1 fosmid,C36H8.1 1 Expression_profile,WRM067bF06 1 fosmid,WRM061aB09 1 fosmid,WRM0630bD03 1 fosmid}

block3490 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.020	no	no	0.45/0.45	22/22/1.00	0.0	0.0	4	0	1	0	4	0	5arm	1	nd	0.32	3	4	1	na	na

		reads	miRBase family seed
seed	-----AAGUAGU------------------------------------------------	4	miR-252
		len	cloning frequencies
			CE1
	----AAAGTAGTTAGAGTGATGGGGG----------------------------------	22	4
celegans	atttAAAGTAGTTAGAGTGATGGGGGgaaactccagtgataggagagcaaatactataaa
	************************************************************
celegans	.((((.(((((((...((.((.((((....)))).)).)).....)))...)))).))))	0.880 -11.40

celegans

chromosome:III:3720134:3720193:1

intergenic ## {SimpF: CEOP3140 -1 Operon,WRM0620cF10 1 fosmid,WRM0636bB04 1 fosmid,yk249f4 1 RNAi,WRM0611aH02 1 fosmid,WRM0615aB12 1 fosmid}

block5111 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.216	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	16	20	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------UCUUCAU---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TTCTTCATTGTTTTCGTTTG---------------------------------------------------------------------------	20	1
celegans	tttgagttttcaataaTTCTTCATTGTTTTCGTTTGaataaaacttttttttaaacattagttttttaagttttcgaaatagcgattagcatagaataacaaaaatacaaa
	***************************************************************************************************************
celegans	.(((.(((((.....(((((....((((.(((((.....(((((((......((((....))))...)))))))......)))))..)))).)))))....))))).))).	0.920 -15.90

celegans

chromosome:IV:16534793:16534903:-1

intergenic ## {SimpF: WRM0621bE04 -1 fosmid}

block5428 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.686	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	3	13	5arm	2	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	----UAUUUGU------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---CTATTTGTGCATACGATCCT------------------------------------------------------	20	1
celegans	tttCTATTTGTGCATACGATCCTaaaaaaatcttttcgaggaaatattttcagggttttcagggtgacactggaggc
	*****************************************************************************
celegans	.(((((...((((((..((((((...(((((.((((....)))).))))).))))))......))).))))))))..	0.930 -12.50

celegans

chromosome:IV:5262022:5262098:1

intergenic ## {SimpF: WRM0613dD04 1 fosmid}

block5550 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.731	no	no	0.40/0.40	20/20/1.00	0.0	0.0	3	0	1	0	12	10	5arm	1	nd	0.25	2	3	1	na	na

		reads	miRBase family seed
seed	-------------GAAUAUG----------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	------------TGAATATGAATGACGAACGG----------------------------------------------------------	20	3
celegans	ctgaaagattaaTGAATATGAATGACGAACGGatgtataatgaatgacgttaacaaactttttataacatgccgtattttctctattagt
	******************************************************************************************
celegans	((((.(((.....(((((((.(((..(((.((.(((.(((((.....))))))))..)).)))....)))..)))))))..))).)))).	0.700 -10.20

celegans

chromosome:IV:6994109:6994198:1

intergenic ## {SimpF: WRM0632cH08 1 fosmid,WRM061aE08 1 fosmid,WRM0612cA02 1 fosmid}

block4249 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.036	no	no	0.40/0.40	20/20/1.00	0.0	0.0	3	0	1	0	21	-4	3arm_loop	1	nd	0.35	3	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------UAUGCGU---------------------------------	3	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------TTATGCGTCCCTAAAAACTG---------------------	20	3
celegans	gtgatctataattttctgtttcaatatgtttgtttaatgggatgctattcagtgtttcagTTATGCGTCCCTAAAAACTGatattcaaagatggaattaca
	*****************************************************************************************************
celegans	(((((.........(((((((....(((((.((((...(((((((...................)))))))...)))).)))))....)))))))))))).	0.990 -21.71

celegans

chromosome:IV:5426030:5426130:-1

intergenic

block426 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.024	no	no	0.38/0.38	26/26/0.00	0.0	0.0	1	0	1	0	6	12	3arm	2	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CUCUUUA------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------GCTCTTTATTGAGTGTTCAAATCAGG------	26	1
celegans	caattccaatgatatcttgaacgtccattgatagcgtcgatagtcgcaaacttgcagttgacaaGCTCTTTATTGAGTGTTCAAATCAGGaaatga
	************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............................................	K07A1.5 K07A1.5 K07A1.5
celegans	((.((((..((((...(((((((..((.(((.(((((((((....(((....))).))))))..)))..))).))..))))))))))))))).)).	0.980 -24.70

celegans

chromosome:I:9590546:9590641:-1

intergenic ## {SimpF: WRM0629cA06 -1 fosmid,WRM0634aA12 -1 fosmid,WRM0639cA02 -1 fosmid,WRM065bH01 -1 fosmid,K07A1.5 -1 Expression_profile,WRM0623cA08 -1 fosmid}

block4751 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.188	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	11	27	3arm	1	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------AUAUGAG---------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------------------TATATGAGAAGAGCGGTC-----------	18	1
celegans	caagaaacagtcggattcttaaactaaaaattgaaagtttcaatgtctttttagaaggtattggagttttactctactgtTATATGAGAAGAGCGGTCtatatttcttg
	*************************************************************************************************************
celegans	(((((((.(((((..(((((((((.......(((((.(((((((..((((...))))..)))))))))))).......)))...))))))...))).))...)))))))	0.570 -21.24

celegans

chromosome:IV:14176709:14176817:-1

intergenic ## {SimpF: WRM0618cE02 -1 fosmid,WRM0626aC09 -1 fosmid,WRM0626cF11 -1 fosmid,yk364e1 -1 RNAi,R05A10.3 -1 Expression_profile}

block3706 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.219	no	no	0.35/0.35	26/26/0.00	0.0	0.0	2	0	1	0	10	16	5arm	2	58	0.27	3	2	1	na	na

		reads	miRBase family seed
seed	-----------AUGAAUG------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------GATGAATGAGCGTTTTTAAAAACTCG------------------------------------------------------------------	26	2
celegans	tcatctttttGATGAATGAGCGTTTTTAAAAACTCGaaaatacttgaaatttatgagaaaatttttattcagtttagaaactaatatttttcagatggagaa
	******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>	T20B12.1 T20B12.1 T20B12.1
celegans	((.(((.(((((.(((((...(((((((..((((.(((.......(((((((......)))))))..))))))))))))))...))))).))))).))))).	0.580 -15.80

celegans

chromosome:III:7388495:7388596:1

Same_strand|Intronic_coding|T20B12.1|T20B12.1 ## T20B12.1|protein_coding|T20B12.1|TPR repeat-containing protein T20B12.1. [Source:UniProtKB/Swiss-Prot;Acc:P41842] ## {SimpF: CEOP3436 1 Operon,WRM0626aC10 1 fosmid,WRM062aD02 1 fosmid,WRM066cF12 1 fosmid}

block5429 [novel_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.57/0.61	21/23/1.00	0.0	1.0	2	0	1	0	28	8	5arm	31	nd	0.26	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------GUUGAGU------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------------------------TGTTGAGTGGACCAACACCCC-----------------------------------------------------------------------	21	1
	----------------------------TGTTGAGTGGACCAACACCCCGG---------------------------------------------------------------------	23	1
celegans	aggaggatacaaacaacgaccgtatcacTGTTGAGTGGACCAACACCCCGGatggagctgccaagcaattccgccgtgaatggttccaaggagacagtatggttcgtcgtaagaacctcc
	************************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................................................................................	F36H12.6 F36H12.6 msp-52
celegans	.(((((......((.((((((((...((((((...(((((((.(((..((((....(((....)))...))))..)))..)))).)))....))))))))))).))).)).....)))))	0.860 -42.00

celegans

chromosome:IV:5265771:5265890:1

Same_strand|Boundary_non-coding|F36H12.6|F36H12.6 ## F36H12.6|pseudogene|msp-52|msp-52 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes. this family consists of closely related, small, basic proteins that make up 15% of sperm protein. this multigene family consists of over fifty genes, including many pseudogenes. MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation. MSPs assemble into fibrous networks that drive movement of the C. elegans sperm. msp genes are expressed only in late primary spermatocytes. [Source: WormBase] ## {SimpF: WRM0613dD04 1 fosmid}

block7530 [novel_rep_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	Satellite	0.23/0.23	22/22/1.00	0.0	0.0	1	0	1	0	16	6	5arm	1	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------AGUCUUU--------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------TAGTCTTT-ATCAAAATT----TTTGG-------------------------------------------------------------------------	22	1
celegans	AATTCCC--ATC----TCCCGTTAGTCTTT-ATCAAAATT----TTTGGAA--------TTTTCGCCAAAAAATGCTCCAAATTTTTTA---ATAAATACTAACAGGATTTTAAGGAGAATA
cbriggsae	-------------GAAGACTTGTAGTCTTT--CTGGAAAT----TTCGAAA------------TCGCGAAT-----TTCGGAATGTTCC---GGAAATGCTAT-------------------
cjaponica	----------------------GAGTCTTTAATTGGGGTTAAAATTTAAAA-----------------------TTTCAAAACAATTTT------AATAACAACAAAGATTA----------
cbrenneri	---------ATC----TCCTGGTAGTCTTT--------TT----CTCGAAAACT---TTTTTTTTGCGAAA-------AAAAAATTTTC---AAAAAGACTGCCAGGAGAT-----------
ppacificus	----------------------TAGTCTTT-GCTGG--TT----TATG------------TTTTCGTATGAGATTAGCAAACAAATTTTGACATGAATCGTGTAAAGTATCTA---------
cremanei	AATTCTCCTATCAAAATCCTGTCAGTCTTTCCACAAAATT----TTTGAAAAATAAACATTTTTTGAAACT-------CAAAAATTCTTGGGGAAAAGACTAGCAGGAGATG----AGAATT
	******* * * **
celegans	.(((((( ... (((.((((((.((( ((.((((.. ((((((( ((((......)))))..))))))..)))). ))))).)))))).)))......)).)))).	1.000 -24.40
cbriggsae	........(((((.((( (((((((( ((((((( (.....)) )))))))).)))) ))))).)))))	0.984 -23.80
cjaponica	.(((((((..(((..(((((((((..... .........)))))) )))..))).))))))).	1.000 -10.54
cbrenneri	((( (((((((((((((( (( ...(((((.( (((((((....))) ))))).))))) )))))))))))))))))))	0.999 -35.10
ppacificus	(((.(((( ((((( (( (((( ((.......((((((........))))))))))))))))).))))))...)))	0.899 -16.01
cremanei	(((((((..(((....(((((..(((((((((.((((((( (((((....((((.....))))....) )))))))).))).))))).))))..))))))))) ))))))	0.978 -32.30

celegans	chromosome:V:18903559:18903658:1	intergenic
cbriggsae	chromosome:chrI_random:2087620:2087683:1	Opposite_strand\|Intronic_coding\|NM_061066 ## {Repeats: MINISAT2_CB -89 261 -1 class=Satellite}
cjaponica	chromosome:chrUn:34095197:34095336:1	Same_strand\|Intronic_coding\|NM_013186 ## Same_strand\|Boundary_coding\|NM_001029376 ## Opposite_strand\|Intronic_coding\|NM_141224
cbrenneri	chromosome:chrUn:56194936:56195008:-1	intergenic
ppacificus	chromosome:chrUn:5097754:5097825:1	intergenic
cremanei	chromosome:chrUn:45892912:45893018:1	intergenic

block5594 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.082	no	no	0.27/0.27	22/22/1.00	0.0	0.0	1	0	1	0	13	30	3arm	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------AAUCGAA---------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------------------------GAATCGAATTTGAATATGAATG-------------	22	1
celegans	cttttttcgttttaaattcttcattgtttcgaggcattgaatcttcatcctctgatggctgcattcttttttctttaatcctcGAATCGAATTTGAATATGAATGatgaaaatatggg
	**********************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........................................................	B0218.5 B0218.5 B0218.5
celegans	((.(((((((((((.((((....(((.(((((((.((((((...(((((....)))))...............))))))))))))).)))....)))).)))..))))))))...)).	0.920 -22.57

celegans

chromosome:IV:8156365:8156482:1

intergenic ## {SimpF: WRM0634bC01 1 fosmid,WRM0631cA04 1 fosmid,WRM0634dG03 1 fosmid,WRM0621dE12 1 fosmid,WRM0617cF03 1 fosmid,WRM0614bA01 1 fosmid,WRM0632aA07 1 fosmid,WRM0638cH10 1 fosmid,WRM068dG01 1 fosmid,WRM064cD07 1 fosmid,WRM0632bC05 1 fosmid}

block2322 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	0	1	5arm	1	nd	0.25	4	1	1	na	na

		reads	miRBase family seed
seed	-UUUUAGA--------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TTTTTAGAGTTTTCGTGTCC--------------------------------	20	1
celegans	TTTTTAGAGTTTTCGTGTCCaaatttatctggattcattaaattcgaaaaaa
	****************************************************
celegans	(((((.((((((....(((((........))))).....)))))).))))).	1.000 -10.20

celegans

chromosome:II:6078250:6078301:1

intergenic ## {SimpF: WRM0629dE02 1 fosmid,H12I13.A 1 Expression_profile,WRM0636cG08 1 fosmid,WRM0617aF06 1 fosmid,WRM0638aH12 1 fosmid,WRM0623aG07 1 fosmid,WRM066dB01 1 fosmid,WRM0613aH01 1 fosmid,WRM0636dC10 1 fosmid,WRM064bD12 1 fosmid,WRM0625bB02 1 fosmid,WRM0628bF04 1 fosmid,WRM0626dA02 1 fosmid,WRM067aH06 1 fosmid}

block5324 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.23/0.23	26/26/0.00	0.0	0.0	1	0	1	0	14	2	5arm	1	nd	0.12	3	1	1	na	na

		reads	miRBase family seed
seed	---------------UACGUUU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------GTACGTTTTGTTTTAGTTTATAATTG------------------------------------------------------------	26	1
celegans	gaatcatggaatttGTACGTTTTGTTTTAGTTTATAATTGagaaataaatggaacttaattatgtaaattaaaattatgtaaattaaaatttcacggtta
	****************************************************************************************************
	<<<<<<<<<<<<..................................................................................................	F37C4.8 F37C4.8 F37C4.8
celegans	.((((.((((((((.(((((...(((((((((((((((((((............))))))..))))))))))))).))))).....)))))))).)))).	1.000 -22.30

celegans

chromosome:IV:3881175:3881274:1

intergenic ## {SimpF: F37C4.8 1 Expression_profile,WRM067bE07 1 fosmid,WRM0628dD05 1 fosmid,WRM0641bD04 1 fosmid,WRM0633cD09 1 fosmid}

block75 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.066	no	no	0.38/0.38	24/24/1.00	0.0	0.0	1	0	1	0	9	11	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	----------UUUUUGA-----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------GTTTTTGATTTGCCACCAAACTTG-------------------------------------------------------	24	1
celegans	gaattcctaGTTTTTGATTTGCCACCAAACTTGtttgaaatcgaaataaatcgatttttggagaagaaggaggattattcgaaagttc
	****************************************************************************************
celegans	..........(((((((....((.((...(((.((..(((((((......))))).))..)).)))..)).)).....)))))))...	0.970 -18.70

celegans

chromosome:I:1812852:1812939:-1

intergenic ## {SimpF: WRM0635cF03 -1 fosmid}

block5126 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.109	no	no	0.32/0.33	21/22/1.00	0.5	0.0	2	0	1	0	31	7	5arm	1	nd	0.33	4	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------UUUUUUC---------------------------------------------------------------------------------	1	novel
seed	---------------------------------UUUUUCU--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------TTTTTTCTGCAGCAAAGAATC-------------------------------------------------------------------	21	1
	-------------------------------TTTTTTTCTGCAGCAAAGAATC-------------------------------------------------------------------	22	1
celegans	gagaaaatacatggggtttagtaatttttcgTTTTTTTCTGCAGCAAAGAATCacaagaatcatgttttttattttttgtgaaaattcgaaattttttactgtttctaaatagcattcta
	************************************************************************************************************************
celegans	.((((........(((..((((((..(((((...(((((....(((((((((...(((((......)))))))))))))))))))..)))))....))))))..)))........)))).	0.720 -21.69

celegans

chromosome:IV:16661263:16661382:-1

intergenic ## {Repeats: dust 64625 64632 0 class=dust} ## {SimpF: WRM0621bE04 -1 fosmid}

block2829 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.235	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	19	4	5arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------CAUGAAU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------CCATGAATTTTTGATGATT-------------------------------------------------------------	19	1
celegans	cctgaaaaataaatagattCCATGAATTTTTGATGATTttcttgcatttttcactagaaaatcttccgttttcccagaaattttgaattttttagccag
	***************************************************************************************************
	<<<<<<-------------------------------------------------------------------------------------------------------	Y71H2AM.4.2 Y71H2AM.4 Y71H2AM.4
	<<<<<<-------------------------------------------------------------------------------------------------------	Y71H2AM.4.1 Y71H2AM.4 Y71H2AM.4
celegans	.(((.....((((.((((((...(((((((((..((((((((.............))))))))...........))))))))).))))))))))..)))	0.850 -13.74

celegans

chromosome:III:2787782:2787880:-1

Opposite_strand|Intronic_coding|Y71H2AM.4.2|Y71H2AM.4 ## Y71H2AM.4|protein_coding|Y71H2AM.4|Y71H2AM.4 [Source:RefSeq_peptide;Acc:NP_497619] ## {SimpF: Y71H2_388.D -1 Expression_profile,CEOP3084 -1 Operon}

block912 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	14	0	5arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	---------------AUGAAUG----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------GATGAATGACAGAAGATCGACAG-------------------------------------------	23	1
celegans	acgaattggatatcGATGAATGACAGAAGATCGACAGaaaactgggagtgatttagattttatcgattgatatgcaatcg
	********************************************************************************
celegans	.((.((((.((((((((..((((....((((((.(((....)))....)))))).....))))..)))))))).))))))	0.960 -18.40

celegans

chromosome:I:6145326:6145405:1

intergenic ## {SimpF: F56F4.7 1 Expression_profile,WRM0611dF11 1 fosmid,WRM0613cG12 1 fosmid,WRM0628dG06 1 fosmid,WRM0621bH03 1 fosmid,WRM065bH05 1 fosmid,WRM068cH02 1 fosmid,WRM0624dG10 1 fosmid}

block467 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.804	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	4	21	5arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----AGACUAA-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----CAGACTAACACCAAGGATACC------------------------------------------------------------------	21	1
celegans	tcatCAGACTAACACCAAGGATACCagtttgaatttgagattttgaaaccattagtccgtctcaatgttgtctgcgtgtggatcgatttga
	*******************************************************************************************
	........................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	F45H11.3b F45H11.3 F45H11.3
celegans	(((...((...((((...(((((.((........(((((((.((((.....))))...))))))))).)))))..))))...))....)))	0.660 -14.80

celegans

chromosome:I:10380699:10380789:-1

intergenic ## {SimpF: WRM0626cG06 -1 fosmid,WRM0635aE10 -1 fosmid,WRM0613aG07 -1 fosmid,WRM0616bH02 -1 fosmid,WRM0629bC06 -1 fosmid,WRM0634bH08 -1 fosmid,CEOP1600 -1 Operon,WRM0621cG01 -1 fosmid}

block2781 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.710	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	2	13	5arm	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	---UUUCCAA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--CTTTCCAAAATGACTGCAACGT------------------------------------------------------	22	1
celegans	aaCTTTCCAAAATGACTGCAACGTcgaaaaaacgattattcaaatttacaactgacgaagaggagcattgtgtgagtt
	******************************************************************************
celegans	(((((..((.((((.((....(((((.......((((.....))))......)))))....))..)))).)).)))))	0.860 -8.52

celegans

chromosome:III:598718:598795:-1

intergenic ## {SimpF: WRM0614bA07 -1 fosmid}

block4058 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.508	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	25	8	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------UUAUUAC------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------ATTATTACATTCGATCAAT-------------------------	19	1
celegans	aaaataagaagagagactgatgggattgatttgaaaatattcgtgagatttgaataaaactaactggtatcttacaATTATTACATTCGATCAATaaacgattttactaaattccgattt
	************************************************************************************************************************
celegans	.((((..(((...((...((((..(((((.(((((((((...(((((((...................)))))))...))))...))))))))))...)).))...))...)))..))))	0.780 -14.11

celegans

chromosome:IV:2559562:2559681:-1

intergenic ## {SimpF: WRM0616dE11 -1 fosmid}

block3217 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.182	no	no	0.50/0.50	18/18/0.00	0.0	0.0	2	0	1	0	4	11	3arm	3	nd	0.22	2	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------UAGUGAU--------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------TTAGTGATTCACGAGCCG----	18	2
celegans	agccgcgccacgtgcctccctgactctggatccgtttccggctcggaacTTAGTGATTCACGAGCCGgtta
	***********************************************************************
celegans	(((((.((..((((..((.((((.(((((..(((....))).)))))..)))).))..)))).))))))).	0.920 -23.00

celegans

chromosome:III:10050750:10050820:-1

intergenic ## {SimpF: WRM0631aC05 -1 fosmid,WRM0639bA05 -1 fosmid,WRM0616bB10 -1 fosmid,WRM0628dH06 -1 fosmid,WRM067aA12 -1 fosmid}

block3306 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.309	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	37	-3	3arm_loop	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UUUGUGG---------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------GTTTGTGGCATCGTTCGAGTAG-------------------------------------	22	1
celegans	gtggtggtggtggtggtggtggtctagcagttgtgtcgttgagctgccacgccgacGTTTGTGGCATCGTTCGAGTAGagatagtctaacaccgaaaaaaaacaccaaattagcg
	*******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.....................................................	Y79H2A.11 Y79H2A.11 zyg-8
celegans	((..(((((.......(((((...(((...((((.((.(((((((((((((........)))))))..))))))...)).)))).))).)))))........))))).....)).	0.690 -33.26

celegans

chromosome:III:12061572:12061686:-1

Opposite_strand|Boundary_non-coding|Y79H2A.11|Y79H2A.11 ## Y79H2A.11|protein_coding|zyg-8|The zyg-8 gene encodes a protein with a doublecortin-like domain and a protein kinase domain. mutations of zyg-8 impair mitosis at the one-cell embryonic stage, which is normally asymmetrical, but which fails to show proper asymmetry in zyg-8 mutant embryos. [Source: WormBase]

block6595 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.326	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	2	28	5arm	2	nd	0.56	5	1	1	na	na

		reads	miRBase family seed
seed	---UUUUACG---------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTTTTACGCTGGCCACAA-----------------------------------------------------------------------------------------	18	1
celegans	aaGTTTTACGCTGGCCACAAaggaaacaaaatgtgtacgatcagaaggaccaaaagccttaaaatgtttacaagcgagttttccgcaggtaaaaaagctatattaactt
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	F07B7.8 F07B7.8 F07B7.8
celegans	(((((....(((.(((.....(((((.......((((....((.((((........))))....))..)))).......)))))...))).....)))......)))))	0.710 -16.54

celegans

chromosome:V:8845759:8845867:-1

Same_strand|Intronic_coding|F07B7.8|F07B7.8 ## F07B7.8|protein_coding|F07B7.8|F07B7.8 [Source:RefSeq_peptide;Acc:NP_505274] ## {SimpF: WRM0615bG03 -1 fosmid,WRM0620bE07 -1 fosmid,WRM0632cD08 -1 fosmid,WRM0612bC01 -1 fosmid,WRM067aB04 -1 fosmid,WRM0615dE07 -1 fosmid,WRM0620cD11 -1 fosmid,WRM0615bD11 -1 fosmid,WRM0639aE12 -1 fosmid,WRM0618aE10 -1 fosmid,WRM0626cH02 -1 fosmid}

block5360 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.284	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	11	28	5arm	1	nd	0.44	5	1	1	na	na

		reads	miRBase family seed
seed	------------AUUUCUU----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------TATTTCTTCTCAAGTTTC------------------------------------------------------------------------------------	18	1
celegans	aaaaagcttatTATTTCTTCTCAAGTTTCaaataaacagtttcaataaaaagatacccattgtggtatatgttaaattgtgtataattatcttgtgaaaatgttgaatttttt
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	H06H21.10a H06H21.10 tat-2
	---------------------------------------------------------------------------------------------------------------------------	H06H21.10b H06H21.10 tat-2
celegans	((((((.(((.((((..(((.((((......(((.(((((((.((((.....(((((......))))).))))))))))).)))......)))).))))))).))).))))))	1.000 -16.40

celegans

chromosome:IV:4830193:4830305:1

Opposite_strand|Intronic_coding|H06H21.10a|H06H21.10 ## H06H21.10|protein_coding|tat-2|H06H21.10a [Source:RefSeq_peptide;Acc:NP_001023252] ## {SimpF: H06H21.10 1 Expression_profile,WRM0631cB02 1 fosmid}

block7253 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.449	no	no	0.38/0.38	24/24/1.00	0.0	0.0	1	0	1	0	30	-2	3arm_loop	1	nd	0.21	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------UUGACAG----------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------GTTGACAGTTGAATTGTATGCTTG------------------------------	24	1
celegans	cgagaaagctattacatgatattgcaaaaagcatcgaaataacaattataatgatcattatGTTGACAGTTGAATTGTATGCTTGaccagatgaagaaagtagaaataatttttc
	*******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..............................................................	F46B6.10 F46B6.10 F46B6.10
celegans	.((((((.(((((......((((.....((((((.......((((((.((((..(((......)))..)))))))))))))))).....)))).....)))))......))))))	0.630 -16.51

celegans

chromosome:V:9801943:9802057:1

intergenic ## {SimpF: WRM068aG11 1 fosmid,WRM0611dG11 1 fosmid,WRM0637bH03 1 fosmid,F46B6.10 1 Expression_profile,WRM0624cC06 1 fosmid,WRM0629dD12 1 fosmid}

block2864 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.372	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	22	0	5arm	3	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------AGAUUGA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------GAGATTGATTGGCAGTCAATT---------------------------------------------------------	21	1
celegans	gggagattggtggcgatggtggGAGATTGATTGGCAGTCAATTaaagcaaatcgactctggccaaatcatactcaacgactccggcgtccgagctcactg
	****************************************************************************************************
	..............................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	C36A4.5 C36A4.5 C36A4.5
celegans	(((((.((((((.((..(((..(((..((((((((((((.(((......))).))))...))))).)))..)))....))).)).)).)))).))).)).	0.510 -27.50

celegans

chromosome:III:3848183:3848282:-1

Opposite_strand|Boundary_non-coding|C36A4.5|C36A4.5 ## C36A4.5|protein_coding|C36A4.5|C36A4.5 [Source:RefSeq_peptide;Acc:NP_497778] ## {SimpF: WRM0628cA10 -1 fosmid,WRM0611aB12 -1 fosmid,WRM0620aH08 -1 fosmid,WRM0610cD10 -1 fosmid,WRM0613aC06 -1 fosmid}

block3753 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.440	no	no	0.38/0.38	24/24/1.00	0.0	0.0	1	0	1	0	8	1	3arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------AUUUCAA------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------GATTTCAAGATAGCTTCCATTTGG--------	24	1
celegans	ccactacaaaaaatgatgatgaattgaagatacttgagtaacattattGATTTCAAGATAGCTTCCATTTGGacaggtgt
	********************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................	ZC21.8 ZC21.8 ZC21.8
celegans	.((((.....(((((..........((((.((((((((...((....))..)))))).)).))))))))).....)))).	0.540 -12.00

celegans

chromosome:III:8519789:8519868:1

Opposite_strand|Boundary_non-coding|ZC21.8|ZC21.8 ## ZC21.8|protein_coding|ZC21.8|Uncharacterized protein ZC21.8. [Source:UniProtKB/Swiss-Prot;Acc:P34592] ## {SimpF: WRM0639dC05 1 fosmid,WRM0616cD05 1 fosmid,WRM0636aE11 1 fosmid,9ZC21.8 1 Expression_profile,WRM063cB03 1 fosmid}

block5404 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.792	no	no	0.58/0.58	26/26/0.00	0.0	0.0	1	0	1	0	2	19	5arm	3	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---UAAGCCG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTAAGCCGACTTGTCCGCCATCGTTG------------------------------------------------------------------------	26	1
celegans	atGTAAGCCGACTTGTCCGCCATCGTTGtctttcgtttgaggttgttcagagaaacttgctcagaaaactgataaactgacgatttctgtcccattatat
	****************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................................................	C24D10.8 C24D10.8 nspd-6
celegans	((((((...(((..((.((.((...(((((.....((((((...(((......)))...)))))).....)))))..)).))))....)))...))))))	0.710 -16.80

celegans

chromosome:IV:5165694:5165793:1

Opposite_strand|Boundary_non-coding|C24D10.8|C24D10.8 ## C24D10.8|protein_coding|nspd-6|Nematode Specific Peptide family, group D family member (nspd-6) [Source:RefSeq_peptide;Acc:NP_001076664] ## {SimpF: WRM0633dC11 1 fosmid,C24D10.8 1 Expression_profile}

block5041 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.837	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	24	0	3arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------UUGACAG-------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------TTTGACAGTTGCTAGGTTTTT------------------------	21	1
celegans	ttttccaagtttgtcatgtttcaacattaggatattattgcaagttatttcactctaccgtTTTGACAGTTGCTAGGTTTTTgaaaatttcggaccaattttgaaa
	**********************************************************************************************************
celegans	.((((.(((((.(((...((((((..((((......((((((((.................)))).))))..))))....))))))......))).))))).))))	0.670 -12.63

celegans

chromosome:IV:16047258:16047363:-1

intergenic ## {SimpF: WRM0627aG02 -1 fosmid}

block1726 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.448	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	4	10	3arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------UCAUGAG----------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------GTCATGAGAAGCAGAGAACT----	20	1
celegans	tttcaacttcctctcgttcctcgacaattaaaatttcatcggttttctcccagcaacggattgacttGTCATGAGAAGCAGAGAACTgaaa
	*******************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------	F13H8.2 F13H8.2 F13H8.2
celegans	.((((.....((((.(((.(((((((..............((((...(((.......)))..))))))))..))).)))))))...)))).	0.690 -14.23

celegans

chromosome:II:6272699:6272789:-1

Opposite_strand|Boundary_coding|F13H8.2|F13H8.2 ## F13H8.2|protein_coding|F13H8.2|F13H8.2 [Source:RefSeq_peptide;Acc:NP_495256] ## {SimpF: WRM0634bD11 -1 fosmid,WRM0613aG12 -1 fosmid,WRM065aE09 -1 fosmid,WRM0625cD01 -1 fosmid,WRM0628bC05 -1 fosmid,WRM0615dG11 -1 fosmid,F13H8.2 -1 Expression_profile,WRM0638cF02 -1 fosmid,WRM0636cH12 -1 fosmid,yk272f12 -1 RNAi,WRM0626bD10 -1 fosmid,WRM064aE02 -1 fosmid,WRM0615cA09 -1 fosmid,WRM066cH09 -1 fosmid,WRM0614cA10 -1 fosmid}

block1542 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.458	no	no	0.44/0.44	25/25/0.00	0.0	0.0	1	0	1	0	3	21	3arm	2	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------UGUUGAU--------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------GTGTTGATTGTTGGGTCCAAGTTTG---	25	1
celegans	agacttctttcctcctcggagtcggtttggggacgcttttttggtacaagttcatcttctgtgttttcaattGTGTTGATTGTTGGGTCCAAGTTTGgtc
	****************************************************************************************************
celegans	.((((.(((....((.(((((((((.(((..(((((.....(((.......)))......)))))..))).....)))))).)))))...)))...))))	0.870 -19.30

celegans

chromosome:II:2591007:2591106:-1

intergenic ## {SimpF: WRM0627bE01 -1 fosmid,WRM066aF05 -1 fosmid,WRM063cF01 -1 fosmid,WRM0627cD03 -1 fosmid}

block8141 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.102	no	no	0.62/0.62	24/24/1.00	0.0	0.0	1	0	1	0	2	16	5arm	2	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---UUUGGCC-----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTTTGGCCAAGCGGACTGGAGCAC-------------------------------------------------------------	24	1
celegans	caGTTTGGCCAAGCGGACTGGAGCACattggaaaaaataattggaaaagattagagatgaggaaagcaaaagccgtggtcgatgctg
	***************************************************************************************
celegans	((((((((((..((((.((...((.............(((((......)))))............))...)))))))))))).))))	0.410 -18.31

celegans

chromosome:X:1011750:1011836:1

block6646 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.065	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	34	4	3arm	1	nd	0.16	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UGAAUUG---------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------TTGAATTGAGTTGTAGATC----------------------------------	19	1
celegans	ttcacttgtttctctgcatattatcaatcctatttacaattcagttagtgagagtaatgaacttTTGAATTGAGTTGTAGATCaagaatacatgaaaataattttgagtttaaatga
	*********************************************************************************************************************
celegans	.(((.(((...(((....((((.(((((.(((((((((((((((((...((((((.....)))))).)))))))))))))))..)).))...))).)))).....)))..))).)))	0.810 -22.90

celegans

chromosome:V:10191314:10191430:-1

intergenic ## {SimpF: WRM066bG06 -1 fosmid,WRM0632dF04 -1 fosmid,WRM065dD10 -1 fosmid,WRM0636dD08 -1 fosmid,WRM0626cH03 -1 fosmid,WRM0638cG12 -1 fosmid,WRM0617dF09 -1 fosmid}

block8440 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.088	no	no	0.55/0.55	22/22/1.00	0.0	0.0	2	0	1	0	6	1	3arm	1	nd	0.32	4	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------CUCGUGG--------------------	2	novel
		len	cloning frequencies
			CE1
	------------------------------------------TCTCGTGGGAGCCATTGAGTTC------	22	2
celegans	ctgagtccggggcgttggacacccatgtgagttatgagtttcTCTCGTGGGAGCCATTGAGTTCacttag
	**********************************************************************
celegans	((((((...((((..(((...((((((.(((..........))).))))))..)))....))))))))))	0.980 -23.10

celegans

chromosome:X:9191897:9191966:1

block6337 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.464	no	no	0.29/0.29	24/24/1.00	0.0	0.0	1	0	1	0	22	4	5arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------UUUUUUG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------CTTTTTTGGTTTATCGGTTTTTAG----------------------------------------------------------	24	1
celegans	taggtgattattttatatttgtCTTTTTTGGTTTATCGGTTTTTAGaggttattattttttaagatttagaatatttagaagttatatatctttattattactt
	********************************************************************************************************
celegans	.(((((((.....(((((....(((((...((((...((((((.((((((....)))))).))))))..))))....)))))..)))))........)))))))	0.980 -11.22

celegans

chromosome:MtDNA:12100:12203:1

intergenic ## {Repeats: dust 12174 12198 0 class=dust}

block6089 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.114	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	21	4	5arm	1	nd	0.24	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------UUGCGGC---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------TTTGCGGCGCAGTGTCTTATT--------------------------------------------------------	21	1
celegans	ggtctagtatgtcacactcagTTTGCGGCGCAGTGTCTTATTtgaattgttttttttttaaataaaatgcactgttctataacaacatattttaatca
	**************************************************************************************************
celegans	(((..(((((((........(((...((.(((((((.(((((((((..........)))))))))...))))))).))..))).)))))))...))).	0.530 -17.60

celegans

chromosome:IV:15695167:15695264:1

intergenic

block1499 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.204	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	2	9	5arm	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---UUGACGA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTTGACGATAGTCTTGATGATC--------------------------------------------------	22	1
celegans	taGTTGACGATAGTCTTGATGATCacactggtcctttggccaggttttgtttcacttaagcggtcttttaaact
	**************************************************************************
celegans	.((((...(((...((((((((.((..((((((....))))))....))..))).)))))..))).....))))	0.920 -15.20

celegans

chromosome:I:15071324:15071397:1

intergenic ## {SimpF: WRM0640bG08 1 fosmid}

block3240 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.231	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	18	-3	3arm_loop	1	7	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------GUGUCUC-------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------AGTGTCTCAATCGAGTTTCCG------------------	21	1
celegans	agcctaagaatgatccaacgagaaaagcggtgaccAGTGTCTCAATCGAGTTTCCGtcggggatctctgatcct
	**************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++	Y39A1A.2 Y39A1A.2 Y39A1A.2
celegans	......(((..(((((.(((.((((..(((((((....)))...))))..)))))))...))))))))......	0.950 -18.80

celegans

chromosome:III:10602627:10602700:-1

Same_strand|Intronic_coding|Y39A1A.2|Y39A1A.2 ## Y39A1A.2|protein_coding|Y39A1A.2|Y39A1A.2 [Source:RefSeq_peptide;Acc:NP_499336] ## {SimpF: Y39A1A.2 -1 Expression_profile}

block1696 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.653	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	4	19	3arm	1	nd	0.23	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------AUUUGAG------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------------GATTTGAGAGTGAAGCGCTTCT----	22	1
celegans	tcaaggaagacgagttctggaaattgaatatcaacttttgcgaaataggaaataacttacaacgaggccaaagtGATTTGAGAGTGAAGCGCTTCTtaga
	****************************************************************************************************
celegans	((.((((((.((..(((......((((((....(((((.((....((((......)))).......)).))))).))))))....))).)))))))).))	0.660 -15.30

celegans

chromosome:II:5639509:5639608:-1

intergenic ## {SimpF: WRM063aB04 -1 fosmid,WRM0630dF09 -1 fosmid,WRM0622cF10 -1 fosmid,WRM0622cD10 -1 fosmid,WRM0629bD10 -1 fosmid,WRM0610dH02 -1 fosmid,WRM0627bF08 -1 fosmid,WRM0631cG08 -1 fosmid,WRM0618cF02 -1 fosmid,F59E12.3 -1 Expression_profile,WRM0610bD09 -1 fosmid,WRM0611bA01 -1 fosmid,WRM068cE02 -1 fosmid}

block1069 [novel_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.331	no	no	0.46/0.50	22/24/1.00	1.7	2.3	3	0	1	0	4	1	5arm	1	nd	0.38	6	3	1	na	na

		reads	miRBase family seed
seed	-----UUAAGUU------------------------------------------------------------	2	novel
seed	----------UUGCGCG-------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----GTTAAGTTGCGCGTCCAAGAGT----------------------------------------------	22	2
	---------GTTGCGCGTCCAAGAGTAAAAGTT---------------------------------------	24	1
celegans	caatGTTAAGTTGCGCGTCCAAGAGTAAAAGTTgcgaaataacaaggttttggaaggtaatgattattttga
	************************************************************************
celegans	(((.((...(((((...(((((((......((((.....))))....)))))))..)))))....)).))).	0.960 -10.40

celegans

chromosome:I:9576072:9576143:1

intergenic ## {SimpF: WRM0639cA02 1 fosmid,WRM065dH12 1 fosmid,WRM065bH01 1 fosmid,WRM0629cA06 1 fosmid,WRM0623cA08 1 fosmid,WRM0633bG11 1 fosmid,WRM0616bC07 1 fosmid}

block8164 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.217	no	no	0.30/0.30	23/23/1.00	0.0	0.0	1	0	1	0	1	15	3arm	1	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUUAGAA----------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------GATTAGAAGGTTTAGTATTGTTG-	23	1
celegans	tcggcctttcctcgattttctggaatcaaatattaattattattgatattgagggcGATTAGAAGGTTTAGTATTGTTGa
	********************************************************************************
celegans	(((((.....((.((((((((((..((.(((((((((....)))))))))...))...)))))))))).))....)))))	0.590 -15.00

celegans

chromosome:X:1668372:1668451:1

intergenic ## {SimpF: WRM066aA09 1 fosmid,WRM067dD02 1 fosmid,WRM0641aB04 1 fosmid}

block6818 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.316	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	10	14	5arm	2	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----------UUUUAUU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------GTTTTATTCAATACGAGGATGTCCG-------------------------------------------------------	25	1
celegans	gcatacaaaaGTTTTATTCAATACGAGGATGTCCGatacactttgatgggtaccacttcagaacatatcctcgttggcggcttcaatgct
	******************************************************************************************
	..............................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	H12D21.13 H12D21.13 nspa-4
celegans	((((....(((((....(((..((((((((((.........((((((((...)))..)))))..))))))))))))).)))))..)))).	0.690 -18.10

celegans

chromosome:V:14884766:14884855:-1

intergenic ## {SimpF: WRM0639cE11 -1 fosmid,WRM0625cE01 -1 fosmid,WRM0628aA08 -1 fosmid,WRM0613bG05 -1 fosmid,WRM0623dF08 -1 fosmid}

block733 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.066	no	no	0.71/0.71	24/24/1.00	0.0	0.0	1	0	1	0	0	0	5arm	1	nd	0.17	1	1	1	na	na

		reads	miRBase family seed
seed	-GUCUGGC----------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	CGTCTGGCGCAGCCGGTTGGCTGT------------------------------	24	1
celegans	CGTCTGGCGCAGCCGGTTGGCTGTtcgcacagtaaactgtagcgcgctggttcg
	******************************************************
celegans	((.(((((((.(((((((.(((((....))))).)))))..)))))))))..))	0.910 -21.80

celegans

chromosome:I:2410128:2410181:1

intergenic

block7894 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.186	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	29	0	3arm	1	nd	0.17	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AUGAGAA---------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------GATGAGAAGGACATTTTT-----------------------------	18	1
celegans	gattaaagcagtcaggcaagtgttttgagaaattccttcctaataagttgttcatttcaaGATGAGAAGGACATTTTTttaaaactatctcaacagtgacattaatt
	***********************************************************************************************************
celegans	..........((((....((.(((((((((((.((((((............(((((....)))))))))))...)))))))))))...))......)))).......	0.590 -19.40

celegans

chromosome:X:12216110:12216216:-1

intergenic ## {SimpF: WRM0620dA11 -1 fosmid,WRM0615bE12 -1 fosmid}

block2085 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.027	no	no	0.30/0.30	20/20/1.00	0.0	0.0	3	0	1	0	2	13	5arm	1	nd	0.20	2	3	1	na	na

		reads	miRBase family seed
seed	---UAGGAGU--------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	--TTAGGAGTCGTCAAATTTTT--------------------------------------------------------	20	3
celegans	tgTTAGGAGTCGTCAAATTTTTtgatttttttacagcaattgtgtggaaatttcagtaattttagtacaatttctaat
	******************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	C38C6.4 C38C6.4 sre-13
celegans	.(((((((((.((.(((((..((((..((((((((.......))))))))..)))).)))))....)).)))))))))	0.990 -15.40

celegans

chromosome:II:14635643:14635720:-1

Same_strand|Intronic_coding|C38C6.4|C38C6.4 ## C38C6.4|protein_coding|sre-13|Serpentine receptor class epsilon-13 (Protein sre-13). [Source:UniProtKB/Swiss-Prot;Acc:O45300] ## {Repeats: dust 30394 30398 0 class=dust} ## {SimpF: C38C6.4 -1 Expression_profile,WRM069dE06 -1 fosmid,WRM0627aA11 -1 fosmid,WRM062cC10 -1 fosmid,WRM063bG01 -1 fosmid,WRM061cA06 -1 fosmid,WRM068cG04 -1 fosmid,WRM064aD11 -1 fosmid,WRM061cA01 -1 fosmid,WRM0628bA03 -1 fosmid,WRM0613bH08 -1 fosmid}

block3292 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.398	no	no	0.25/0.25	24/24/1.00	0.0	0.0	1	0	1	0	24	-4	5arm_loop	1	nd	0.46	5	1	1	na	na

		reads	miRBase family seed
seed	-------------------------AUAUUGU----------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------GATATTGTTTTGATTGATTTGTTG------------------------------------	24	1
celegans	caatttccacatttttcaaaaaacGATATTGTTTTGATTGATTTGTTGgaaataagtggaggcggcgtggaaaaattcgagatt
	************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...............................................	Y41C4A.18 Y41C4A.18 Y41C4A.18
celegans	.((((((...(((((((.....(((....((((((.(((.((((.....)))).))).)))))).))).)))))))..))))))	0.430 -14.40

celegans

chromosome:III:11730546:11730629:-1

block477 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.171	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	9	15	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------ACCGAGG----------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------AACCGAGGCAGACAGTATCTG---------	21	1
celegans	ttgaatgttagctgtcacaataattcccttgttttcagcattaatgaatttcatcgatagctcatcAACCGAGGCAGACAGTATCTGaaatttaaa
	************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------	F25H2.8.2 F25H2.8 ubc-25
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------	F25H2.8.1 F25H2.8 ubc-25
celegans	((((((.(((((((((..........(((((.....(((((..(((.....)))..)).))).......)))))..)))))...)))).)))))).	0.720 -16.90

celegans

chromosome:I:10563088:10563183:-1

Opposite_strand|Boundary_coding|F25H2.8.1|F25H2.8 ## F25H2.8|protein_coding|ubc-25|UBiquitin Conjugating enzyme family member (ubc-25) [Source:RefSeq_peptide;Acc:NP_492764] ## {SimpF: WRM066dG06 -1 fosmid,WRM067bB09 -1 fosmid,WRM0625bF11 -1 fosmid}

block6391 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.053	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	16	18	5arm	1	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------UGAUUUG---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------GTGATTTGCTGGGTGCGCAGGT-------------------------------------------------------------------------	22	1
celegans	gaatgagactaccgccGTGATTTGCTGGGTGCGCAGGTagccggcgcgctcccaacaattgttgggtagaatgtgcgctctaacgcacttttcgaaggcgtcactggttcc
	***************************************************************************************************************
celegans	((((.((.....((((....((((..(((((((....(((..(((((((.((((((....))))))......)))))))))).)))))))..))))))))...)).)))).	0.640 -42.00

celegans

chromosome:V:2639525:2639635:-1

intergenic ## {SimpF: WRM0617bC11 -1 fosmid}

block3076 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.141	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	15	0	5arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	----------------GAUGACG------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------GGATGACGACATTAATAT--------------------------------------------	18	1
celegans	ggaatcggattcactGGATGACGACATTAATATaaaaaactaaaagtgtaaatgttctttccatcattccccacccc
	*****************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.......................................................	T20H4.2 T20H4.2 T20H4.2
celegans	((....(((.....((((....((((((.((((............)))).))))))...))))....)))....)).	0.990 -11.80

celegans

chromosome:III:7241269:7241345:-1

Opposite_strand|Boundary_non-coding|T20H4.2|T20H4.2 ## T20H4.2|protein_coding|T20H4.2|T20H4.2 [Source:RefSeq_peptide;Acc:NP_498597] ## {SimpF: WRM0613bC02 -1 fosmid,WRM069cD05 -1 fosmid,WRM0622aE05 -1 fosmid,WRM061aF10 -1 fosmid}

block6449 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.068	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	8	3	5arm	25	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	---------AAAUAUA--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------CAAATATAGTGACTCTGGCCGTT-----------------------------------------------	23	1
celegans	ccgttcacCAAATATAGTGACTCTGGCCGTTcaccaaaattagtgactctggctgttcaccagatatagtgactcgga
	******************************************************************************
celegans	(((.((((...((((.((((...((((((.((((........))))...)))))).))))...)))).))))..))).	1.000 -19.70

celegans

chromosome:V:5284717:5284794:-1

intergenic ## {Repeats: trf 21 44 0 class=trf,trf 1542 1565 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0621bA04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid,WRM066dC01 -1 fosmid}

block5966 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.367	no	no	0.09/0.09	22/22/1.00	0.0	0.0	1	0	1	0	1	20	3arm	1	nd	0.09	1	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------AAAGAAA---------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------TAAAGAAATATTTAATTTTGTT-	22	1
celegans	caaactgaattttgaaaaattttaatttgtttcaagatgtgtgtgaaacaatttctaaatgagtcttggaagTAAAGAAATATTTAATTTTGTTt
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	Y57G11C.31 Y57G11C.31 Y57G11C.31
	.......................................................<<<<<<<<<<<<<<<<<<<<<.............................	Y57G11C.269 Y57G11C.269 21ur-1553
celegans	.((((.(((((...(((.(((((..(((((((((((((.(((..(((.....)))...))).))))))))).))))))))).)))))))).))))	0.580 -12.40

celegans

chromosome:IV:14686260:14686354:1

Same_strand|Intronic_coding|Y57G11C.31|Y57G11C.31 ## Y57G11C.31|protein_coding|Y57G11C.31|Y57G11C.31 [Source:RefSeq_peptide;Acc:NP_502775] ## {SimpF: Y57G11C.31 1 Expression_profile,WRM0617bD03 1 fosmid,yk372g2 1 RNAi}

block5529 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.159	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	42	-2	3arm_loop	3	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AGAAGAA------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------AAGAAGAACAGCTTGTCACG------------------------------------------	20	1
celegans	tgatatgattaatagaacagatgattaaaacgggaaatccacaggatgggttttacAAGAAGAACAGCTTGTCACGgaggtacccatttgcatcatcgtgaagtgattgggctgtcaa
	**********************************************************************************************************************
celegans	(((((((((((.....((.((((((..(((.(((...((((((((.((..((((....))))..)).)))))...)))....))).)))..))))))))....))))))...))))).	0.950 -26.30

celegans

chromosome:IV:6539139:6539256:1

intergenic ## {SimpF: WRM0628aE01 1 fosmid,WRM0631dD07 1 fosmid,WRM0615cA12 1 fosmid,WRM0624aF05 1 fosmid,WRM0625dB01 1 fosmid,WRM0613dD06 1 fosmid}

block4323 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.227	no	no	0.37/0.37	19/19/0.00	0.0	0.0	2	0	1	0	0	3	3arm	1	nd	0.28	2	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------AGUCAUA-----------	2	novel
		len	cloning frequencies
			CE1
	------------------------------------TAGTCATAGGGGTATATCT	19	2
celegans	aggatttattttgaattgaacttcattttaagttgaTAGTCATAGGGGTATATCT
	*******************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	C43G2.2 C43G2.2 C43G2.2
celegans	.((((.((((((....(((...(((........)))...)))..)))))).))))	0.990 -8.40

celegans

chromosome:IV:6567474:6567528:-1

Same_strand|Intronic_coding|C43G2.2|C43G2.2 ## C43G2.2|protein_coding|C43G2.2|C43G2.2 [Source:RefSeq_peptide;Acc:NP_501001] ## {SimpF: WRM0625dB01 -1 fosmid,WRM0631dD07 -1 fosmid}

miR-Intess™

Additional hairpins

block8154 [novel_nonpairedHIGH_bulgeHIGH]

block1131 [novel_randfoldOK_bulgeHIGH]

block2740 [novel_nonpairedHIGH_bulgeHIGH]

block7707 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

block6286 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block3037 [novel_lenNOK_shortStem]

block7058 [novel]

block4384 [novel_bulgeHIGH]

block4241 [novel_Multihit_randfoldOK_nonpairedHIGH]

block5259 [novel_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

block5049 [novel]

block310 [novel_lenNOK_loopOverlap_nonpairedHIGH]

block1078 [novel_lenNOK_nonpairedHIGH]

block1518 [novel]

block7704 [novel_nonpairedHIGH_bulgeHIGH]

block4910 [novel_lenNOK]

block4699 [novel_shortStem_nonpairedHIGH]

block1551 [novel_shortStem_nonpairedHIGH]

block2022 [novel_lenNOK]

block6949 [novel_nonpairedHIGH]

block4659 [novel_nonpairedHIGH]

block4674 [novel_lenNOK_shortStem_nonpairedHIGH]

block8040 [novel_loopOverlap_nonpairedHIGH]

block6146 [novel]

block5898 [novel_shortStem_nonpairedHIGH]

block1576 [novel_nonpairedHIGH]

block6451 [novel_Multihit]

block3971 [novel_lenNOK]

block3195 [novel_lenNOK_shortStem]

block513 [novel_lenNOK_shortStem]

block8137 [novel_loopOverlap_bulgeHIGH]

sblock16 [novel_cloningOK_multiarm_DicerNOK]

block3478 [novel]

block1261 [novel_lenNOK]

block5158 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

block1809 [novel_shortStem]

block807 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block1077 [novel_lenNOK]

block56 [novel_lenNOK]

block5518 [novel_cloningOK_shortStem]

block2334 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

block704 [novel]

block4270 [novel_nonpairedHIGH_bulgeHIGH]

block4412 [novel_loopOverlap]

block6448 [novel_Multihit_shortStem]

block6071 [novel_lenNOK_shortStem_nonpairedHIGH]

block7466 [novel_nonpairedHIGH]

block5451 [novel_lenNOK]

block3841 [novel_lenNOK_loopOverlap]

block6387 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block3313 [novel]

block8088 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block5102 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

block5421 [novel_lenNOK_shortStem_randfoldOK]

block4273 [novel_nonpairedHIGH_bulgeHIGH]

block3120 [novel_loopOverlap]

block4746 [novel_lenNOK_nonpairedHIGH]

block1455 [novel_lenNOK_shortStem_5varHIGH_nonpairedHIGH_bulgeHIGH]

block7185 [novel_lenNOK_shortStem_nonpairedHIGH]

block970 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block6711 [novel]

block4149 [novel_lenNOK]

block8461 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

block76 [novel_lenNOK_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

block5372 [novel_lenNOK_mirtron]

block1702 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block5914 [novel_lenNOK]

block7068 [novel_lenNOK]

block5885 [novel_lenNOK_shortStem]

block4095 [novel]

block7078 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

block5057 [novel_lenNOK_nonpairedHIGH]

block8182 [novel_nonpairedHIGH]

block2204 [novel]

block707 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

block2389 [novel_lenNOK_shortStem]

block2125 [novel_lenNOK]

block1730 [novel_nonpairedHIGH]