Comments:
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All identified hairpins are classified into three confidence levels:
1 = confidend miRNAs
2 = candidate miRNAs
3 = other hairpins
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Confidence level is determined from a combination of hairpin features that belong to "good" or "bad" categories.
Good features: DicerOK, cloningOK and randfoldOK
Bad features: DicerNOK, 5varHIGH, shortStem, Multihit, lenNOK, RNA, loopOverlap, gcHIGH and editedOnly
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The following cominations determine confidence levels:
confident: bad = 0 AND good >= 2
candidate: (bad = 0 AND good > 0) OR (bad = 1 AND good >= 2)
other: the rest.
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C.elegans small RNAs
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