logoC.elegans small RNAs

miR-Intess™


Summary
Preprocessing
Mapping
Composition

miR classification
miR expression
Downloads
Table
Thresholds
Families

Clusters
Known and novel clustered miRNAs
clusterIDLocationDistance
cluster 1: 7 miRNAs cel-mir-35chrII:11537524:11537620:1
 cel-mir-36chrII:11537629:11537725:18
 cel-mir-37chrII:11537752:11537846:126
 cel-mir-38chrII:11537846:11537943:1-1
 cel-mir-39chrII:11538005:11538091:161
 cel-mir-40chrII:11538100:11538191:18
 cel-mir-41chrII:11538224:11538320:132
 
cluster 2: 3 miRNAs cel-mir-42chrII:11889727:11889821:1
 cel-mir-43chrII:11889826:11889923:14
 cel-mir-44chrII:11889939:11890034:115
 
cluster 3: 4 miRNAs cel-mir-229chrIII:2172440:2172554:1
 cel-mir-64chrIII:2172841:2172938:1286
 cel-mir-65chrIII:2172990:2173089:151
 cel-mir-66chrIII:2173096:2173194:16
 
cluster 5: 2 miRNAs cel-mir-357chrV:8580520:8580628:-1
 cel-mir-358chrV:8580842:8580941:-1213
 
cluster 6: 2 miRNAs cel-mir-250chrV:11769899:11769992:-1
 cel-mir-61chrV:11770038:11770128:-145
 
cluster 7: 3 miRNAs cel-mir-56chrX:13144612:13144708:-1
 cel-mir-55chrX:13144748:13144845:-139
 cel-mir-54chrX:13144917:13145015:-171
 
cluster 8: 2 miRNAs cel-mir-73chrX:2368759:2368857:1
 cel-mir-74chrX:2369037:2369133:1179
 
cluster 9: 2 miRNAs cel-mir-359chrX:3004283:3004392:1
 cel-mir-785chrX:3004660:3004753:1267
 
cluster 10: 2 miRNAs cel-mir-240chrX:7882567:7882663:1
 cel-mir-786chrX:7882696:7882785:132
 
Cut-off distance for cluster calculation: 1000 nt.
Candidate clustered miRNAs
clusterIDLocationDistance
cluster 4: 2 miRNAs sblock43_candchrIV:1026555:1026666:1
 block5234_candchrIV:1027193:1027299:1526
 
Cut-off distance for cluster calculation: 1000 nt.
©2008 InteRNA Genomics B.V.