miR-Intess: cel-mir-74

cel-mir-74

Cloning frequencies
absolute	CE1
cel-mir-74 3arm	940
normalized	CE1
cel-mir-74 3arm	0.657

block8198 (miRBase cel-mir-74) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-74	0.001	no	no	0.39/0.53	18/22/0.73	0.0	0.5	907	0	1	0	16	5	3arm	1	nd	0.21	1	940	1	na	na

Clusters
Located in cluster 8: cel-mir-73, cel-mir-74

Families
Member of family miR-73/74 (seed GGCAAGA): cel-mir-74, cel-mir-72, cel-mir-73

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------GGCAAGA--------------------------------------------	930	miR-73/74
seed	---------------------------------------------------------------------------------------GCAAGAA-------------------------------------------	6	miR-268
seed	------------------------------------------------------------------------------------------AGAAAUG----------------------------------------	2	novel
seed	-------------------------------------------------------------------------------------UGGCAAG---------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC-------------------------------	21	664
	-------------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCT---------------------------------	19	243
cel-miR-74	-------------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA------------------------------	22	17
	--------------------------------------------------------------------------------------GGCAAGAAATGGCAGTCTACA------------------------------	21	4
	-------------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTA--------------------------------	20	4
	-------------------------------------------------------------------------------------TGGCAAGAAATGGCAGTC----------------------------------	18	2
	-----------------------------------------------------------------------------------------AAGAAATGGCAGTCTACA------------------------------	18	2
	--------------------------------------------------------------------------------------GGCAAGAAATGGCAGTCT---------------------------------	18	2
	-----------------------------------------------------------------------------------C-TGGCAAGAAATGGCAGTCTAC-------------------------------	22	1
	-----------------------------------------------------------------------------------C-TGGCAAGAAATGGCAGTC----------------------------------	19	1
celegans	-----------------AAATGGTTCAAAAAACGTTCGGGCTTCCATC-TCTTTCCCAGCCTAC--ATC--TCAACCTGG--GC-TGGCAAGAAATGGCAGTCTACACGT--------------TTTTCAACCAAA-
cbriggsae	-----CGAGACTAAGAAAAAAGGTCC---GCACTTTTGGGCTTCCATA-TCTTTCCCAGCTCCT--CTCATTTACTATGGATGC-TGGCAAGAAATGGCAGTCTAGATGTGCAAAATCCTGCAACTCTCTCTCTCG-
cjaponica	CTGTGAAGCGGTGAAGTGAATGGCGACACGCGCGATTGGGCTTCCATA-TCTTTCCCAGCTGAAACATCTTTTAAC------GC-TGGCAAGAAATGGCAGTCTACTCGCGCATGCCT-----GCTCCCGCTCTCAG
cbrenneri	------TGACTCGGAGCGAAAGGATA---GCACGTTTGGGCTTCCATTATCTTTCCCAGCAGGTTCA----CGAACGTAT--GC-TGGCAAGAAATGGCAGTCCACATGTGTAAATCCTCGAAGCTCTCGTCA----
ppacificus	---------------ATGAAGAG---------------------CATTTCCTTTCTCAGGTCATTGATCTTCTAGCCTTG--GCTTGGCAAGAAATGG---------------------------TCTCTTCAT---
cremanei	GTGACCGAAGACGCTGGAAAAGGTCG---ACACGTTTGGACTTCCGTC-TCTTTCCCAGCTGAT--ATTGGATAGCAT----GC-TGGCAAGAAATGGCAGTCCAGATGTGTACACCTTC-AAGCTCTTGTCAT---
	** * * * *** * * *********** *
celegans	...(((((..((((((((..(((((.((((. ((((..((((((((. ... ......))) )) ))).)))).)))).)))))..)))) )))).)))))..	1.000 -38.60
cbriggsae	(((((...(((....(((... ((((.((((((((.((((. ((((..((((((((. ............))).)) ))).)))).)))).)))))))).)))).....))).....)))...)))))	1.000 -44.22
cjaponica	(((.((.((((.((.((....((((....((((((.((((((.((((. ((((..((((((((((....))))).. )) ))).)))).)))).)))))).)))))).)))). )))))))))).)))	0.981 -52.00
cbrenneri	.(((..(((((...(((((. ((((((.((((((.(((((.((((..((((((.(((.. ..)))...) )) ))).))))))))).)))))).))))))..)))))....))))).))).	1.000 -51.20
ppacificus	(((((((( ((((((.....((((((((...............)) ))))))...)))))). .))))))))	0.640 -19.76
cremanei	(((((..((((.(((....(((((.. (((((((((((((.((((. ((((..(((((((.( ((...))).)). )) ))).)))).)))).)))))))))))))..))))). .))))))))))))	1.000 -51.70

celegans	chromosome:X:2369037:2369133:1	intergenic ## {SimpF: WRM0640dB08 1 fosmid,WRM0614bE04 1 fosmid,WRM0611cC07 1 fosmid,WRM0624bG04 1 fosmid,WRM066bF02 1 fosmid,WRM0639bG12 1 fosmid,WRM067cD10 1 fosmid,WRM0612dD05 1 fosmid,WRM0620aG05 1 fosmid,WRM0612dG02 1 fosmid,WRM064dH03 1 fosmid,WRM0617aH11 1 fosmid} ## {MIR: cel-mir-74}
cbriggsae	chromosome:chrX:4493555:4493678:-1	Opposite_strand\|Intronic_coding\|NM_001087279 ## Opposite_strand\|Boundary_non-coding\|NM_178655 ## Same_strand\|Intronic_coding\|NM_001109816 ## {MIR: cbr-mir-74}
cjaponica	chromosome:chrUn:6831841:6831964:1	intergenic
cbrenneri	chromosome:chrUn:1030413:1030529:-1	intergenic
ppacificus	chromosome:chrUn:17469661:17469797:-1	intergenic
cremanei	chromosome:chrUn:103837391:103837512:-1	intergenic

miR-Intess™

cel-mir-74

block8198 (miRBase cel-mir-74) [miRNAknown_cloningHIGH_randfoldOK]