cel-mir-72
| absolute | CE1 |
| cel-mir-72 5arm | 305 |
| cel-mir-72 3arm | 4 |
| normalized | CE1 |
| cel-mir-72 5arm | 0.213 |
| cel-mir-72 3arm | 0.003 |
sblock15 (miRBase cel-mir-72) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-72 | 0.001 | no | no | 0.40/0.59 | 19/23/0.98 | 0.0 0.0 | 0.2 0.5 | 253 4 | 0 0 | 1 1 | 0 0 | 16 17 | 1 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.23 0.27 | 2 2 | 309 | 1 | 1 | 2 |
| Member of family miR-73/74 (seed GGCAAGA): cel-mir-74, cel-mir-72, cel-mir-73 |
| reads | miRBase family seed | ||
| seed | --------------------------------GGCAAGA--------------------------------------------------------------------------------------------------------------------------- | 296 | miR-73/74 |
| seed | ---------------------------------GCAAGAU-------------------------------------------------------------------------------------------------------------------------- | 7 | novel |
| seed | --------------------------------------------------------------------------------------------------------------GCUUCGC--------------------------------------------- | 4 | novel |
| seed | ------------------------------------AGAUGUU----------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------CAAGAUG------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------AGGCAAGATGTTGGCATAGCT-------G------------------------------------------------------------------------------------------------------ | 22 | 193 | |
| -------------------------------AGGCAAGATGTTGGCATAGCT-------------------------------------------------------------------------------------------------------------- | 21 | 60 | |
| -------------------------------AGGCAAGATGTTGGCATAGC--------------------------------------------------------------------------------------------------------------- | 20 | 41 | |
| --------------------------------GGCAAGATGTTGGCATAGC--------------------------------------------------------------------------------------------------------------- | 19 | 5 | |
| -------------------------------------------------------------------------------------------------------------AGCTTCGCCACATTCTGCCACG------------------------------- | 22 | 2 | |
| -------------------------------AGGCAAGATGTTGGCATAG---------------------------------------------------------------------------------------------------------------- | 19 | 2 | |
| -------------------------------------------------------------------------------------------------------------AGCTTCGCCACATTCTGCCAC-------------------------------- | 21 | 2 | |
| ---------------------------------GCAAGATGTTGGCATAGCT-------G------------------------------------------------------------------------------------------------------ | 20 | 1 | |
| -----------------------------------AAGATGTTGGCATAGCT-------GAA---------------------------------------------------------------------------------------------------- | 20 | 1 | |
| --------------------------------GGCAAGATGTTGGCATAGCT-------GA----------------------------------------------------------------------------------------------------- | 22 | 1 | |
| --------------------------------GGCAAGATGTTGGCATAGCT-------------------------------------------------------------------------------------------------------------- | 20 | 1 | |
| cel-miR-72 | -------------------------------AGGCAAGATGTTGGCATAGCT-------GA----------------------------------------------------------------------------------------------------- | 23 | - |
| celegans | -------------AGGTCCCGT--CAGAGCTAGGCAAGATGTTGGCATAGCT-------GAATGATCGCTATAAC---------------------------AACTATCAGCTTCGCCACATTCTGCCACGCACTGATGTGAGGACCT-------------- | ||
| ppacificus | --------------GGTCGCGTATCCGAGTGAGGCAAGATGTTGGCATAGCTGATGGTCGAATTGAAGCAAT-----------------------------------TCCGCTCTGCCACATGTAGCCACGCACGGCCGACC-------------------- | ||
| cjaponica | CTAATTGTTCACGCGGACCCGT--CAGAGCTAGGCAAGATGTTGGCATAGCT-------GAACTAAAACCGCCGGCGTC-----------------------AGGTATCAGCTTCGCCACATTCTGCCAAGCGCTGCACGTTGGCGGTCTCAGAATTGTAAG | ||
| cbrenneri | --------------------GT--TAGAGCTAGGCAAGATGTTGGCATAGCT-------GAATGAAATTCTCGATTATCTCCTTTTTTCGACAAAAGGGAGAGTCACTCAGCTTCGCCACATATTGCCACGCGCTGAT------------------------ | ||
| cremanei | -------------------------------AGGCAAGATGTTGGCATAGCT-------GAATGCAATTT--------------------------------GGCGCTCAGCTCGGCCACATACTGCCA--------------------------------- | ||
| ********************* *** ** *** ******* **** | |||
| celegans | ((((((((( (((.((..((((..((((.(((..(((( ((.............. .....))))))..)))))))..))))..)).))))))...)))))) | 1.000 -43.21 | |
| ppacificus | (((((.....(((.(((.(((...(((.(((((.(((.((..((.........))... )).))).))))))))...))).))).))).))))) | 0.907 -32.50 | |
| cjaponica | ....(((....(((.(((..(( (((.(((.((((..(((.((((..(((( (((((.....((....)).. .))).))))))..)))))))..)))).))).))).))))).)))....)))......... | 0.996 -46.40 | |
| cbrenneri | (( (((.((..(((((.(((.((((..(((( ((.(((............((((((((((.....)))))))))).))).))))))..))))))).)))))..)).))))) | 0.872 -43.82 | |
| cremanei | .((((..(((.((((..(((( ((.(((..... .))).))))))..)))))))..)))). | 1.000 -29.00 |
| celegans | chromosome:II:2452839:2452937:1 | intergenic ## {MIR: cel-mir-72} |
| ppacificus | chromosome:chrUn:125766809:125766901:-1 | Same_strand|Intronic_coding|NM_001122594 |
| cjaponica | chromosome:chrUn:88945962:88946091:1 | intergenic |
| cbrenneri | chromosome:chrUn:87557321:87557429:1 | intergenic |
| cremanei | chromosome:chrUn:30735444:30735582:-1 | Opposite_strand|Intronic_coding|NM_182266 |
©2008 InteRNA Genomics B.V.