cel-mir-73
| absolute | CE1 |
| cel-mir-73 5arm | 1 |
| cel-mir-73 3arm | 814 |
| normalized | CE1 |
| cel-mir-73 5arm | 0.001 |
| cel-mir-73 3arm | 0.569 |
sblock71 (miRBase cel-mir-73) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-73 | 0.006 | no | no | 0.40/0.54 | 19/24/0.99 | 0.0 0.0 | 0.0 0.0 | 1 737 | 0 0 | 1 1 | 0 0 | 22 15 | 0 2 | 5arm 3arm | 1 1 | nd nd | 0.25 0.17 | 2 2 | 815 | 1 | 4 | 2 |
| Located in cluster 8: cel-mir-73, cel-mir-74 |
| Member of family miR-73/74 (seed GGCAAGA): cel-mir-74, cel-mir-72, cel-mir-73 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------GGCAAGA----------------------------------------------- | 795 | miR-73/74 |
| seed | -------------------------------------------------------------------------GCAAGAU---------------------------------------------- | 10 | novel |
| seed | ----------------------------------------------------------------------------AGAUGUA------------------------------------------- | 9 | novel |
| seed | ------------------------GGACUUC----------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-73 | -----------------------------------------------------------------------TGGCAAGATGTAGGCAGTTCAGT-------------------------------- | 23 | 737 |
| -----------------------------------------------------------------------TGGCAAGATGTAGGCAGTTC----------------------------------- | 20 | 24 | |
| -----------------------------------------------------------------------TGGCAAGATGTAGGCAGTTCAG--------------------------------- | 22 | 23 | |
| -----------------------------------------------------------------------TGGCAAGATGTAGGCAGTTCAGTT------------------------------- | 24 | 8 | |
| ---------------------------------------------------------------------------AAGATGTAGGCAGTTCAGT-------------------------------- | 19 | 8 | |
| ------------------------------------------------------------------------GGCAAGATGTAGGCAGTTCAGT-------------------------------- | 22 | 8 | |
| -----------------------------------------------------------------------TGGCAAGATGTAGGCAGTT------------------------------------ | 19 | 3 | |
| ------------------------------------------------------------------------GGCAAGATGTAGGCAGTTCAGTT------------------------------- | 23 | 2 | |
| ---------------------------------------------------------------------------AAGATGTAGGCAGTTCAGTT------------------------------- | 20 | 1 | |
| -----------------------TGGACTTCCATATCGAGCCACAGC------------------------------------------------------------------------------- | 24 | 1 | |
| celegans | CAGTGAG-AGTCCCACACACGACTGGACTTCCATATCGAGCCACAGCT------ATC---AACGAATTTGCTGGCAAGATGTAGGCAGTTCAGTTGTGCGTTTATGGAG----------------- | ||
| cbriggsae | --------GGTCCCTCAAACAACCGAGCTTCCCCGTCAAGCCACAGCT------ATC---TCTGACATTGCTGGCAAGATGTTGGCAGTTCAGTTGTATG---ACGGAGACC-------------- | ||
| cjaponica | GTGTGAGCGGTCCATCGAGCGACCGAACTTCCATATCGAGCC-CAGCCCACTCGACC---AAATAAGACGCTGGCAAGATGTTGGCAGTTCAGTCGCAAG---ATTGTGACCAATACTTGCTCCAC | ||
| cbrenneri | --------GGTCCTTAATACGACTGAGCTTCCACATCAGACCACAGCT------ATTCACAAAAAAAATGCTGGCAAGATGTAGGCAGTTCAGTTGTATG----CGGTGACC-------------- | ||
| cremanei | CAGCGAGAGGTCCCTCAAACGACTGAGCTTCCACGTCAAGCCTCAGCT------ATCGAATGAAAAATTGCTGGCAAGATGTAGGCAGTTCAGTTGTATG----CGGAGACCAATTTCCTG----- | ||
| **** * ** * ***** ** ** **** * * ************* *********** * * * * | |||
| celegans | ....... ..(((.((.((((((((((((.(((((((..((((..((. ... .........))))))..))))).)).)))))))))))).))....))). | 1.000 -35.52 | |
| cbriggsae | (((((((((.(((((.(((((.((.((((..(((..(((. ... .........))))))..))))..)).))))).))))).)) ).)).)))) | 0.916 -34.42 | |
| cjaponica | (((.((((((((((((..(((((.(((((.(((((((..((. ((((....((.... ......)).))))))..))))).)).))))).)))))..) ).)).)))).......))))))) | 0.997 -44.31 | |
| cbrenneri | ((((((..(((((((((((((.(((((((......((((. ...............))))....))))).)).))))))))))))). .)).)))) | 1.000 -36.59 | |
| cremanei | (((.((((((((((.((.(((((((((((.(((((((..(((..(((. ...............))))))..))))).)).))))))))))).)) .)).))))..))))))) | 0.999 -45.19 |
| celegans | chromosome:X:2368759:2368857:1 | intergenic ## {SimpF: WRM0640dB08 1 fosmid,WRM0614bE04 1 fosmid,WRM0611cC07 1 fosmid,WRM0624bG04 1 fosmid,WRM066bF02 1 fosmid,WRM0639bG12 1 fosmid,WRM067cD10 1 fosmid,WRM0612dD05 1 fosmid,WRM0620aG05 1 fosmid,WRM0612dG02 1 fosmid,WRM064dH03 1 fosmid,WRM0617aH11 1 fosmid} ## {MIR: cel-mir-73} |
| cbriggsae | chromosome:chrX:4493864:4493955:-1 | Opposite_strand|Intronic_coding|NM_001087279 ## Same_strand|Intronic_coding|NM_001109816 ## {MIR: cbr-mir-73} |
| cjaponica | chromosome:chrUn:6831545:6831663:1 | intergenic |
| cbrenneri | chromosome:chrUn:1030699:1030792:-1 | intergenic |
| cremanei | chromosome:chrUn:103837693:103837803:-1 | intergenic |
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