cel-mir-65
| absolute | CE1 |
| cel-mir-65 5arm | 1732 |
| cel-mir-65 3arm | 16 |
| normalized | CE1 |
| cel-mir-65 5arm | 1.210 |
| cel-mir-65 3arm | 0.011 |
sblock30 (miRBase cel-mir-65) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-65 | 0.001 | no | no | 0.39/0.64 | 18/23/0.99 | 0.0 0.0 | 0.0 0.0 | 1687 16 | 0 0 | 1 1 | 0 0 | 17 21 | 7 7 | 5arm 3arm | 1 1 | nd nd | 0.24 0.23 | 2 1 | 1748 | 1 | 0 | 2 |
| Located in cluster 3: cel-mir-229, cel-mir-64, cel-mir-65, cel-mir-66 |
| Member of family miR-64 (seed AUGACAC): cel-mir-64, cel-mir-229, cel-mir-65, cel-mir-66, cel-mir-63 |
| reads | miRBase family seed | ||
| seed | --------------------------------------AUGACAC------------------------------------------------------------------------------------------------------- | 1715 | miR-64 |
| seed | ---------------------------------------------------------------------------------------UGCUACG------------------------------------------------------ | 16 | novel |
| seed | ------------------------------------------CACUGAA--------------------------------------------------------------------------------------------------- | 9 | novel |
| seed | ---------------------------------------UGACACU------------------------------------------------------------------------------------------------------ | 8 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------TATGACACTGAAGCGTAA-CCG----------------------------------------------------------------------------------------- | 21 | 1687 | |
| --------------------------------------------------------------------------------------CTGCTACGCGCAGTGCCATGCT---------------------------------------- | 22 | 16 | |
| -------------------------------------TATGACACTGAAGCGTAA-CC------------------------------------------------------------------------------------------ | 20 | 9 | |
| -----------------------------------------ACACTGAAGCGTAA-CCGAA--------------------------------------------------------------------------------------- | 19 | 9 | |
| cel-miR-65 | -------------------------------------TATGACACTGAAGCGTAA-CCGAA--------------------------------------------------------------------------------------- | 23 | 9 |
| --------------------------------------ATGACACTGAAGCGTAA-CCGA---------------------------------------------------------------------------------------- | 21 | 8 | |
| -------------------------------------TATGACACTGAAGCGTAA-CCGA---------------------------------------------------------------------------------------- | 22 | 4 | |
| -------------------------------------TATGACACTGAAGCGTAA--------------------------------------------------------------------------------------------- | 18 | 4 | |
| -------------------------------------TATGACACTGAAGCGTAA-C------------------------------------------------------------------------------------------- | 19 | 2 | |
| celegans | --------------------ATGGAGCCTTCGCCGATTATGACACTGAAGCGTAA-CCGAAC--------ACCATATTTTGAGATTCTGCTACGCGCAGTGCCATGCTCGGCGCGTTGGCTCC-------ATTAAA------------ | ||
| cbriggsae | TAAGGTCC------------TAAAGACCCTCACCAATCATGACACTGAAGCGGGA-ATGGA---AGCGTAGTCAGATTGC-AATTCCTACCGGGTTCAGTGTCATACTTGGTGCG---------------GATGAGTCT--------- | ||
| cbrenneri | --------------------CTGGG--CCTCGCCGATTATGACACTTAAGCATAG-GTGGACCATTCAAGACCATA-----GGATCCAGCTACGCTAAGTGGAATAGTCGGCGAG-TGCCTGG-------AGCA-------------- | ||
| cremanei | CGAGTGCCCCCATACATTAACCAGAGGCCTCGCCGAATATGACACTGACGCTTAATATGGACCGATCTCCCCC--------GGATCCATAAAAGCTCAGTGTCAAACTCGGCGAG-TGCCCCGCCCCCTAATTGTATTCCGCCGTTCG | ||
| * ** ** * ******** * ** * * * * * * **** * * ** * * | |||
| celegans | ((((((((..((((((.((((.(((((..(((((. (.(((. ..((.....))...))).).))))).))))).)))).))))))....)))))) )).... | 1.000 -43.80 | |
| cbriggsae | ........ ...((((((.((((((..(((((((((((.(((.. ..((( (..(((((...))))) ..))))..)))..)))))))))))..)))))).) )....)))) | 0.844 -40.20 | |
| cbrenneri | ((((( (((((((((((((..(((((.(((.((( .((((((............. )).)))).))).))))))))..)))))))))))) .)))))) .... | 1.000 -52.72 | |
| cremanei | ((((((.....(((((.........(((((((((((...(((((((((.((((..(((((((((........) )).)))))).)))))))))))))...)))))))) .)))............))))).....)))))) | 0.983 -54.00 |
| celegans | chromosome:III:2172990:2173089:1 | intergenic ## {MIR: cel-mir-65} |
| cbriggsae | chromosome:chrIII:218507:218613:-1 | Same_strand|Intronic_coding|NM_001102902 ## Opposite_strand|Intronic_coding|NM_001077612 |
| cbrenneri | chromosome:chrUn:131005919:131006016:-1 | intergenic ## {SimpF: trf,trf} |
| cremanei | chromosome:chrUn:10328993:10329131:1 | intergenic |
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