cel-mir-66
| absolute | CE1 |
| cel-mir-66 5arm | 3140 |
| cel-mir-66 3arm | 4 |
| normalized | CE1 |
| cel-mir-66 5arm | 2.194 |
| cel-mir-66 3arm | 0.003 |
sblock31 (miRBase cel-mir-66) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-66 | 0.001 | no | no | 0.38/0.45 | 18/24/0.98 | 0.0 0.8 | 0.0 3.0 | 2870 4 | 0 0 | 1 1 | 0 0 | 16 19 | 2 2 | 5arm 3arm | 1 1 | nd nd | 0.14 0.06 | 1 1 | 3144 | 1 | 0 | 1 |
| Located in cluster 3: cel-mir-229, cel-mir-64, cel-mir-65, cel-mir-66 |
| Member of family miR-64 (seed AUGACAC): cel-mir-64, cel-mir-229, cel-mir-65, cel-mir-66, cel-mir-63 |
| reads | miRBase family seed | ||
| seed | ----------------------------------AUGACAC-------------------------------------------------------------------------------------------- | 3057 | miR-64 |
| seed | -----------------------------------UGACACU------------------------------------------------------------------------------------------- | 39 | novel |
| seed | --------------------------------------CACUGAU---------------------------------------------------------------------------------------- | 38 | novel |
| seed | ------------------------------------GACACUG------------------------------------------------------------------------------------------ | 4 | novel |
| seed | ---------------------------------CAUGACA--------------------------------------------------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------------------------------------------AAAUUCC-------------------------------------------- | 2 | novel |
| seed | -----------------------------------------------------------------------------------AAUUCCU------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------AUUCCUA------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------CATGACACTGATTAG--GGATGTG---------------------------------------------------------------------------- | 22 | 2870 | |
| ---------------------------------CATGACACTGATTAG--GGATGTGA----T---------------------------------------------------------------------- | 24 | 117 | |
| -------------------------------------ACACTGATTAG--GGATGTGA--------------------------------------------------------------------------- | 19 | 35 | |
| ---------------------------------CATGACACTGATTAG--GGAT------------------------------------------------------------------------------- | 19 | 27 | |
| ----------------------------------ATGACACTGATTAG--GGATGTGA--------------------------------------------------------------------------- | 22 | 26 | |
| ---------------------------------CATGACACTGATTAG--GGATGT----------------------------------------------------------------------------- | 21 | 15 | |
| ---------------------------------CATGACACTGATTAG--GGATG------------------------------------------------------------------------------ | 20 | 12 | |
| ----------------------------------ATGACACTGATTAG--GGATGTG---------------------------------------------------------------------------- | 21 | 12 | |
| cel-miR-66 | ---------------------------------CATGACACTGATTAG--GGATGTGA--------------------------------------------------------------------------- | 23 | 9 |
| ---------------------------------CATGACACTGATTAG--GGA-------------------------------------------------------------------------------- | 18 | 7 | |
| -----------------------------------TGACACTGATTAG--GGATGTG---------------------------------------------------------------------------- | 20 | 4 | |
| -------------------------------------ACACTGATTAG--GGATGTG---------------------------------------------------------------------------- | 18 | 2 | |
| ---------------------------------------------------------------------------------CAAATTCCTAACGGTGTCAAAC------------------------------ | 22 | 1 | |
| -------------------------------------ACACTGATTAG--GGATGTGA----T---------------------------------------------------------------------- | 20 | 1 | |
| -----------------------------------------------------------------------------------AATTCCTAACGGTGTCAAAC------------------------------ | 20 | 1 | |
| ----------------------------------------------------------------------------------AAATTCCTAACGGTGTCAAAC------------------------------ | 21 | 1 | |
| --------------------------------ACATGACACTGATTAG--GG--------------------------------------------------------------------------------- | 18 | 1 | |
| ----------------------------------ATGACACTGATTAG--GGATGT----------------------------------------------------------------------------- | 20 | 1 | |
| ---------------------------------------------------------------------------------CAAATTCCTAACGGTGTC---------------------------------- | 18 | 1 | |
| --------------------------------ACATGACACTGATTAG--GGATGTG---------------------------------------------------------------------------- | 23 | 1 | |
| celegans | --------------CCACAAAA---ATGCCATACATGACACTGATTAG--GGATGTGA----TGAATGTTAAGATCCCGATCAAATTCCTAACGGTGTCAAACATGGC---GTATGTGGTTGTAG-------- | ||
| cremanei | ---------------------------------CATGACACACTCTCA--AAGTTGAACAATTTTAACTGAAAAC---GTTCAACCTTTTGAC-CTGTACTGTACAAT------------------------- | ||
| cbrenneri | GGGACCTAGGCCGCCGACAGAACAGGTGCCAACCATGACACTGATAAA--TAGTTTGA----CGCGACAGGAAAT---GATCAAATATTTCTCGGTGTCAAGACTGGCTAGTTCTCTTGGTGTGAGCCGTCCC | ||
| cjaponica | ---------------------------------AATGACACTTTTGCGTCTTGTTTGA----TTTACAACAAAAT-----GCGATGAGTCGTCGTT------------------------------------- | ||
| ppacificus | ----------------TCAGTCCGCTGCCCTTTTATGACACTGACCCCTCAATGCGGATG--TATAACTGGAGAT----ACCGCATTGTGGGCAGTGTCATCCAAGGG-------CTGAGAATGA-------- | ||
| ******* * * * * * * | |||
| celegans | (((((... (((((((...((((((((.(((( ((((.((( (................)))).))))))))))))))))...))))) )).)))))...... | 1.000 -37.49 | |
| cremanei | ..(((((.((..((( (((((((((..((((....)))).. )))))))..))))). ..))..))).)).. | 0.954 -11.10 | |
| cbrenneri | (((((...(((((((((.(((((....((((....(((((((((.((( (.(((((( ((..........) ).)))))))))).)))))))))....))))..))))).))))))...)))))))) | 0.967 -46.50 | |
| cjaponica | ((((((((((((((((.(((((... .....))))).)) )))).)))).)))))) | 1.000 -16.30 | |
| ppacificus | (((.((....((((((..(((((((((.(((..((((((((.(( (..........)) ))))))))).))))))))))))..))))) )...)).))) | 0.997 -44.70 |
| celegans | chromosome:III:2173096:2173194:1 | intergenic ## {MIR: cel-mir-66} |
| cremanei | chromosome:chrUn:140364416:140364554:-1 | Same_strand|Intronic_coding|NM_182407 |
| cbrenneri | chromosome:chrUn:123881332:123881455:1 | intergenic |
| cjaponica | chromosome:chrUn:7639001:7639139:-1 | Opposite_strand|Intronic_coding|NM_001071380 |
| ppacificus | chromosome:chrUn:95556299:95556394:1 | Same_strand|Intronic_coding|NM_175692 |
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