miR-Intess: cel-mir-229

cel-mir-229

Cloning frequencies
absolute	CE1
cel-mir-229 5arm	5010
cel-mir-229 3arm	19
normalized	CE1
cel-mir-229 5arm	3.500
cel-mir-229 3arm	0.013

sblock29 (miRBase cel-mir-229) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-229	0.001	no	no	0.30/0.50	18/28/0.47	0.0 0.0	2.7 0.0	4228 12	0 0	1 1	0 0	7 5	2 20	5arm 3arm	1 1	nd nd	0.15 0.13	1 1	5029	1	3	2

Clusters
Located in cluster 3: cel-mir-229, cel-mir-64, cel-mir-65, cel-mir-66

Families
Member of family miR-64 (seed AUGACAC): cel-mir-64, cel-mir-229, cel-mir-65, cel-mir-66, cel-mir-63

		reads	miRBase family seed
seed	--------AUGACAC----------------------------------------------------------------------------------------------------	4939	miR-64
seed	---------UGACACU---------------------------------------------------------------------------------------------------	48	novel
seed	------------CACUGGU------------------------------------------------------------------------------------------------	20	miR-359
seed	----------------------------------------------------------------------------------------GAAAGGU--------------------	15	novel
seed	---------------------------------------------------------------------------------------AGAAAGG---------------------	3	novel
seed	----------GACACUG--------------------------------------------------------------------------------------------------	2	novel
seed	-------AAUGACA-----------------------------------------------------------------------------------------------------	1	novel
seed	------------------------------------------------------------------------------------------AAGGUAU------------------	1	novel
		len	cloning frequencies
			CE1
cel-miR-229	-------AATGACACTGGTTATCTTTTCCATCG----------------------------------------------------------------------------------	26	1878
	-------AATGACACTGGTTATCTTTT----------------------------------------------------------------------------------------	20	1774
	-------AATGACACTGGTTATCTTTTCCATCGT---------------------------------------------------------------------------------	27	576
	-------AATGACACTGGTTATCTTTTCC--------------------------------------------------------------------------------------	22	454
	-------AATGACACTGGTTATCTTTTCCATC-----------------------------------------------------------------------------------	25	95
	-------AATGACACTGGTTATCTTTTCCA-------------------------------------------------------------------------------------	23	71
	-------AATGACACTGGTTATCTTT-----------------------------------------------------------------------------------------	19	46
	--------ATGACACTGGTTATCTTTTCCATCG----------------------------------------------------------------------------------	25	27
	-------AATGACACTGGTTATCTTTTCCAT------------------------------------------------------------------------------------	24	19
	--------ATGACACTGGTTATCTTTT----------------------------------------------------------------------------------------	19	16
	-------AATGACACTGGTTATCTT------------------------------------------------------------------------------------------	18	12
	---------------------------------------------------------------------------------------AGAAAGGTATCGGGTGTCATAGC-----	23	12
	-------AATGACACTGGTTATCTTTTC---------------------------------------------------------------------------------------	21	10
	-----------ACACTGGTTATCTTTTCCATCG----------------------------------------------------------------------------------	22	10
	-----------ACACTGGTTATCTTTTCCATCGT---------------------------------------------------------------------------------	23	6
	-------AATGACACTGGTTATCTTTTCCATCGTG--------------------------------------------------------------------------------	28	4
	-----------ACACTGGTTATCTTTTCC--------------------------------------------------------------------------------------	18	3
	--------ATGACACTGGTTATCTTTTCC--------------------------------------------------------------------------------------	21	3
	--------------------------------------------------------------------------------------GAGAAAGGTATCGGGTGTCATAGC-----	24	2
	---------TGACACTGGTTATCTTTT----------------------------------------------------------------------------------------	18	2
	--------ATGACACTGGTTATCTTTTCCATCGT---------------------------------------------------------------------------------	26	2
	---------------------------------------------------------------------------------------AGAAAGGTATCGGGTGTCATAG------	22	2
	-----------ACACTGGTTATCTTTTCCA-------------------------------------------------------------------------------------	19	1
	-----------------------------------------------------------------------------------------AAAGGTATCGGGTGTCATAGC-----	21	1
	---------------------------------------------------------------------------------------AGAAAGGTATCGGGTGTC----------	18	1
	------CAATGACACTGGTTATCTTTTC---------------------------------------------------------------------------------------	22	1
	--------------------------------------------------------------------------------------GAGAAAGGTATCGGGTGTCAT--------	21	1
celegans	cgccggcAATGACACTGGTTATCTTTTCCATCGTggaatgccccccattgattttttccccttttcggggggaaaaaattggaaacgagaaaggtatcgggtgtcatagccggcg
	*******************************************************************************************************************
celegans	(((((((.((((((((.(.((((((((...((((((........)).(..((((((((((((.....))))))))))))..)..)))))))))))).).)))))))).)))))))	1.000 -57.80

celegans

chromosome:III:2172440:2172554:1

intergenic ## {MIR: cel-mir-229}

miR-Intess™

cel-mir-229

sblock29 (miRBase cel-mir-229) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]