miR-Intess: cel-mir-64

cel-mir-64

Cloning frequencies
absolute	CE1
cel-mir-64 5arm	3270
normalized	CE1
cel-mir-64 5arm	2.284

block3452 (miRBase cel-mir-64) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-64	0.007	no	no	0.37/0.50	18/26/0.98	0.0	0.0	2959	0	1	0	16	5	5arm	1	nd	0.14	2	3270	1	na	na

Clusters
Located in cluster 3: cel-mir-229, cel-mir-64, cel-mir-65, cel-mir-66

Families
Member of family miR-64 (seed AUGACAC): cel-mir-64, cel-mir-229, cel-mir-65, cel-mir-66, cel-mir-63

		reads	miRBase family seed
seed	-------------------------------------AUGACAC-------------------------------------------------------------------------------------------------	3213	miR-64
seed	-----------------------------------------CACUGAA---------------------------------------------------------------------------------------------	23	novel
seed	--------------------------------------UGACACU------------------------------------------------------------------------------------------------	23	novel
seed	------------------------------------UAUGACA--------------------------------------------------------------------------------------------------	7	novel
seed	-----------------------------------AUAUGAC---------------------------------------------------------------------------------------------------	3	novel
seed	------------------------------------------ACUGAAG--------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------TATGACACTGAAGCGTT-ACCG-----------------------------------------------------------------------------------	21	2959
cel-miR-64	------------------------------------TATGACACTGAAGCGTT-ACCGAA---------------------------------------------------------------------------------	23	146
	------------------------------------TATGACACTGAAGCGTT-ACCGA----------------------------------------------------------------------------------	22	47
	------------------------------------TATGACACTGAAGCGTT-A--------------------------------------------------------------------------------------	18	23
	------------------------------------TATGACACTGAAGCGTT-ACC------------------------------------------------------------------------------------	20	23
	----------------------------------------ACACTGAAGCGTT-ACCGAA---------------------------------------------------------------------------------	19	23
	-------------------------------------ATGACACTGAAGCGTT-ACCGA----------------------------------------------------------------------------------	21	18
	------------------------------------TATGACACTGAAGCGTT-AC-------------------------------------------------------------------------------------	19	7
	-----------------------------------ATATGACACTGAAGCGTT----------------------------------------------------------------------------------------	18	5
	------------------------------------TATGACACTGAAGCGTT-ACCGAACC-------------------------------------------------------------------------------	25	4
	-------------------------------------ATGACACTGAAGCGTT-ACCGAA---------------------------------------------------------------------------------	22	3
	------------------------------------TATGACACTGAAGCGTT-ACCGAACCG------------------------------------------------------------------------------	26	3
	-----------------------------------ATATGACACTGAAGCGTT-ACCG-----------------------------------------------------------------------------------	22	2
	----------------------------------AATATGACACTGAAGCGTT-ACCG-----------------------------------------------------------------------------------	23	2
	-------------------------------------ATGACACTGAAGCGTT-ACCG-----------------------------------------------------------------------------------	20	1
	-------------------------------------ATGACACTGAAGCGTT-ACC------------------------------------------------------------------------------------	19	1
	----------------------------------AATATGACACTGAAGCGTT----------------------------------------------------------------------------------------	19	1
	------------------------------------TATGACACTGAAGCGTT-ACCGAAC--------------------------------------------------------------------------------	24	1
	-----------------------------------------CACTGAAGCGTT-ACCGAA---------------------------------------------------------------------------------	18	1
celegans	----------CGCT----------GACCTCGCCGAATATGACACTGAAGCGTT-ACCGAACCGTTTTCCCACAC--CTGGATTCGGTGCAACGATCAGTGGCATGCTCGGCTAGCGCCAGT--------------------
cremanei	------------------------------------CATGACACTCAAGCATACCATGGACTGACTTTCAG-----CAGAATCCA------------------TGTATGGTTAGTGTTATC--------------------
cbriggsae	---CAAGAATCCTC----------GGCCTCGCCGACCATGACACTGAAGCGTG-TACGGATGGAAAGTTGAAGCCTTCCGTTCCGCTAGTGTGCCATGCAA------CGGCGAGTGCCTTGGCACTTTG------------
cbrenneri	GTCCGATATTCTTTCCCCTCTTCGGGCCTCGCCGATTATGACACTTATGCATA-GGTGGACCA---TTCAAGACCATAGGATCCA--GCTACGCTAAGTGGAATAGTCGGCGAGTGCCTGAAGTATTTTCTAGTATTCTGC
	******** * ** * * * * * *
celegans	.((( (..((.(((((.((((.((((((..(((( (((((((((........... .))).)))))))..))).)))))).)))).))))).))...))))	1.000 -37.00
cremanei	.((((((((.((.((((.(((((((((........ )))..)))) )))))).)))))))))).	1.000 -21.80
cbriggsae	((((...((.. ((((((((((..((((.(((...((((.. .(((((.((..........)).)))))..))))...))).))))... ))))))).)))..))...))))	0.997 -43.70
cbrenneri	((..((((((.........((((((((((((((((((((..((((((.((.(( (.((((((. ............)).)))) .))).))))))))..)))))))))))).))))))))........))))))..))	0.980 -58.75

celegans	chromosome:III:2172841:2172938:1	intergenic ## {MIR: cel-mir-64}
cremanei	chromosome:chrUn:10328890:10329027:1	intergenic
cbriggsae	chromosome:chrIII:218903:219011:-1	Same_strand\|Intronic_coding\|NM_001102902 ## Opposite_strand\|Intronic_coding\|NM_001077612 ## {MIR: cbr-mir-64}
cbrenneri	chromosome:chrUn:131006152:131006286:-1	intergenic ## {SimpF: trf}

miR-Intess™

cel-mir-64

block3452 (miRBase cel-mir-64) [miRNAknown_cloningHIGH_randfoldOK]