cel-mir-63
| absolute | CE1 |
| cel-mir-63 5arm | 17 |
| cel-mir-63 3arm | 155 |
| normalized | CE1 |
| cel-mir-63 5arm | 0.012 |
| cel-mir-63 3arm | 0.108 |
sblock70 (miRBase cel-mir-63) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-63 | 0.001 | no | no | 0.42/0.50 | 18/24/0.98 | 0.0 0.0 | 0.0 0.0 | 15 142 | 0 0 | 1 1 | 0 0 | 16 18 | 3 7 | 5arm 3arm | 1 1 | nd nd | 0.09 0.10 | 1 2 | 172 | 1 | 2 | -1 |
| Member of family miR-64 (seed AUGACAC): cel-mir-64, cel-mir-229, cel-mir-65, cel-mir-66, cel-mir-63 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------AUGACAC-------------------------------------------------- | 152 | miR-64 |
| seed | --------------------------------------CUAACUC------------------------------------------------------------------------------------------------ | 16 | novel |
| seed | ----------------------------------------------------------------------------------------CACUGAA---------------------------------------------- | 2 | novel |
| seed | ---------------------------------------UAACUCG----------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------------------UGACACU------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------------TATGACACTGAAGCGAGTT------------------GG------------------- | 21 | 142 | |
| -------------------------------------TCTAACTCGTCGGTAGTCATCGT--------------------------------------------------------------------------------- | 23 | 15 | |
| -----------------------------------------------------------------------------------TATGACACTGAAGCGAGT---------------------------------------- | 18 | 4 | |
| cel-miR-63 | -----------------------------------------------------------------------------------TATGACACTGAAGCGAGTT------------------GGAAA---------------- | 24 | 3 |
| -----------------------------------------------------------------------------------TATGACACTGAAGCGAGTT------------------G-------------------- | 20 | 3 | |
| ---------------------------------------------------------------------------------------ACACTGAAGCGAGTT------------------GGAAA---------------- | 20 | 2 | |
| --------------------------------------CTAACTCGTCGGTAGTCATCGT--------------------------------------------------------------------------------- | 22 | 1 | |
| ------------------------------------------------------------------------------------ATGACACTGAAGCGAGTT------------------GGA------------------ | 21 | 1 | |
| -------------------------------------TCTAACTCGTCGGTAGTCATCG---------------------------------------------------------------------------------- | 22 | 1 | |
| celegans | --------------------ACAAGCAGACA-CAATTTCTAACTCGTCGGTAGTCATCGTTC-----TAGCTGAAAAGGACACTATGACACTGAAGCGAGTT------------------GGAAATAGTGGTTCTACTTG- | ||
| cbrenneri | --------------------TCTCTGGGACA-CCGTTTTCAACTCGTCGGTAGTCATTGTTC----GGACCAGGAAATGAAACTATGACACTGAAGCGAGTT------------------GGAAATGGTGGTTCTGTGAGA | ||
| ppacificus | CTCTCTCTCCCCTCTAATCCCCCCTTAGCCGTCCCTTCTCGGCT--TTGGTTGTCATTGTCT------ACTTGAAGA--GAACTATGACACTGAAGCGAGATGGTACGGCGAGGGGAGGAGGAAGAGGGAGGGCAGAGAG- | ||
| cremanei | ----------------------CAGAAAACATCCACTTCTAACTCGTCGGTAGTCATTGTTTCCATAAACCAGGAAGTGAAACTATGACACTGAAGCGAGTT------------------AGAAATGGTGATTCTG----- | ||
| * * * ** * *** ***** ** * * * ******************* * *** * * | |||
| celegans | .((((.((((( (.(((((((((((((((((.(((((.(((( (........)))))...)))))))))..))))))) )))))).)))..))).)))) | 1.000 -36.90 | |
| cbrenneri | ((((((((((( (((((((((((((((((((.(((((..((( (..........))))...)))))))))..))))))) )))))))))).))))).)))) | 1.000 -43.00 | |
| ppacificus | (((((((((((((((..(((((((((.(((((.((.((((.((( (..((.(((((..((( ........) ))...)))))))..)))))))).)).))))))))))).)))...)))))).))).)))))) | 1.000 -73.20 | |
| cremanei | (((((..((.(((.(((((((((((((((.(((((.(((((...............))))).)))))))))..))))))) )))).))))).))))) | 0.999 -35.36 |
| celegans | chromosome:X:17598683:17598778:-1 | intergenic ## {SimpF: WRM0624aB04 -1 fosmid,WRM0624aH07 -1 fosmid,WRM0610bF09 -1 fosmid,WRM0624cG03 -1 fosmid,WRM0627bD03 -1 fosmid} ## {MIR: cel-mir-63} |
| cbrenneri | chromosome:chrUn:21294851:21294948:1 | intergenic |
| ppacificus | chromosome:chrUn:95313911:95314040:-1 | Same_strand|Intronic_coding|NM_117511 ## Opposite_strand|Intronic_coding|NM_175692 |
| cremanei | chromosome:chrUn:15081192:15081287:1 | Opposite_strand|Intronic_coding|NM_057976 |
©2008 InteRNA Genomics B.V.