cel-mir-37
| absolute | CE1 |
| cel-mir-37 5arm | 5 |
| cel-mir-37 3arm | 1975 |
| normalized | CE1 |
| cel-mir-37 5arm | 0.003 |
| cel-mir-37 3arm | 1.380 |
sblock20 (miRBase cel-mir-37) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-37 | 0.001 | no | no | 0.52/0.67 | 18/23/0.97 | 0.8 0.0 | 0.4 0.0 | 5 1791 | 0 0 | 1 1 | 0 0 | 18 16 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.26 0.27 | 3 2 | 1980 | 1 | 1 | 2 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------CACCGGG----------------------------------------------- | 1942 | miR-35/36/38/39/40/41 |
| seed | ---------------------------------------------------------------------------ACCGGGU---------------------------------------------- | 18 | miR-42 |
| seed | ------------------------------------------------------------------------------GGGUGAA------------------------------------------- | 13 | novel |
| seed | -----------------------------GUGGGUG-------------------------------------------------------------------------------------------- | 4 | novel |
| seed | -------------------------------------------------------------------------UCACCGG------------------------------------------------ | 2 | novel |
| seed | ---------------------------------GUG----UCCG------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-37 | -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCAGT----------------------------- | 22 | 1791 |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCAG------------------------------ | 21 | 97 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGC-------------------------------- | 19 | 36 | |
| --------------------------------------------------------------------------CACCGGGTGAA----CACTTGCAGT----------------------------- | 21 | 16 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCAGTG---------------------------- | 23 | 15 | |
| -----------------------------------------------------------------------------CGGGTGAA----CACTTGCAGT----------------------------- | 18 | 13 | |
| ----------------------------TGTGGGTG----TCCGTTGCGGTGCT-------------------------------------------------------------------------- | 22 | 3 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCA------------------------------- | 20 | 2 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTG--------------------------------- | 18 | 1 | |
| ------------------------------------------------------------------------ATCACCGGGTGAA----CACTTGCAG------------------------------ | 22 | 1 | |
| --------------------------------------------------------------------------CACCGGGTGAA----CACTTGCAG------------------------------ | 20 | 1 | |
| ----------------------------TGTGGGTG----TCCGTTGCGGTGC--------------------------------------------------------------------------- | 21 | 1 | |
| ------------------------------------------------------------------------ATCACCGGGTGAA----CACTTGCAGT----------------------------- | 23 | 1 | |
| --------------------------------GGTG----TCCGTTGCGGTGCTA------------------------------------------------------------------------- | 19 | 1 | |
| --------------------------------------------------------------------------CACCGGGTGAA----CACTTGC-------------------------------- | 18 | 1 | |
| celegans | ----------TAGAAACCCTTGGACCAGTGTGGGTG----TCCGTTGCGGTGCTACA-TTCT-CTAATCTGTATCACCGGGTGAA----CACTTGCAGTGGTCCT-----------CGTGGTTTCT-- | ||
| cremanei | TCCGATTGGTTGAAAGAGCCAGAACCTATACCGGTTTAACTTCGTGGTGATATGACACATATTACATTCTTTATCACCGGGAGTA---AAACTGGTATAGGATCTGCGACTCGCTGATTGGA------ | ||
| cbriggsae | -CCATTCCAATTGAAACCTTCGGACCATTGTGAATT----TTTGCTGCGGTGTTACA--ACT-AACATCTGTATCACCGGGTGAA----AATTCGCAATGGTCCGATGGGTATTCATGTGGAGCCTGG | ||
| cbrenneri | -------GGCCGGA-----TCGGACCTATGCTGGTT----TTCACCGCGGT--TATACTTCTAACAATAATTATCACCGGGTTAA----AACTTGCAGAGGTCCG----------GTCCGGCC----- | ||
| cjaponica | -------GTCCAGAA----TTAGACACTGGCTGGTA----TCCGCGATGGTGTTACACTACT-GTAA--TGTATCACCGGGTGGA----AACTTGCAAGTGTCTC---------CAACTGGAT----- | ||
| ppacificus | ---------TCTGAGTCCCTTCGATCGCCTCTGATC-------ACTACGATGAAACTGAGATAACGA--GTTTTCACCGGGTGAACAGAAGCTGTTGAAGAT--------------ATCGGA------ | ||
| * * * * * * * * ******** * * ** | |||
| ----- -------------------------- ----------------- ---- ---------------------- ---------------- ---------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | .(((((((...((((((.((..(((( (.((...(((((.(((( .... ......)))).)))))..)).) ))))..)).)))))). ...))))))) | 1.000 -43.40 | |
| cremanei | ((((((..((.....(((.((((.(((((((((((((.(((((.((((((((...................))))))))))))). ))))))))))))).))))...)))))..)))))) | 1.000 -51.31 | |
| cbriggsae | ((((((((..((((((((((((((((((((((((( ((..((.(((((.(((( ... ......)))).)))))))..)) ))))))))))))))))).)))).))))..)))))..))) | 1.000 -60.30 | |
| cbrenneri | ((((((( ((((((((.(((.(((( ((.(((.(((( .(((.((........)).))).))))))).)) )))).))).))))))) )))))))) | 1.000 -51.90 | |
| cjaponica | ((((((.. ..(((((((.((.(((. (((((..(((((.((((..... .... )))).))))).))))) .))).)).))))))). ...)))))) | 1.000 -40.00 | |
| ppacificus | (((((....(((((((.((.((((.(( (((.((.(((((((.........) )))).)).))))))).)))).)).))))))).. .))))) | 1.000 -30.60 |
| celegans | chromosome:II:11537752:11537846:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {MIR: cel-mir-37} |
| cremanei | chromosome:chrUn:8778754:8778872:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
| cbriggsae | chromosome:chrII:7535760:7535875:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## {MIR: cbr-mir-36} |
| cbrenneri | chromosome:chrUn:47823952:47824042:-1 | intergenic |
| cjaponica | chromosome:chrUn:117591227:117591318:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| ppacificus | chromosome:chrUn:171595123:171595212:-1 | intergenic ## {Repeats: (GA)n 2 38 -1 class=Simple_repeat} ## {SimpF: trf} |
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