cel-mir-36
| absolute | CE1 |
| cel-mir-36 5arm | 10 |
| cel-mir-36 3arm | 100 |
| normalized | CE1 |
| cel-mir-36 5arm | 0.007 |
| cel-mir-36 3arm | 0.070 |
sblock19 (miRBase cel-mir-36) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-36 | 0.001 | no | no | 0.48/0.53 | 19/23/0.87 | 0.0 0.0 | 0.0 0.2 | 8 83 | 0 0 | 1 1 | 0 0 | 19 15 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.18 0.14 | 2 1 | 110 | 1 | 1 | 2 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------CACCGGG-------------------------------------------------- | 99 | miR-35/36/38/39/40/41 |
| seed | --------------------------------GCCAA-UU--------------------------------------------------------------------------------------------- | 10 | novel |
| seed | -----------------------------------------------------------------------------ACCGGGU------------------------------------------------- | 1 | miR-42 |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-36 | ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCATG------------------------------- | 22 | 63 |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCAT-------------------------------- | 21 | 20 | |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGC---------------------------------- | 19 | 14 | |
| -------------------------------CGCCAA-TTTTCGCTTCAGTGCT------------------------------------------------------------------------------- | 22 | 8 | |
| -------------------------------CGCCAA-TTTTCGCTTCAGTGC-------------------------------------------------------------------------------- | 21 | 2 | |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCA--------------------------------- | 20 | 1 | |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCATGG------------------------------ | 23 | 1 | |
| ----------------------------------------------------------------------------CACCGGGTGAAAA-----TTCGCATG------------------------------- | 21 | 1 | |
| celegans | ------CACCGCTGTCGGGG------AACCGCGCCAA-TTTTCGCTTCAGTGCTAGACCATCCAAAGTGTC--TATCACCGGGTGAAAA-----TTCGCATGGGTCCCCGACGCGGA---------------- | ||
| cremanei | GAAAGGTAAGTTTAACAGGTCCCCATGACCTTGGTAGTTTTCCGCCGCAGTGATATACCATCAATCAAAACGATATCACCGGGTGAAAAACTACCAAGGTCGGGTCACCTGTCCTTTT--------------- | ||
| cbriggsae | -----CCATTCCAATTGAAACCTTCGGACCATTGTGAATTTTTGCTGCGGTGTTACAAC-----TAACATCTGTATCACCGGGTGAAAA-----TTCGCAATGGT--CCGATGGGTATTCATGTGGAGCCTGG | ||
| cjaponica | --------ACCATGACGGG-------AACCGCGCTGG-TTTCTACCGCAGTGATACGCAATCAACAAGTCCTCTATCACCGGGTGGAAA-----CTAGCTCGGGTCCCCGATTGGT----------------- | ||
| cbrenneri | ---------TTGCGTAGGGG------AACCAAGCTAG-TTCTTACCGCGGTGCTACAACAAGCATAACATC--TAACACCGGGTAAAAA-----CTAGCTCGGGTCCCCCTTGCAA----------------- | ||
| *** ** * * *** ** * ** ******** *** * *** ** | |||
| ----- -------------- ----------- --------------------------------- ---------------- ----------------------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | ..((((.((((((( (.(((.((.(( (((((((((..(((.((((((.......).))) )).))).))))))))) )).)).))).)))))))))))). | 1.000 -50.30 | |
| cremanei | ((((((........((((((..((.((((((((((((((((.((((...(((((((................)))))))..)))).))))))))))))))))))..)))))))))))) | 0.997 -51.19 | |
| cbriggsae | ((((((((..(((((((((((((((((((((((((((..((.(((((.((((.. .......)))).)))))))..)))) ))))))))))) )))).)))).))))..)))))..))) | 1.000 -60.30 | |
| cjaponica | ((((....((( (.(((.((((( ((((((((...((((((..................))))))..)))))))) ))))).))).))))....)))) | 0.994 -41.87 | |
| cbrenneri | .((((..(((( (.((.(((((( ((.(((((.(((((................... ...)))))))))).)) )))))).)).)))))..)))). | 0.969 -43.35 |
| celegans | chromosome:II:11537629:11537725:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {MIR: cel-mir-36} |
| cremanei | chromosome:chrUn:8778361:8778478:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
| cbriggsae | chromosome:chrII:7535760:7535875:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## {MIR: cbr-mir-36} |
| cjaponica | chromosome:chrUn:117591915:117592009:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613587:41613679:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
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