cel-mir-39
| absolute | CE1 |
| cel-mir-39 5arm | 10 |
| cel-mir-39 3arm | 3387 |
| normalized | CE1 |
| cel-mir-39 5arm | 0.007 |
| cel-mir-39 3arm | 2.366 |
sblock21 (miRBase cel-mir-39) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-39 | 0.001 | no | no | 0.38/0.53 | 18/23/0.99 | 0.0 0.0 | 0.0 0.0 | 10 3177 | 0 0 | 1 1 | 0 0 | 14 11 | 7 8 | 5arm 3arm | 1 1 | nd nd | 0.10 0.14 | 1 1 | 3397 | 1 | 1 | 2 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------CACCGGG-------------------------------- | 3352 | miR-35/36/38/39/40/41 |
| seed | ---------------------------------------------------------------ACCGGGU------------------------------- | 19 | miR-42 |
| seed | ------------------------------------------------------------------GGGUGUA---------------------------- | 15 | novel |
| seed | -------------------GCU--GAUU------------------------------------------------------------------------- | 10 | novel |
| seed | -----------------------------------------------------------------CGGGUGU----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-39 | -------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG------------------ | 22 | 3177 |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGCTT------------------- | 21 | 100 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG----------------- | 23 | 51 | |
| --------------------------------------------------------------CACCGGGTGTAAATCAGCTTG------------------ | 21 | 19 | |
| -----------------------------------------------------------------CGGGTGTAAATCAGCTTG------------------ | 18 | 15 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGC--------------------- | 19 | 11 | |
| ------------------AGCT--GATTTCGTCTTGGTAAT------------------------------------------------------------ | 21 | 10 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGCT-------------------- | 20 | 7 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAG---------------------- | 18 | 6 | |
| ----------------------------------------------------------------CCGGGTGTAAATCAGCTTG------------------ | 19 | 1 | |
| celegans | ----TATACCGAGAGCCCAGCT--GATTTCGTCTTGGTAAT-AAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTC------- | ||
| cbriggsae | CAGAGATGCAGGGAGCCCAACT-GGTTCTCACTGCAGTGAT-AAGCT-ATGTTACAGTCTATCACCGGGTGAAAAACGGTTAGGCTCTTTAAGCATCTCTG | ||
| cjaponica | --TCGAGCCCGGGACCCCAGCTAGGTGCTCACCGCAGTGAT-ACGCCCTTGT----CGTTATCACCGGGTGAAAATCAGCTAGGGTCCCGTGGA---TCGA | ||
| cbrenneri | ----------------CTAGCT-GATTTCAACCACGGTAAT-AAGCTCCATAGATAGCCTATCACCGGGTGGAAATCAGTTAG------------------ | ||
| ppacificus | ------TCTGAGTCCCTTCGATCGCCTCTGATCACTACGATGAAACTGAGATAACGAGTTTTCACCGGGTGAACAGAAGCTG-----TTGAAGATATCGGA | ||
| cremanei | --GAGATCCAGAGAGCCCAACT-GTTTCTTTCCCCGGTAAT-AAACTTCAACAC--GACTATCACCGGGTATGAATCAGTTAGGCTCTTCTGGTATCTT-- | ||
| * ** * * * ********* * * * | |||
| ----- ------------------ ----------------- ---------------------------------------------------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | .(((((.((((((.(((( (((((((.((((((.(( ((.((((....)))).)))).)))))))).))))))))).))))))))))). | 1.000 -43.30 | |
| cbriggsae | (((((((((((((((((.(((( (.((.(((((...((((( (..(( .......))..))))))..))))).)).))))).))))))))..))))))))) | 1.000 -45.00 | |
| cjaponica | ((((.((((((((((.((((.(((..(((((...((((( (((....... ))).)))))..)))))..))))))).)))))))).)). )))) | 1.000 -46.90 | |
| cbrenneri | (((((( ((((((.(((.((((.(( (.(((........))).))).))))))).)))))))))))) | 1.000 -29.70 | |
| ppacificus | (((((....(((((((.((.((((.(((((.((.(((((((.........))))).)).))))))).)))).)).) ))))))...))))) | 1.000 -30.60 | |
| cremanei | (((((((((((((((.(((( (.(((....((((((.(( (........... ...))).))))))...))).))))).)))))).)))).))))) | 1.000 -39.74 |
| celegans | chromosome:II:11538005:11538091:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {SimpF: Y62F5A.D 1 Expression_profile} ## {MIR: cel-mir-39} |
| cbriggsae | chromosome:chrII:7536042:7536139:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## {MIR: cbr-mir-39} |
| cjaponica | chromosome:chrUn:117591560:117591650:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613238:41613364:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
| ppacificus | chromosome:chrUn:171595123:171595212:-1 | intergenic ## {Repeats: (GA)n 2 38 -1 class=Simple_repeat} ## {SimpF: trf} |
| cremanei | chromosome:chrUn:8778591:8778683:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
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