cel-mir-35
| absolute | CE1 |
| cel-mir-35 5arm | 1 |
| cel-mir-35 3arm | 1568 |
| normalized | CE1 |
| cel-mir-35 5arm | 0.001 |
| cel-mir-35 3arm | 1.095 |
sblock18 (miRBase cel-mir-35) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-35 | 0.001 | no | no | 0.48/0.60 | 18/26/0.96 | 0.0 0.0 | 0.0 0.0 | 1 1332 | 0 0 | 1 1 | 0 0 | 20 15 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.13 0.09 | 1 1 | 1569 | 1 | 1 | 1 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------CACCGGG---------------------------------------------------- | 1540 | miR-35/36/38/39/40/41 |
| seed | -------------------------------------------------------------------------------------ACCGGGU--------------------------------------------------- | 18 | miR-42 |
| seed | ----------------------------------------------------------------------------------------GGGUGGA------------------------------------------------ | 8 | novel |
| seed | --------------------------------------------------------------------------------CUAUCAC-------------------------------------------------------- | 2 | novel |
| seed | -------------------------------------UGCUGGU--------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-35 | -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT-------------------------------------- | 22 | 1332 |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCAG--------------------------------------- | 21 | 135 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGC----------------------------------------- | 19 | 53 | |
| ------------------------------------------------------------------------------------CACCGGGTGGAAACTAGCAGT-------------------------------------- | 21 | 15 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG------------------------------------- | 23 | 14 | |
| ---------------------------------------------------------------------------------------CGGGTGGAAACTAGCAGT-------------------------------------- | 18 | 8 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAG------------------------------------------ | 18 | 3 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCA---------------------------------------- | 20 | 3 | |
| ------------------------------------------------------------------------------------CACCGGGTGGAAACTAGCA---------------------------------------- | 19 | 2 | |
| -------------------------------------------------------------------------A------CTATCACCGGGTGGAAACTAGCAGT-------------------------------------- | 26 | 2 | |
| ------------------------------------------------------------------------------------CACCGGGTGGAAACTAGCAG--------------------------------------- | 20 | 1 | |
| ------------------------------------TTGCTGGTTTCTTCCACAGTGGT------------------------------------------------------------------------------------ | 23 | 1 | |
| celegans | ----------------TCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCC-ATTAGAA------CTATCACCGGGTGGAAACTAGCAGTGGCTC---GAT--------CTT----TTCC-------- | ||
| cremanei | --TCCTGCTACTTTATTCCCTGACGAGG--GGAACCGTGCTGGTTTCGACCTCGGTAATAGGTCCATATATGAGAAGAACCTATCACCGGGTGGAAACTGGTACGGGTCCCCGAGT--------CAGTCTATTTCGAAAAGGA | ||
| cbriggsae | -----------------GATAGCTTGGATCGGACCTCTGCTGGTTTCTGCCGCAGTGATATTCCAACGTAGTGG------TTATCACCGGGTGAAAACTGGTAGAGGTCC---GAT--------CCAGACAAGTC-------- | ||
| cjaponica | GATATTCTTGCT-----CTTTCTCCAGCTCGGACCTCCGCTGGTTTCT-TTTCGTTGATACGATTTTAATCATG------TTATCACCGGGTTGAAACTGGTAGAGGTCC---GACGCTGGAGGCCTCTCATATC-------- | ||
| cbrenneri | ------CCTGCTATATTCGTCGACTGGACCGGACCTCTGCCAGTTTTTACCGCTGTGATACTCCAA-GAGACGG------TTATCACCGGGTGAAAATTGGTAGAGGTCC---GGT--------CC-----TTTC-------- | ||
| * * * ** **** * * ** *********** *** * * * ** * * * | |||
| ----- -------------------------------------------------- ------- ------------------------------ --- --- ---- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | ....(((..(((((((((((((((((((((((.((.(.((((((.(((.. ....))) .)))))).))).)))))))))))))))))) ))) )). .))) | 1.000 -54.30 | |
| cremanei | ((((.............(((((..(( (((.((((((..(((((.(((.((((.((((((...............)))))).))))))).)))))..)))))).)))))..)) )))............)))) | 0.935 -61.87 | |
| cbriggsae | ......(((((((((((((((((..((((..(((...((((((..(((......))) .))))))..)))..))))..)))))))))) ))) ))))....... | 0.994 -54.30 | |
| cjaponica | ............ ...(((((((((((((((((..((((((((. .((((.(((((.(((....)))... .))))).))))..))))))))..))))))) )).))))))))........... | 0.974 -52.40 | |
| cbrenneri | ...............((..((((((((((((((((((((((((((...((((((..((.. .....)) .))))))..))))))))))))))))))))) ))) )) ..)) | 0.962 -58.20 |
| celegans | chromosome:II:11537524:11537620:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {MIR: cel-mir-35} |
| cremanei | chromosome:chrUn:26789042:26789172:-1 | intergenic |
| cbriggsae | chromosome:chrX:15333874:15333974:1 | intergenic |
| cjaponica | chromosome:chrUn:117592041:117592160:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613691:41613796:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
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