cel-mir-41
| absolute | CE1 |
| cel-mir-41 5arm | 4 |
| cel-mir-41 3arm | 8 |
| normalized | CE1 |
| cel-mir-41 5arm | 0.003 |
| cel-mir-41 3arm | 0.006 |
sblock22 (miRBase cel-mir-41) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-41 | 0.001 | no | no | 0.45/0.50 | 20/24/1.00 | 0.0 0.0 | 1.0 0.0 | 4 7 | 0 0 | 1 1 | 0 0 | 16 16 | 0 3 | 5arm 3arm | 1 1 | nd nd | 0.09 0.10 | 2 1 | 12 | 1 | 3 | 1 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------CACCGGG--------------------------------------------- | 8 | miR-35/36/38/39/40/41 |
| seed | -------------------------------------GUGGUUU------------------------------------------------------------------------------------------------- | 4 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------------------TCACCGGGTGAAAAATCACCT-------------------------------- | 21 | 7 | |
| ------------------------------------GGTGGTTTTTCTCTGCAGTGAT----------------------------------------------------------------------------------- | 22 | 2 | |
| ------------------------------------GGTGGTTTTTCTCTGCAGTG------------------------------------------------------------------------------------- | 20 | 1 | |
| ------------------------------------GGTGGTTTTTCTCTGCAGTGATA--------G------------------------------------------------------------------------- | 24 | 1 | |
| cel-miR-41 | ----------------------------------------------------------------------------------------TCACCGGGTGAAAAATCACCTA------------------------------- | 22 | 1 |
| celegans | -----------------GGGTCCCAGA---GACCTTGGTGGTTTTTCTCTGCAGTGATA--------GATACTTCTAACAACTCGCTATCACCGGGTGAAAAATCACCTAGGTCTGGAGCCTCCT---------------- | ||
| cbriggsae | -------------------GTCCCAAA---TGCCTTGGTGGTTTTTCGCCGTAGTGATA--------CAACATCGAAGCCATACGATATCACCGGGTGAAAAACTCCCAAGGTCGGGAC---------------------- | ||
| cjaponica | -------------------GTCCAGAATTAGACACTGGCTGGTATCCGCGATGGTGTTA--------CACTACTGTAAT------GTATCACCGGGTGGAAACTTGCAAGTGTCTCCAACTGGAT---------------- | ||
| cbrenneri | TGGAAGGTGAGTTTAGCAGGTCTTGT----GACCTCGGTGGTTTCTTGCCGCGGTGATATGCACATTCACTTCCATAAT----TGATATCACCGGGTGAAAAATCACCAAGGTCGACGATTCTGTTCTATTTTTTCTCGCA | ||
| cremanei | -GAAAGGTAAGTTTAACAGGTCCCCAT---GACCTTGGTAGTTTTCCGCCGCAGTGATA--------TACCATCA-ATCAAAACGATATCACCGGGTGAAAAACTACCAAGGTCGGGTCACCTGTCCTTTT---------- | ||
| *** * ** * * * *** ** * * ************ *** * *** | |||
| ----- ---------- ----------------------------- ---------------------------------------------------------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | ((.(((...( (((((.(((((((((((((((..(((((( (.................))))))))))).))))))))))).))))))))).)).... | 1.000 -40.93 | |
| cbriggsae | (((((... .(((((((..((((((((((...(((((( .....(((........)))))))))..))))))))))..))))))).))))) | 0.990 -40.50 | |
| cjaponica | ((((((....(((((((.((.(((.(((((..(((((.(( ((.........) ))).))))).))))).))).)).)))))))....)))))) | 1.000 -40.00 | |
| cbrenneri | ......(((((...((((((..(((( (((((.((((((((.(((((.(((((((((.((................ )))))))))))))))).)))))))).))))).)))).)))))).........))))). | 0.999 -48.79 | |
| cremanei | ((((((........((((((..((.( (((((((((((((((.((((...(((((( (....... .........)))))))..)))).))))))))))))))))))..)))))))))))) | 0.997 -51.19 |
| celegans | chromosome:II:11538224:11538320:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {SimpF: Y62F5A.D 1 Expression_profile} ## {MIR: cel-mir-41} |
| cbriggsae | chromosome:chrII:7536503:7536591:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## Opposite_strand|Boundary_coding|NM_171042 ## {MIR: cbr-mir-41} |
| cjaponica | chromosome:chrUn:117591227:117591318:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613113:41613245:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
| cremanei | chromosome:chrUn:8778361:8778478:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
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