cel-mir-250
| absolute | CE1 |
| cel-mir-250 5arm | 5 |
| cel-mir-250 3arm | 397 |
| normalized | CE1 |
| cel-mir-250 5arm | 0.003 |
| cel-mir-250 3arm | 0.277 |
sblock56 (miRBase cel-mir-250) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-250 | 0.001 | no | no | 0.41/0.59 | 19/23/1.00 | 0.0 0.0 | 0.4 0.0 | 5 297 | 0 0 | 1 1 | 0 0 | 16 16 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.23 0.20 | 2 2 | 402 | 1 | 2 | 1 |
| Located in cluster 6: cel-mir-250, cel-mir-61 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------AUCACAG----------------------------------------------- | 393 | miR-43 |
| seed | ------------------------------CUUCAGU----------------------------------------------------------------------------------------- | 5 | novel |
| seed | -------------------------------------------------------------------------UCACAGU---------------------------------------------- | 4 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------AATCACAGTCAACTGTTGGC----------------------------------- | 20 | 297 | |
| -----------------------------------------------------------------------AATCACAGTCAACTGTTGGCAT--------------------------------- | 22 | 88 | |
| -----------------------------------------------------------------------AATCACAGTCAACTGTTGGCATG-------------------------------- | 23 | 5 | |
| -----------------------------CCTTCAGTTGCCTCGTGATCCG--------------------------------------------------------------------------- | 22 | 3 | |
| cel-miR-250 | -----------------------------------------------------------------------AATCACAGTCAACTGTTGGCA---------------------------------- | 21 | 3 |
| -----------------------------CCTTCAGTTGCCTCGTGATCC---------------------------------------------------------------------------- | 21 | 2 | |
| ------------------------------------------------------------------------ATCACAGTCAACTGTTGGCA---------------------------------- | 20 | 2 | |
| ------------------------------------------------------------------------ATCACAGTCAACTGTTGGC----------------------------------- | 19 | 2 | |
| celegans | -------------GGGTCTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGCATGGTGCTCGTACCCA------------------- | ||
| cbriggsae | --CTATTATTCAAGGGTCTTCGGACCACGCCTTCAGTTGCCTCGTGATCCGCCGAATCTG--TAATGGACGAATCACAGTCAACTGTTGGCACGGTCCTTGAAGTTCACCATTTTTGAAGGTTTGG | ||
| cjaponica | ----------------------------TCCTTCAGTTTTCTCGTGATCCGCCAATCTT---CCATGGACGAATCACAGTCAACTGTTGGC----------------------------------- | ||
| cbrenneri | ----------------------------GCCGGCAGTTGCCTGTTGATCCGCCGCAATTA--TGATGGACGAATCACAGTCAACTGTTGGC----------------------------------- | ||
| cremanei | TGCTGTTATTCGAAGGTCTTCGGACCGCCCCTTCAGTTGACTCGTGATCCGCCGACTTTGATATATGGACGAATCACAGTCACCTGATGGTACGGTCTTTGAATTCCTATATTATTATGGTA---- | ||
| ** ***** ** ********* ****************** *** *** | |||
| celegans | ((((...(((((((.(((..((((((.((.(((((.(((((...........))).)).))))))).))))))..))).))))..))).)))). | 0.750 -37.70 | |
| cbriggsae | (((...(((((.((((((((((((..(((..((((((.((.(((((.(((((...... ...))).)).))))))).))))))..)))..)))))..))))...)))....)))))....))) | 0.898 -40.10 | |
| cjaponica | .((..(((((..((.(((((.(((((..... ...))).)).)))))))..)))))..)). | 1.000 -18.60 | |
| cbrenneri | (((((((((((.(((.((((.(((((((.... )).))).)).))))))).))))))))))) | 1.000 -29.40 | |
| cremanei | ((((((.......(((..(((((((((..((.((((.(((((.(((((.(((((...........))).)).)))))))))).)))).))..))))))..)))..)))........)))))) | 0.984 -40.46 |
| celegans | chromosome:V:11769899:11769992:-1 | intergenic ## {SimpF: WRM0616dF12 -1 fosmid,WRM0630cB01 -1 fosmid,F55A11.3 -1 Expression_profile,WRM064dC03 -1 fosmid,WRM0611bB04 -1 fosmid,WRM0628cB12 -1 fosmid} ## {MIR: cel-mir-250} |
| cbriggsae | chromosome:chrV:6755100:6755221:-1 | Opposite_strand|Intronic_coding|NM_007734 ## Same_strand|Intronic_coding|NM_000945 ## {MIR: cbr-mir-250} |
| cjaponica | chromosome:chrUn:133810890:133811023:-1 | intergenic |
| cbrenneri | chromosome:chrUn:84265172:84265305:1 | intergenic |
| cremanei | chromosome:chrUn:126692870:126692991:-1 | Opposite_strand|Intronic_coding|NM_073652 ## Same_strand|Intronic_coding|NM_067460 |
©2008 InteRNA Genomics B.V.