miR-Intess: cel-mir-357

cel-mir-357

Cloning frequencies
absolute	CE1
cel-mir-357 3arm	16
normalized	CE1
cel-mir-357 3arm	0.011

block6587 (miRBase cel-mir-357) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-357	0.001	no	no	0.48/0.55	19/23/0.94	0.4	0.0	14	0	1	0	22	3	3arm	1	nd	0.22	2	16	1	na	na

Clusters
Located in cluster 5: cel-mir-357, cel-mir-358

		reads	miRBase family seed
seed	---------------------------------------------------------------------------AAAUGCC-------------------------------------	9	miR-357
seed	----------------------------------------------------------------------------AAUGCCA------------------------------------	6	novel
seed	------------------------------------------------------------------------------UGCCAGU----------------------------------	1	novel
		len	cloning frequencies
			CE1
cel-miR-357	--------------------------------------------------------------------------TAAATGCCAGTCGTTGCAGGAGT----------------------	23	9
	---------------------------------------------------------------------------AAATGCCAGTCGTTGCAGGAGT----------------------	22	5
	---------------------------------------------------------------------------AAATGCCAGTCGTTGCAGG-------------------------	19	1
	-----------------------------------------------------------------------------ATGCCAGTCGTTGCAGGAGT----------------------	20	1
celegans	----ACGCTGTACTACTCACCAGCGGATCCCTACAA-CGCTGCGCATATGCATGAAC-----ACAATGAAAATGTAAATGCCAGTCGTTGCAGGAGTTCGCATACAGTAGTAAAATGCG
cbriggsae	AGAGA---------------CAGCGAATCCCGGCAATCACCGTGCATTTTCAT---CTACCAGAGGCACTAATGAAAATGCCAGTCATTGACGGAATTCGTTGAATCT-----------
cjaponica	GAAAACGAGAAATT------TGGCGAATTGTTGTAACTTTTGTGCATCTGCTTGGAAAATTTTAAGTGA----GCAAATGCCAATTGTTGCAAAAATTCGCTGAA--------------
cbrenneri	----------------------GCGAATCCCTGTAA-TACTGTGCATATACATGTCATACA------ACTAATGTAAATGCCAGTCGTTGCAGGAATTCGCTAAAAGTCAGCT------
ppacificus	--------------------------AGCATTGTAGATATGAGGTATCCTTGCAACATTTC------GATAACAAAAATGCCTATATTTTCAGGACT----------------------
cremanei	-TCAACGATGTGCTGCCTAACAGCGGATTCCAGTAA-CTCTGAGCATATACATGAAGTTTCAA----AACAATGTAAATGCCAGTCGTTGCTGGAATTCGATAAGCACTCGTGA-----
	* * * ***** * ** * *
	----- -------------------------------- -------------------- --------------------------------------------------------------	F25G6.2 F25G6.2 F25G6.2
celegans	.(((..(((((((.....(((((..(((.((( (((((.((((.(((((.... .........))))).))))))).))))).)))..)))))....)))))))....)))	1.000 -42.62
cbriggsae	(((.. ((((((((.(((.((((.((...(((((((((( ...((...)).....))))))))))..)).)))).))).))))))))..)))	1.000 -30.10
cjaponica	............(( ..(((((((.(((((((..(((.((((.(((((..............)) ))).)))))))..))))))).)))))))..))	0.994 -33.24
cbrenneri	((((((.((((((( (((((.((((.(((((........ ....))))).)))))))).)))))))).))))))............	0.919 -33.00
ppacificus	((..(((.((((((.((((((..(((......... .....)))..)))))))))))).)))..))	0.994 -10.54
cremanei	...((((.(((((.........((((((((((((( (.(((.((((.(((((...(((.... ))).))))).)))))))..))))))))))))))...)))))))))..	0.948 -44.20

celegans	chromosome:V:8580520:8580628:-1	Opposite_strand\|Intronic_coding\|F25G6.2\|F25G6.2 ## F25G6.2\|protein_coding\|F25G6.2\|F25G6.2 [Source:RefSeq_peptide;Acc:NP_505210] ## {SimpF: CEOP5204 -1 Operon,WRM0626aA01 -1 fosmid,WRM0619bH10 -1 fosmid} ## {MIR: cel-mir-357}
cbriggsae	chromosome:chrV:1213917:1214006:-1	Opposite_strand\|Intronic_coding\|NM_001106714 ## Same_strand\|Intronic_coding\|NM_001028857 ## {MIR: cbr-mir-357-1}
cjaponica	chromosome:chrUn:73154317:73154411:1	Opposite_strand\|Intronic_coding\|NM_165217
cbrenneri	chromosome:chrUn:96165556:96165639:1	Opposite_strand\|Intronic_coding\|NM_125384
ppacificus	chromosome:chrUn:14492983:14493131:-1	Same_strand\|Intronic_coding\|NM_001045869 ## Same_strand\|Boundary_coding\|NM_063816
cremanei	chromosome:chrUn:25671347:25671454:-1	Opposite_strand\|Intronic_coding\|NM_199607

miR-Intess™

cel-mir-357

block6587 (miRBase cel-mir-357) [miRNAknown_cloningOK_randfoldOK]