cel-mir-358
| absolute | CE1 |
| cel-mir-358 5arm | 3 |
| cel-mir-358 3arm | 22 |
| normalized | CE1 |
| cel-mir-358 5arm | 0.002 |
| cel-mir-358 3arm | 0.015 |
sblock55 (miRBase cel-mir-358) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-358 | 0.007 | no | no | 0.43/0.58 | 21/24/1.00 | 0.0 0.2 | 0.3 0.0 | 3 16 | 0 0 | 1 1 | 0 0 | 16 15 | 0 3 | 5arm 3arm | 1 1 | nd nd | 0.17 0.14 | 1 1 | 25 | 1 | 3 | 2 |
| Located in cluster 5: cel-mir-357, cel-mir-358 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------AUUGG---------------------UA-------------------------------------- | 15 | novel |
| seed | -------------------------------------------------------------------------------------UUGG---------------------UAU------------------------------------- | 7 | novel |
| seed | -----------------------------CCUGGC--C---------------------------------------------------------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------------AATTGG---------------------TATCCCT-GTCAAGGTCT---------------------- | 23 | 12 | |
| ------------------------------------------------------------------------------------ATTGG---------------------TATCCCT-GTCAAGGTCT---------------------- | 22 | 4 | |
| -----------------------------------------------------------------------------------AATTGG---------------------TATCCCT-GTCAAGGTC----------------------- | 22 | 3 | |
| cel-miR-358 | ------------------------------------------------------------------------------------ATTGG---------------------TATCCCT-GTCAAGGTC----------------------- | 21 | 3 |
| ----------------------------ACCTGGC--CAGGC-------ATTCCAACTGTC----------------------------------------------------------------------------------------- | 24 | 2 | |
| ----------------------------ACCTGGC--CAGGC-------ATTCCAACTGT------------------------------------------------------------------------------------------ | 23 | 1 | |
| celegans | CTCGCGACGGCTGG------------CGACCTGGC--CAGGC-------ATTCCAACTGTCAAACTTACAAAGCTTTCTCGACAATTGG---------------------TATCCCT-GTCAAGGTCTCAATCCGTTCAGCGA------- | ||
| cbriggsae | TACTCCCCATTCGGA--------TTGATACCCGACTTCCGG--------ATACCAAATGTCATATCCAA---CTCGTTTCGTCAATTGG---------------------TATCCTTAGTCGTGGTCTCAATCTGTACACGGCGAGAGTG | ||
| cbrenneri | TTTTCCAGTTTTTGAGCTATATTTTCTGATTCAACCCCACATGATATTTATACCAATCGATAAAGCAAA--ACATTTCCTATCGATTGGTATAAATATCATGCAGGGTTATATCATAAATTATGGCTTAAAAACTGAAAA---------- | ||
| cremanei | --------------------------CGACCTGGC--CAGGC-------ATTCCAACTGTC-CATCCAAGTACTTTATCGGACAATTGG---------------------TATCCCT-GTCAAGGTCT---------------------- | ||
| * * * ** **** * * * * ***** **** * ** * | |||
| ------------------- --------- ----- ---------------------------------------- ------- ------------------------- ----- | F25G6.2 F25G6.2 F25G6.2 | ||
| celegans | .(((((((((.((( .(((((((. ((((. ((.((((.((((...................)))).)))) .)).))) )))).)))))))..)))))..)))) | 1.000 -33.11 | |
| cbriggsae | ..(((((....(((( ((((.((((((((...(( (((((((.((.......... ..........)).)))) )))))..))))).))).)))))))).....)).))).... | 0.994 -40.45 | |
| cbrenneri | .....((((((((((((((((.(((.((((..(((((..(((((((((((((((((((((((....... ........)))))))))))))))))))))))..)))))..)))).))).)))))))))))))))).... | 1.000 -65.46 | |
| cremanei | .(((((((. ((((. ((.((((.(((( (................))))).)))) .)).))) )))).)))). | 1.000 -25.49 |
| celegans | chromosome:V:8580842:8580941:-1 | Opposite_strand|Intronic_coding|F25G6.2|F25G6.2 ## F25G6.2|protein_coding|F25G6.2|F25G6.2 [Source:RefSeq_peptide;Acc:NP_505210] ## {SimpF: CEOP5204 -1 Operon,WRM0626aA01 -1 fosmid,WRM0619bH10 -1 fosmid} ## {MIR: cel-mir-358} |
| cbriggsae | chromosome:chrV:1214362:1214471:-1 | Opposite_strand|Intronic_coding|NM_001106714 ## Same_strand|Intronic_coding|NM_001028857 ## {MIR: cbr-mir-358} |
| cbrenneri | chromosome:chrUn:178230186:178230323:-1 | intergenic |
| cremanei | chromosome:chrUn:25671683:25671822:-1 | Opposite_strand|Intronic_coding|NM_199607 |
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