cel-mir-56
| absolute | CE1 |
| cel-mir-56 3arm | 798 |
| normalized | CE1 |
| cel-mir-56 3arm | 0.557 |
sblock62 (miRBase cel-mir-56) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-56 | 0.001 | no | no | 0.46/0.53 | 18/24/0.99 | nd 0.0 | nd 0.9 | 0 781 | 0 0 | 0 1 | 0 0 | 17 15 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.30 0.23 | 3 2 | 798 | 1 | 0 | 2 |
| Located in cluster 7: cel-mir-56, cel-mir-55, cel-mir-54 |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-53, cel-mir-51, cel-mir-55, cel-mir-54, cel-mir-56, cel-mir-52 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------ACCCGUA------------------------------------------------- | 789 | miR-51/52/55 |
| seed | ------------------------------------------------------------------------------------CCCGUAA------------------------------------------------ | 8 | novel |
| seed | --------------------------------------------------------------------------------------CGUAAUG---------------------------------------------- | 1 | novel |
| seed | --------------------------------------GGCGGAU---------------------------------------------------------------------------------------------- | 0 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-56 | ----------------------------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG----------------------------------- | 22 | 416 |
| ----------------------------------------------------------------------------------TACCCGTAATGTTTCCGCTG------------------------------------- | 20 | 365 | |
| ----------------------------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAA--------------------------------- | 24 | 3 | |
| -----------------------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAGA---------------------------------- | 22 | 2 | |
| -----------------------------------------------------------------------------------ACCCGTAATGTTTCCGCTGA------------------------------------ | 20 | 2 | |
| ----------------------------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGA---------------------------------- | 23 | 2 | |
| -----------------------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAG----------------------------------- | 21 | 2 | |
| -----------------------------------------------------------------------------------ACCCGTAATGTTTCCGCTG------------------------------------- | 19 | 2 | |
| ----------------------------------------------------------------------------------TACCCGTAATGTTTCCGC--------------------------------------- | 18 | 2 | |
| ----------------------------------------------------------------------------------TACCCGTAATGTTTCCGCTGA------------------------------------ | 21 | 1 | |
| -------------------------------------------------------------------------------------CCGTAATGTTTCCGCTGA------------------------------------ | 18 | 1 | |
| cel-miR-56* | -------------------------------------TGGCGGATCCATTTTGGGTTGTA------------------------------------------------------------------------------- | 23 | - |
| celegans | -------------------GAGCCAGTG-TCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTT--GACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCAC---------C----------- | ||
| cbriggsae | --------------------------------GTTCTCAGGGGATCCAGTTCCGGTTGTGCCTCATCTCAATACCCAGATGGCACCCGTATTGCTTCCTCTGAGAATCGACTGCGTAC---------CG---------- | ||
| cjaponica | -------------GGAATGGATGCGGTACTCTGTTCTTGGCAGATCCATTTTAG---GTACCTCATC----ATTT--GACGGTACCCGTAATGCTTCTGCTGAGAGCCGACCGTGAGC---------CATTTTCC---- | ||
| cbrenneri | CCATGGTAGGTTGGAACAGGAGACAGTT-TCTGTTCTCGGCCGATACATTTCTGGT-GTACCTCA-----AAACT--GATGGTACCCGTAATGTTTCCGCCGAGAACCGACTGCGCTCATTTTTAGGCCCCTTCTATGG | ||
| cremanei | -TGAGGTGAGTTGGAACGGAATTCAGTT-TCTGTTCTTGGCGAATCCATTCCGGGT-GTACCTCACAGCAATCCT--GACGGTACCCGTAATGCTTCCGCTGAGAACCGACTGTTACCACCAT--GGCTTCTTCG---- | ||
| ***** * ** ** * * ** ***** ** ** ******* ** *** * **** **** * * * | |||
| celegans | ..((((..( ((.(((((..(((((..((((.(((((...((((((.........) )).)))))))).))))..)))))..))))).))))).)).. . | 1.000 -42.00 | |
| cbriggsae | ((((((((((((..((((..(((..(((((..((((........)))))))))))).))))..))))))))))))........... .. | 0.875 -33.80 | |
| cjaponica | (((((((..(((((.....(((((..(((((..((((...( ((((((((.. ...) )).))))))...))))..)))))..)))))..)))))...) )))))).. | 1.000 -47.00 | |
| cbrenneri | ((((((..(((..(((...(((.((((( ...(((((((((.((.(((((..(((. (((((((( ....) )).)))))))).))))).)).))))))))).)))))..)))...)))..)))....)))))) | 0.999 -53.80 | |
| cremanei | .((((.(((((((...((....((((( ...(((((..(((....((((.((((( ..(((...(((.....)) )..)))))))).))))....)))..))))).)))))...)).))). .)))))))). | 0.903 -42.40 |
| celegans | chromosome:X:13144612:13144708:-1 | intergenic ## {SimpF: WRM0612dE03 -1 fosmid,WRM0611bA10 -1 fosmid,WRM061aC12 -1 fosmid,WRM0634cE07 -1 fosmid,WRM0610aG08 -1 fosmid,WRM0628bB11 -1 fosmid,oe = 1.31 0 CpG,WRM066dC07 -1 fosmid,WRM063aF02 -1 fosmid,WRM061aD10 -1 fosmid} ## {MIR: cel-mir-56} |
| cbriggsae | chromosome:chrX:16836844:16836931:-1 | Opposite_strand|Intronic_coding|NM_026450 ## Same_strand|Intronic_coding|NM_064155 |
| cjaponica | chromosome:chrUn:66592629:66592732:-1 | Same_strand|Intronic_coding|NM_001027065 |
| cbrenneri | chromosome:chrUn:8944084:8944213:1 | intergenic |
| cremanei | chromosome:chrUn:90883024:90883151:1 | intergenic |
©2008 InteRNA Genomics B.V.