miR-Intess: cel-mir-52

cel-mir-52

Cloning frequencies
absolute	CE1
cel-mir-52 5arm	2168
normalized	CE1
cel-mir-52 5arm	1.515

block5886 (miRBase cel-mir-52) [miRNAknown_cloningHIGH_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-52	0.116	no	no	0.44/0.52	18/25/0.97	0.0	0.0	1773	0	1	0	16	4	5arm	1	nd	0.33	3	2168	1	na	na

Families
Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-53, cel-mir-51, cel-mir-55, cel-mir-54, cel-mir-56, cel-mir-52

		reads	miRBase family seed
seed	----------------------------------ACCCGUA---------------------------------------------------------------------------------------------	2119	miR-51/52/55
seed	--------------------------------------GUACAUA-----------------------------------------------------------------------------------------	30	novel
seed	-----------------------------------CCCGUAC--------------------------------------------------------------------------------------------	12	novel
seed	------------------------------------CCGUACA-------------------------------------------------------------------------------------------	5	novel
seed	-------------------------------------CGUACAU------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
cel-miR-52	---------------------------------CACCCGTACATATGTTTCCGTGCT-----------------------------------------------------------------------------	24	1773
	---------------------------------CACCCGTACATATGTTTCCGTGC------------------------------------------------------------------------------	23	248
	---------------------------------CACCCGTACATATGTTTCCGTGCTT----------------------------------------------------------------------------	25	50
	-------------------------------------CGTACATATGTTTCCGTGCT-----------------------------------------------------------------------------	20	25
	---------------------------------CACCCGTACATATGTTTCCGTG-------------------------------------------------------------------------------	22	17
	---------------------------------CACCCGTACATATGTTTCCG---------------------------------------------------------------------------------	20	17
	----------------------------------ACCCGTACATATGTTTCCGTGCT-----------------------------------------------------------------------------	23	12
	---------------------------------CACCCGTACATATGTTTCCGT--------------------------------------------------------------------------------	21	8
	-----------------------------------CCCGTACATATGTTTCCGTGCT-----------------------------------------------------------------------------	22	5
	-------------------------------------CGTACATATGTTTCCGTGC------------------------------------------------------------------------------	19	5
	---------------------------------CACCCGTACATATGTTTCC----------------------------------------------------------------------------------	19	5
	------------------------------------CCGTACATATGTTTCCGTGCT-----------------------------------------------------------------------------	21	2
	---------------------------------CACCCGTACATATGTTTC-----------------------------------------------------------------------------------	18	1
celegans	-----------------TCCAACTCTAACAGTCCACCCGTACATATGTTTCCGTGCTTGACAGCGAAGCTCAATCACGTT-ACAATGAAAGGGTAGCCGGTTATTGAAGTTGGGTCTT----------------
cbriggsae	----------------TTCCCGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACA-TAGAGCTCAATCACGAT-ACAATGAGCGGGTAGCCGGTCATCG-AGTCGGAA-------------------
cjaponica	TATT------TCGACGCTCCTCCAACGACAGACCACCCGTACATATGTTTCCGTGCTTGACTCTACGCCTCAATCACGTTAACAATTTATGGTTCGCCGGTCACG--AGTTGAGCTTTTGCGTTTGATG-----
cbrenneri	TATTGGCTAGTATTCTTTTCGGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACAAT-GAGTTCAATCACGTC-ACAATTTATGGGTCGCCGGTCATTG-AGTTGAACATTTGAACCAGATCTAATA
cremanei	-----------------ACCCTCTACTACCGTCCACCCGTACATATGTTTCCGTGCTTGACATT-GTGCTCAATCACGTT-ACAATATATGGGTCGCCGGTCTT---AGGCGGT--------------------
	* * ** * *************************** ***** * * **** *
celegans	((((((((((((.(.(.((((...(((.(((...((((.(((((......).)))).)))).. ))))))...)))).).).))))..).)))))))....	1.000 -25.70
cbriggsae	.(((.((((((((.....((((((.(((.(((...((((.((((.. ......)))).)))).. )))))).)))))).....))))..) ))).))).	1.000 -33.90
cjaponica	.... (((((((..((.((((....((((...((..((((((((..((((.((((.........)))).))))..))))...))))...))..))))... .)))))).....))))).))..	0.979 -29.10
cbrenneri	((((((......(((..((((((((((((.....(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).))))))).....))))..) ))))))).....)))......))))))	0.838 -31.90
cremanei	(((.((((..((((...(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).)))))))...))))..) ))).)))	1.000 -28.80

celegans	chromosome:IV:14033976:14034075:1	intergenic ## {SimpF: WRM0634bF10 1 fosmid,WRM0631dC06 1 fosmid,WRM0614cF04 1 fosmid,WRM0628aF10 1 fosmid} ## {MIR: cel-mir-52}
cbriggsae	chromosome:chrIV:5731131:5731226:1	Same_strand\|Intronic_coding\|NM_001106790 ## Opposite_strand\|Intronic_coding\|NM_001128722 ## {MIR: cbr-mir-52}
cjaponica	chromosome:chrUn:11282764:11282884:1	intergenic
cbrenneri	chromosome:chrUn:102731927:102732057:1	intergenic
cremanei	chromosome:chrUn:56827927:56828018:-1	Opposite_strand\|Intronic_coding\|NM_069625

miR-Intess™

cel-mir-52

block5886 (miRBase cel-mir-52) [miRNAknown_cloningHIGH_nonpairedHIGH]