cel-mir-55
| absolute | CE1 |
| cel-mir-55 5arm | 31 |
| cel-mir-55 3arm | 1868 |
| normalized | CE1 |
| cel-mir-55 5arm | 0.022 |
| cel-mir-55 3arm | 1.305 |
sblock63 (miRBase cel-mir-55) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-55 | 0.001 | no | no | 0.39/0.53 | 18/24/0.96 | 0.0 0.0 | 0.9 0.6 | 30 1763 | 0 0 | 1 1 | 0 0 | 22 15 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.10 0.13 | 1 1 | 1899 | 1 | 1 | 2 |
| Located in cluster 7: cel-mir-56, cel-mir-55, cel-mir-54 |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-53, cel-mir-51, cel-mir-55, cel-mir-54, cel-mir-56, cel-mir-52 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------ACCCGUA------------------------------------------------------ | 1807 | miR-51/52/55 |
| seed | ------------------------------------------------------------------------------------------CCCGUAU----------------------------------------------------- | 34 | novel |
| seed | -----------------------------------------------GGCAGAA------------------------------------------------------------------------------------------------ | 31 | novel |
| seed | ---------------------------------------------------------------------------------------------GUAUAAG-------------------------------------------------- | 23 | novel |
| seed | -------------------------------------------------------------------------------------------CCGUAUA---------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------------------------------------------------UACCCGU------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------------------------------CGUAUAA--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-55 | ----------------------------------------------------------------------------------------TACCCGTATAAGTTTCTGCTGAG--------------------------------------- | 23 | 1238 |
| ----------------------------------------------------------------------------------------TACCCGTATAAGTTTCTGCTG----------------------------------------- | 21 | 525 | |
| ----------------------------------------------------------------------------------------TACCCGTATAAGTTTCTGC------------------------------------------- | 19 | 30 | |
| -----------------------------------------------------------------------------------------ACCCGTATAAGTTTCTGCTGAG--------------------------------------- | 22 | 24 | |
| --------------------------------------------------------------------------------------------CGTATAAGTTTCTGCTGAG--------------------------------------- | 19 | 20 | |
| ----------------------------------------------CGGCAGAAACCTATCGGTT------------------------------------------------------------------------------------- | 19 | 16 | |
| ----------------------------------------------CGGCAGAAACCTATCGGTTAT----------------------------------------------------------------------------------- | 21 | 14 | |
| ----------------------------------------------------------------------------------------TACCCGTATAAGTTTCTGCTGA---------------------------------------- | 22 | 6 | |
| -----------------------------------------------------------------------------------------ACCCGTATAAGTTTCTGCTG----------------------------------------- | 20 | 5 | |
| ----------------------------------------------------------------------------------------TACCCGTATAAGTTTCTG-------------------------------------------- | 18 | 4 | |
| --------------------------------------------------------------------------------------------CGTATAAGTTTCTGCTGA---------------------------------------- | 18 | 3 | |
| -----------------------------------------------------------------------------------------ACCCGTATAAGTTTCTGC------------------------------------------- | 18 | 3 | |
| -----------------------------------------------------------------------------------------ACCCGTATAAGTTTCTGCTGA---------------------------------------- | 21 | 2 | |
| ----------------------------------------------------------------------------------------TACCCGTATAAGTTTCTGCTGAGC-------------------------------------- | 24 | 2 | |
| ----------------------------------------------------------------------------------------TACCCGTATAAGTTTCTGCT------------------------------------------ | 20 | 2 | |
| ------------------------------------------------------------------------------------------CCCGTATAAGTTTCTGCTGAG--------------------------------------- | 21 | 1 | |
| ----------------------------------------------CGGCAGAAACCTATCGGTTATA---------------------------------------------------------------------------------- | 22 | 1 | |
| ---------------------------------------------------------------------------------------ATACCCGTATAAGTTTCTGCTG----------------------------------------- | 22 | 1 | |
| -------------------------------------------------------------------------------------------CCGTATAAGTTTCTGCTG----------------------------------------- | 18 | 1 | |
| ------------------------------------------------------------------------------------------CCCGTATAAGTTTCTGCTG----------------------------------------- | 19 | 1 | |
| celegans | -------------------AGATTTGGAACTTAA-----TGGGACTCGGCAGAAACCTATCGGTTATACTT----TTTGGATATGCTATACCCGTATAAGTTTCTGCTGAGCCCCT----TATTCCTGTT-------------------- | ||
| cbriggsae | ----------GTCCGCGCCAAAATTGAATCGTCACAAAGGGGGACTCGGCGGAAAATATGGTGGTATACTA-CACAGTGAATA-GATATACCCGTATATTTTTCTGCCGAGCCCCTCCACGACATCAATAAGGCCGAC------------ | ||
| cjaponica | ------------------TAGGGTCAG-------------GGGACTCGGCTGAAGCTTATCGTGTTTATCTGCATTTTGTATA-GATATACCCGTATAAGTTTCCGCTGAGCCCCC----TTTGACTCTA-------------------- | ||
| cbrenneri | TAGTATTCCAAGAATTGCCAGGTTTGG-TAGTCGC----TGGGACTAGGCGGAAGTATAGAGGGTATACTT---CATCAAGTA-ACTATACCCGTATATATTTCTGCTTAGCCCCT----GACACCATCTTGGCCTTTCTTGCTATCTA- | ||
| cremanei | ---GATTGTGAAAGAGTCCAGACTCGGAAAGTCGCA---TGGGACTCGGCAGAAGCACTTGGGGTATACTT---CACAGAGTA-ACTATACCCGTATTTGTTTCTGCTGAGCCCCT----GACACCAGTTCGGTACTTCTTATCATGATC | ||
| * * ****** *** *** * ** ** *********** **** ** ****** * | |||
| celegans | ......((((..((( .(((.((((((((((((.((((((.(((((.. .........).)))).))).))).))))))))))))))).) )))))).... | 1.000 -35.30 | |
| cbriggsae | ...((.(((...(((((.((((......(((((.((((((((((((((((..((((((((( .........)) ).))))))..)))))))).)))))))))))))..))))..)))))..))))).. | 0.992 -48.40 | |
| cjaponica | ((((((((( (((.((((((.(((((((((((.((.(((((((.....))..) )))).)).)).))))))))).)))))).)))) )..))))))) | 1.000 -45.20 | |
| cbrenneri | (((.((..((((((..((((((..((( (.((((. .(((.(((((((((((((((..(((((((((( ....))))) ....)))))...)))))))))))))))))).) ))))))).))))))..))))))..))))) | 1.000 -61.30 | |
| cremanei | (((..(((((((((((..(((.((...((((.. .(((.(((((((((((((..(((((((((((( ....))))) ....))))).))..)))))))))))))))).) ))).)))))..)).))).))).)))..))) | 0.999 -56.80 |
| celegans | chromosome:X:13144748:13144845:-1 | intergenic ## {SimpF: WRM0612dE03 -1 fosmid,WRM0611bA10 -1 fosmid,WRM061aC12 -1 fosmid,WRM0634cE07 -1 fosmid,WRM0610aG08 -1 fosmid,WRM0628bB11 -1 fosmid,oe = 1.31 0 CpG,WRM066dC07 -1 fosmid,WRM063aF02 -1 fosmid,WRM061aD10 -1 fosmid} ## {MIR: cel-mir-55} |
| cbriggsae | chromosome:chrX:16836962:16837087:-1 | Opposite_strand|Intronic_coding|NM_026450 ## Same_strand|Intronic_coding|NM_064155 ## {MIR: cbr-mir-55} |
| cjaponica | chromosome:chrUn:66592796:66592889:-1 | Same_strand|Intronic_coding|NM_001027065 |
| cbrenneri | chromosome:chrUn:8943944:8944079:1 | intergenic |
| cremanei | chromosome:chrUn:90882888:90883023:1 | intergenic |
©2008 InteRNA Genomics B.V.