miR-Intess: cel-mir-51

cel-mir-51

Cloning frequencies
absolute	CE1
cel-mir-51 5arm	255
cel-mir-51 3arm	26
normalized	CE1
cel-mir-51 5arm	0.178
cel-mir-51 3arm	0.018

sblock39 (miRBase cel-mir-51) [miRNAknown_cloningHIGH_multiarm_DicerOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-51	0.024	no	no	0.45/0.57	18/24/0.94	0.0 0.0	0.0 0.0	217 25	0 0	1 1	0 0	16 23	3 6	5arm 3arm	1 1	nd nd	0.17 0.19	1 1	281	1	2	1

Families
Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-53, cel-mir-51, cel-mir-55, cel-mir-54, cel-mir-56, cel-mir-52

		reads	miRBase family seed
seed	-----------------ACCCGUA---------------------------------------------------------------------------------	247	miR-51/52/55
seed	--------------------------------------------------------------AUGGAAG------------------------------------	26	novel
seed	---------------------GUAGCUC-----------------------------------------------------------------------------	4	novel
seed	------------------CCCGUAG--------------------------------------------------------------------------------	3	novel
seed	--------------------CGUAGCU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
cel-miR-51	----------------TACCCGTAGCTCCTATCCATGTT------------------------------------------------------------------	23	217
	-------------------------------------------------------------CATGGAAGCAGGTACAGGTGC-----------------------	21	25
	----------------TACCCGTAGCTCCTATCCATGT-------------------------------------------------------------------	22	11
	----------------TACCCGTAGCTCCTATCCA----------------------------------------------------------------------	19	10
	----------------TACCCGTAGCTCCTATCCATG--------------------------------------------------------------------	21	4
	----------------TACCCGTAGCTCCTATCC-----------------------------------------------------------------------	18	3
	--------------------CGTAGCTCCTATCCATGTT------------------------------------------------------------------	19	3
	-----------------ACCCGTAGCTCCTATCCATGTT----A-------------------------------------------------------------	23	3
	-------------------CCGTAGCTCCTATCCATGTT------------------------------------------------------------------	20	1
	----------------TACCCGTAGCTCCTATCCAT---------------------------------------------------------------------	20	1
	----------------TACCCGTAGCTCCTATCCATGTT----A-------------------------------------------------------------	24	1
	--------------------CGTAGCTCCTATCCATGTT----A-------------------------------------------------------------	20	1
	-------------------------------------------------------------CATGGAAGCAGGTACAGG--------------------------	18	1
celegans	GTCCGAAAAGTCCGTCTACCCGTAGCTCCTATCCATGTT----ACTGGTCAAA-AAGTGAACATGGAAGCAGGTACAGGTGCACGGCGAGTAGGGTCATGAAGCT
cjaponica	----------------TACCCGTAGCTCCTATCCATGTTGATAAGTTATCACA-ATGCCAACATGGAAGCAGGTACTGGTG------------------------
cbrenneri	----------------TACCCGTAGCTCCTATCCATGTT-----GTTATCAAAGAAGTCAACATGGAAGTTGGTACCGGTG------------------------
	*********************** * *** * * * ******** * **
celegans	((((.....(.((((.((((.(((.((.((.(((((((( (((....... .)))).))))))))).)).))).)))).))))).....))).)........	1.000 -33.30
cjaponica	((((.(((.((.((.(((((((((............. ....))))))))))).)).))).))))	1.000 -20.93
cbrenneri	...(((..(((....(((((((( (.............)))))))))....)))..)))..	1.000 -16.92

celegans	chromosome:IV:11025983:11026082:-1	intergenic ## {SimpF: WRM0616dB12 -1 fosmid,WRM063bC05 -1 fosmid,WRM0641dF09 -1 fosmid,WRM064bF06 -1 fosmid} ## {MIR: cel-mir-51}
cjaponica	chromosome:chrUn:59536079:59536218:-1	Opposite_strand\|Intronic_coding\|NM_059487
cbrenneri	chromosome:chrUn:102735922:102736061:1	intergenic

miR-Intess™

cel-mir-51

sblock39 (miRBase cel-mir-51) [miRNAknown_cloningHIGH_multiarm_DicerOK]