cel-mir-54
| absolute | CE1 |
| cel-mir-54 5arm | 14 |
| cel-mir-54 3arm | 439 |
| normalized | CE1 |
| cel-mir-54 5arm | 0.010 |
| cel-mir-54 3arm | 0.307 |
sblock64 (miRBase cel-mir-54) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-54 | 0.004 | no | no | 0.33/0.50 | 18/25/0.95 | 0.0 0.0 | 0.7 0.8 | 11 417 | 0 0 | 1 1 | 0 0 | 18 15 | 8 9 | 5arm 3arm | 1 1 | nd nd | 0.19 0.29 | 2 2 | 453 | 1 | 1 | 2 |
| Located in cluster 7: cel-mir-56, cel-mir-55, cel-mir-54 |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-53, cel-mir-51, cel-mir-55, cel-mir-54, cel-mir-56, cel-mir-52 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------ACCCGUA-------------------------------------------------- | 431 | miR-51/52/55 |
| seed | --------------------------------------GGAUAUG-------------------------------------------------------------------------------------------- | 14 | novel |
| seed | ------------------------------------------------------------------------------------GUAAUCU---------------------------------------------- | 4 | novel |
| seed | ---------------------------------------------------------------------------------CCCGUAA------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------------------------------------------CCGUAAU------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------------------TACCCGTAATCTTCATAATCCG------------------------------------ | 22 | 260 | |
| cel-miR-54 | -------------------------------------------------------------------------------TACCCGTAATCTTCATAATCCGAG---------------------------------- | 24 | 157 |
| -------------------------------------------------------------------------------TACCCGTAATCTTCATAA---------------------------------------- | 18 | 12 | |
| -------------------------------------AGGATATGAGACGACGAGA--------------------------------------------------------------------------------- | 19 | 7 | |
| -------------------------------------AGGATATGAGACGACGAGAAC------------------------------------------------------------------------------- | 21 | 4 | |
| --------------------------------------------------------------------------------ACCCGTAATCTTCATAATCCG------------------------------------ | 21 | 3 | |
| -----------------------------------------------------------------------------------CGTAATCTTCATAATCCGAG---------------------------------- | 20 | 2 | |
| -------------------------------------AGGATATGAGACGACGAG---------------------------------------------------------------------------------- | 18 | 2 | |
| -----------------------------------------------------------------------------------CGTAATCTTCATAATCCG------------------------------------ | 18 | 2 | |
| -------------------------------------AGGATATGAGACGACGAGAACATT---------------------------------------------------------------------------- | 24 | 1 | |
| -------------------------------------------------------------------------------TACCCGTAATCTTCATAATCCGAGT--------------------------------- | 25 | 1 | |
| ---------------------------------------------------------------------------------CCCGTAATCTTCATAATCCG------------------------------------ | 20 | 1 | |
| -------------------------------------------------------------------------------TACCCGTAATCTTCATAATCC------------------------------------- | 21 | 1 | |
| celegans | -------------------GTGAGTCGCGCTCTGACTAGGATATGAGACGACGAGAACATTGCTTTTTTAAAAGACTTGTACCCGTAATCTTCATAATCCGAGTCAGGGCTAGCTGAC------------------- | ||
| cbriggsae | ------------------------------------TGGGATATGAGCAAACGTGTACACGATACTTATTC----CCTGTACCCGTATTC-TCAT-ATCTGA----------------------------------- | ||
| cjaponica | TGGGATCTACTGGCGGGCACCGCGACATTCCCTGACTAGGATATGAGATTACGTGTACAGTGC---CACGCCATACGTGTACCCGTAATCTTCATAATCCGAGCCAGGGCGTCGTCGAAATTGGTACCTGTCTCCCA | ||
| cbrenneri | AAGGAAGTTGAG-------TGTAGGCGAGCCCTGACTGGGATATGAGAGGACGAGTACATTGAATTCAACCATTACTTGTACCCGTAATCTTCATAATCCGAGCCAGGGGGAGCCGTGGGTACACTCCTTCCTT--- | ||
| * ********* *** * *** * ********** ** **** *** ** | |||
| celegans | ((.(((...(((((((((.((((((((((..(((.(.(((...((((....))))...))).).)))..)).)))).)))).)))))))))..))).)) | 1.000 -35.30 | |
| cbriggsae | ..(((((((((...(((.(((((.((.......)) ..))))).)))...) )))) )))).. | 1.000 -18.70 | |
| cjaponica | .((((......((((((.((((((((((.(((((.((.(((((((((((((((.((((((((. .......))).))))).)))))))).)))).))).)).))))).)).))))....)))).)))))))))). | 1.000 -57.10 | |
| cbrenneri | (((((((..((( (((((((...(((((.((.((((((((((..(((.(((((...(((......)))...))))).)))..))).)))).))).)).)))))...))).....)))))))))))))) | 1.000 -52.80 |
| celegans | chromosome:X:13144917:13145015:-1 | intergenic ## {SimpF: WRM0612dE03 -1 fosmid,WRM0611bA10 -1 fosmid,WRM061aC12 -1 fosmid,WRM0634cE07 -1 fosmid,WRM0610aG08 -1 fosmid,WRM0628bB11 -1 fosmid,oe = 1.31 0 CpG,WRM066dC07 -1 fosmid,WRM063aF02 -1 fosmid,WRM061aD10 -1 fosmid} ## {MIR: cel-mir-54} |
| cbriggsae | chromosome:chrX:16837252:16837390:-1 | Opposite_strand|Intronic_coding|NM_026450 ## Same_strand|Intronic_coding|NM_064155 |
| cjaponica | chromosome:chrUn:66592906:66593039:-1 | Same_strand|Intronic_coding|NM_001027065 |
| cbrenneri | chromosome:chrUn:8943816:8943942:1 | intergenic |
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