miR-Intess: cel-mir-53

cel-mir-53

Cloning frequencies
absolute	CE1
cel-mir-53 5arm	125
normalized	CE1
cel-mir-53 5arm	0.087

block4539 (miRBase cel-mir-53) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-53	0.002	no	no	0.47/0.52	19/25/0.97	0.0	0.0	109	0	1	0	15	5	5arm	1	nd	0.25	3	125	1	na	na

Families
Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-53, cel-mir-51, cel-mir-55, cel-mir-54, cel-mir-56, cel-mir-52

		reads	miRBase family seed
seed	----------------------------------ACCCGUA---------------------------------------------------------------------------------------------	123	miR-51/52/55
seed	--------------------------------------GUACAUU-----------------------------------------------------------------------------------------	1	novel
seed	------------------------------------CCGUACA-------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
cel-miR-53	---------------------------------CACCCGTACATTTGTTTCCGTGCT-----------------------------------------------------------------------------	24	109
	---------------------------------CACCCGTACATTTGTTTCCGTGC------------------------------------------------------------------------------	23	9
	---------------------------------CACCCGTACATTTGTTTCCGTGCTT----------------------------------------------------------------------------	25	3
	---------------------------------CACCCGTACATTTGTTTCCGTG-------------------------------------------------------------------------------	22	1
	---------------------------------CACCCGTACATTTGTTTCCG---------------------------------------------------------------------------------	20	1
	-------------------------------------CGTACATTTGTTTCCGTGC------------------------------------------------------------------------------	19	1
	-----------------------------------CCCGTACATTTGTTTCCGTGCT-----------------------------------------------------------------------------	22	1
celegans	------------------CCGATTCTGACAGTCCACCCGTACATTTGTTTCCGTGCTTGACTTCAAAGCTCAATCACGGC-ACAATATATGGGTCGCCAGTCATTGTAGTCGGA--------------------
cbriggsae	----------------TTCCCGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACA-TAGAGCTCAATCACGAT-ACAATGAGCGGGTAGCCGGTCATCG-AGTCGGAA-------------------
cjaponica	TATT------TCGACGCTCCTCCAACGACAGACCACCCGTACATATGTTTCCGTGCTTGACTCTACGCCTCAATCACGTTAACAATTTATGGTTCGCCGGTCACG--AGTTGAGCTTTTGCGTTTGATG-----
cbrenneri	TATTGGCTAGTATTCTTTTCGGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACAAT-GAGTTCAATCACGTC-ACAATTTATGGGTCGCCGGTCATTG-AGTTGAACATTTGAACCAGATCTAATA
cremanei	-----------------ACCCTCTACTACCGTCCACCCGTACATATGTTTCCGTGCTTGACATT-GTGCTCAATCACGTT-ACAATATATGGGTCGCCGGTCTT---AGGCGGT--------------------
	* ** * ********** ************ ***** * * * * ** *
celegans	((((((.((((.....(((((((...((((..(((((.((((((....)).)))).))))). ))))..))))))).....))))....)))))).	1.000 -31.60
cbriggsae	.(((.((((((((.....((((((.(((.(((...((((.((((.. ......)))).)))).. )))))).)))))).....))))..) ))).))).	1.000 -33.90
cjaponica	.... (((((((..((.((((....((((...((..((((((((..((((.((((.........)))).))))..))))...))))...))..))))... .)))))).....))))).))..	0.979 -29.10
cbrenneri	((((((......(((..((((((((((((.....(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).))))))).....))))..) ))))))).....)))......))))))	0.838 -31.90
cremanei	(((.((((..((((...(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).)))))))...))))..) ))).)))	1.000 -28.80

celegans	chromosome:IV:11027567:11027661:-1	intergenic ## {SimpF: WRM0616dB12 -1 fosmid,WRM063bC05 -1 fosmid,WRM064bF06 -1 fosmid} ## {MIR: cel-mir-53}
cbriggsae	chromosome:chrIV:5731131:5731226:1	Same_strand\|Intronic_coding\|NM_001106790 ## Opposite_strand\|Intronic_coding\|NM_001128722 ## {MIR: cbr-mir-52}
cjaponica	chromosome:chrUn:11282764:11282884:1	intergenic
cbrenneri	chromosome:chrUn:102731927:102732057:1	intergenic
cremanei	chromosome:chrUn:56827927:56828018:-1	Opposite_strand\|Intronic_coding\|NM_069625

miR-Intess™

cel-mir-53

block4539 (miRBase cel-mir-53) [miRNAknown_cloningHIGH_randfoldOK]