C.elegans small RNAs

miR-Intess™

miR classification

miR expression

block5234_cand

block5234_cand

Cloning frequencies
absolute	CE1
block5234_cand 3arm	1
normalized	CE1
block5234_cand 3arm	0.001

block5234_cand relative cloning frequencies

block5234 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	19	5	3arm	1	nd	0.19	3	1	1	na	na

Clusters
Located in cluster 4: sblock43_cand, block5234_cand

block5234 hairpin

		reads	miRBase family seed
seed	----------------------------------------------------------------------AAGACCA----------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------------------------AAAGACCA--CCGGTTACACTAC-------------------	21	1
celegans	CGGAAAAACCATGCCTCCCAATGGTGAGTGTAACCGCACGTCTTGTTTCAAAACTCAATATATGGA--AAAAGACCA--CCGGTTACACTACATTATTGGTTGGAGTCTGA
cremanei	--GTATAAAAATCTCTGAGATTTGTCCAAAACTGACTGAGTTCTGATAAAAAAATGTAT---TGGCAGAAAAGACCA-----CTTGGACCA-------------AATCTCA
cbrenneri	CGG------------TCCAATTTGT---------------TCTTGTCCGGATGATCATTATCTGGC--TAAAGACCATGCAACTTGTACTA--------------------
	* * * * ** * ** * * * * **** ** *
celegans	((((.........((..(((((((((((((((((((...(((((.(((((............)))) ).))))).. .)))))))))).)))))))))..))..)))).	0.830 -39.10
cremanei	.............((((((((((((((......((...(((((...((........) )..))))).)).... .)))))).) )))))))	0.950 -19.40
cbrenneri	.(( (.(((.(((( ((((..((((((((...)))))))). ..))))....)))).))).))).	0.998 -15.80

celegans	chromosome:IV:1027193:1027299:1	intergenic
cremanei	chromosome:chrUn:93036443:93036530:1	intergenic ## {SimpF: trf}
cbrenneri	chromosome:chrUn:191779505:191779651:1	Same_strand\|Boundary_coding\|NM_058870

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