cel-mir-42
| absolute | CE1 |
| cel-mir-42 5arm | 3 |
| cel-mir-42 3arm | 126 |
| normalized | CE1 |
| cel-mir-42 5arm | 0.002 |
| cel-mir-42 3arm | 0.088 |
sblock23 (miRBase cel-mir-42) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-42 | 0.001 | no | no | 0.39/0.50 | 18/23/0.45 | 0.0 0.0 | 1.7 0.9 | 3 121 | 0 0 | 1 1 | 0 0 | 12 15 | 7 9 | 5arm 3arm | 1 1 | nd nd | 0.22 0.05 | 4 1 | 129 | 1 | -1 | 1 |
| Located in cluster 2: cel-mir-42, cel-mir-43, cel-mir-44 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------CACCGGG-------------------------------------- | 123 | miR-35/36/38/39/40/41 |
| seed | ----------------------------GUGGGUG------------------------------------------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------------------------------------------ACCGGGU------------------------------------- | 2 | miR-42 |
| seed | -------------------------------------------------------------------------------------GGGUUAA---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------------------------------------------------------TCACCGGGTTAACATCTAC--------------------------- | 19 | 67 | |
| --------------------------------------------------------------------------------TCACCGGGTTAACATCTACAG------------------------- | 21 | 54 | |
| --------------------------------------------------------------------------------TCACCGGGTTAACATCTACAGAG----------------------- | 23 | 2 | |
| ---------------------------TGTGGGTGTTTGCTTTTT--------------------------------------------------------------------------------- | 18 | 2 | |
| ------------------------------------------------------------------------------------CGGGTTAACATCTACAGA------------------------ | 18 | 1 | |
| ---------------------------------------------------------------------------------CACCGGGTTAACATCTACAGA------------------------ | 21 | 1 | |
| ---------------------------------------------------------------------------------CACCGGGTTAACATCTAC--------------------------- | 18 | 1 | |
| ---------------------------TGTGGGTGTTTGCTTTTTCGG--TG-------------------------------------------------------------------------- | 23 | 1 | |
| cel-miR-42 | --------------------------------------------------------------------------------TCACCGGGTTAACATCTACAGA------------------------ | 22 | - |
| celegans | ---------------TTCGCGGACCTTTGTGGGTGTTTGCTTTTTCGG--TGAAGTT----GTCTTCCGTAGCTTCTTCTTCACCGGGTTAACATCTACAGAGGTCCAAAAAGGGG---------- | ||
| cbriggsae | ----------AACCCTTGTCGGACCTTTGTGGGTGTTCGCCTTTTCGG--TGAAGT----------TACTGAATGCTTCTTCACCGGGTTAACATCTACAGAGGTCCTAAAGGGTT---------- | ||
| cjaponica | TCTCGTCTTGAGACGCCGTTGGACCTCCGTGGATGTTTGCTTTTGCGG--TGAAGAG--------GTGATAACGGGCGCTTCACCGGGTTAACATCTACAGAGGTCCGGGCGTCTTCGTGGCGGGA | ||
| cbrenneri | --------------------------TTGTGGATGTTTGCCTTTTCGG--TGAAGTT---------TCAAAAGATATTCTTCACCGGGTTAACATCTACAG------------------------- | ||
| ppacificus | ---CATAGTGCATTCAGTGCAGCCCGCAGTGGGTGTCTGCCT---CGGTCTGAAGTGTGAGATGCATGATCCTCCGTTCTTCACCGGGTGAACATCCATTGCGGGCGCATGCACCCTG-------- | ||
| cremanei | ---------AAACCCTTGTCGGACCTTTGTGGATGTTTCCTTTTTCGG--TGAAGTT---GTTCCGTTGAATTATCTTCTTCACCGGGTTAACATCTACAGAGGTCCTCGAGGGTTT--------- | ||
| **** *** * * *** ***** *********** ****** * * | |||
| celegans | .....(((((((((((((((((.(((....((( (((((.. ((........)).....))))))))))).)))))))))))))))))......... | 1.000 -41.70 | |
| cbriggsae | (((((((...(((((((((((((((((.(((....((( (((((. ............))))))))))).)))))))))))))))))..))))))) | 1.000 -51.62 | |
| cjaponica | (((((((..((((((((..((((((((.(((((((((.(((....((( (((((.. ((........)).))))))))))).))))))))).))))))))))))))))...))))))) | 1.000 -64.70 | |
| cbrenneri | .((((((((((.(((....((( (((((.. ((....))....))))))))))).)))))))))). | 1.000 -28.50 | |
| ppacificus | ....(((((.....(((.(((((((((((((((..(((. ((((..((((...(((..........)))....)))))))))))..))))))))))))))))))))))).... | 0.999 -54.40 | |
| cremanei | (((((((((..(((((((((((((((((..((....((( (((((.. ((((....))))......))))))))))..))))))))))))))))).))))))))) | 1.000 -54.20 |
| celegans | chromosome:II:11889727:11889821:1 | intergenic ## {SimpF: WRM0618bC04 1 fosmid,WRM0615cF06 1 fosmid,WRM061cG08 1 fosmid,WRM0623bB10 1 fosmid,WRM064dE11 1 fosmid} ## {MIR: cel-mir-42} |
| cbriggsae | chromosome:chrII:8049572:8049665:-1 | Same_strand|Intronic_coding|NM_001047975 ## Opposite_strand|Intronic_coding|NM_133464 ## {MIR: cbr-mir-42} |
| cjaponica | chromosome:chrUn:98919245:98919360:-1 | intergenic |
| cbrenneri | chromosome:chrUn:101676437:101676571:1 | Opposite_strand|Intronic_coding|NM_007742 ## Same_strand|Intronic_coding|NM_138591 |
| ppacificus | chromosome:chrUn:21366661:21366772:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
| cremanei | chromosome:chrUn:8362075:8362177:1 | intergenic |
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