cel-mir-44
| absolute | CE1 |
| cel-mir-44 5arm | 19 |
| cel-mir-44 3arm | 454 |
| normalized | CE1 |
| cel-mir-44 5arm | 0.013 |
| cel-mir-44 3arm | 0.317 |
sblock25 (miRBase cel-mir-44) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-44 | 0.001 | no | no | 0.39/0.58 | 18/22/0.98 | 0.0 0.0 | 0.9 0.0 | 19 749 | 0 0 | 1 1 | 0 0 | 15 15 | 7 12 | 5arm 3arm | 1 2 | nd nd | 0.10 0.10 | 2 1 | 927 | 1 | 1 | 2 |
| Located in cluster 2: cel-mir-42, cel-mir-43, cel-mir-44 |
| Member of family miR-44/45/61 (seed GACUAGA): cel-mir-61, cel-mir-44, cel-mir-45 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------GACUAGA---------------------------------------- | 902 | miR-44/45/61 |
| seed | -----------------------------UGGAUGU--------------------------------------------------------------------------------------------- | 19 | novel |
| seed | -----------------------------------------------------------------------------------ACUAGAG--------------------------------------- | 5 | novel |
| seed | -------------------------------------------------------------------------------------UAGAGAC------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-44 | ---------------------------------------------------------------------------------TGACTAGAGACACATTCAGCT--------------------------- | 21 | 749 |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCAGC---------------------------- | 20 | 122 | |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCAGCTT-------------------------- | 22 | 27 | |
| ----------------------------CTGGATGTGCTCGTTGGTCAT-------------------------------------------------------------------------------- | 21 | 10 | |
| ----------------------------CTGGATGTGCTCGTTGGTC---------------------------------------------------------------------------------- | 19 | 9 | |
| ----------------------------------------------------------------------------------GACTAGAGACACATTCAGCT--------------------------- | 20 | 4 | |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCA------------------------------ | 18 | 3 | |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCAG----------------------------- | 19 | 1 | |
| ------------------------------------------------------------------------------------CTAGAGACACATTCAGCT--------------------------- | 18 | 1 | |
| ----------------------------------------------------------------------------------GACTAGAGACACATTCAGC---------------------------- | 19 | 1 | |
| celegans | -------------GAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACG---AACTGTTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTA------------ | ||
| cbriggsae | --------------------------ATCTGGATGTGCTCGTTAGTCATAGACG-AATCACACTTGAAAGGTCA-----TATGACTAGAGACACATTCAGCT--------------------------- | ||
| cjaponica | --------------------------ATCTGGGTGTGCTCGTTAGTCATA----TATCCGCA------CGGCTA-TGAGTATGACTAGAGACACATTCAGCT--------------------------- | ||
| cbrenneri | CCAAGGAGACGAAGAGAGAATGGCCGATCTGGATGTGCTCGTTAGTCATAGACG-ATACACA-GAGAACGGTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGGATCTC-------------- | ||
| ppacificus | ------------GAGTCGCAGCCCCGCTCTGGATGTG-----TGATCTTGGTCGTATCCGCG--CAAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTC--------------- | ||
| cremanei | -GAGTTAGAGAGTGAGAGAATGGCCGATCTGGATGTGCTCGTTAGTCATAGACG-AATCACA-GAAAACAGTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGGATCTCAAATTGAAGAATTT | ||
| ***** **** * ** * * * * *********************** | |||
| celegans | (((((...((((((.((((((((((((..(((((((((((.((.....) )...))).. ))))))))))).))))))))).))))))...))))).. | 1.000 -42.10 | |
| cbriggsae | ..((((((((((((..(((((((((((. ..(((....)))...))). ))))))))))).))))))))).. | 1.000 -27.60 | |
| cjaponica | ..((((((((((((..(((((((( (..((... .))... ...)))))))))))).))))))))).. | 1.000 -23.90 | |
| cbrenneri | .............((((....((((((.((((((((((((..(((((((((((. ....... .......))). ))))))))))).))))))))).))))))....)))) | 1.000 -42.86 | |
| ppacificus | ((((((..((((((..((((((((( (..((.((((((((..((.( (....))....))..)))))))))).))))))))))..)))))))))))) | 0.999 -44.40 | |
| cremanei | (((((.((...(((((....((((((.((((((((((((..(((((((((((. ....... .......))). ))))))))))).))))))))).))))))....)))))..))....))))) | 0.996 -46.36 |
| celegans | chromosome:II:11889939:11890034:1 | intergenic ## {SimpF: WRM0618bC04 1 fosmid,WRM0615cF06 1 fosmid,WRM061cG08 1 fosmid,WRM0623bB10 1 fosmid,WRM064dE11 1 fosmid} ## {MIR: cel-mir-44} |
| cbriggsae | chromosome:chrII:8049246:8049381:-1 | Same_strand|Intronic_coding|NM_001047975 ## Opposite_strand|Intronic_coding|NM_133464 ## {MIR: cbr-mir-44} |
| cjaponica | chromosome:chrUn:98918995:98919130:-1 | intergenic |
| cbrenneri | chromosome:chrUn:101676729:101676836:1 | Opposite_strand|Intronic_coding|NM_007742 ## Same_strand|Intronic_coding|NM_138591 |
| ppacificus | chromosome:chrUn:21366498:21366592:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
| cremanei | chromosome:chrUn:8362354:8362474:1 | intergenic |
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