cel-mir-43
| absolute | CE1 |
| cel-mir-43 5arm | 1 |
| cel-mir-43 3arm | 26 |
| normalized | CE1 |
| cel-mir-43 5arm | 0.001 |
| cel-mir-43 3arm | 0.018 |
sblock24 (miRBase cel-mir-43) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-43 | 0.001 | no | no | 0.33/0.43 | 19/23/0.96 | 0.0 0.0 | 0.0 0.0 | 1 25 | 0 0 | 1 1 | 0 0 | 20 15 | 5 5 | 5arm 3arm | 1 1 | nd nd | 0.14 0.09 | 1 1 | 27 | 1 | 0 | 2 |
| Located in cluster 2: cel-mir-42, cel-mir-43, cel-mir-44 |
| Member of family miR-43 (seed AUCACAG): cel-mir-2, cel-mir-797, cel-mir-43 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------AUCACAG------------------------------------------------------ | 26 | miR-43 |
| seed | ------------------------------------ACAUCAA--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-43 | --------------------------------------------------------------------------------------TATCACAGTT-----TACTTGCTGTCGC---------------------------------- | 23 | 25 |
| --------------------------------------------------------------------------------------TATCACAGTT-----TACTTGCTG-------------------------------------- | 19 | 1 | |
| -----------------------------------GACATCAAGAAACTAGTGATT-------------------------------------------------------------------------------------------- | 21 | 1 | |
| celegans | ---------------TATTGGCACTAGTCGCCCGTGACATCAAGAAACTAGTGATT-ATGC---CAAACC-------ACAGGGACATATCACAGTT-----TACTTGCTGTCGCGGGCGG---------------TGCTGAGTT---- | ||
| cbriggsae | CATAAGAAAAGAGGCGATT--------CTGCCCGTGACATCAAGATGCTTGTGATT-ATGC---GAAAAT-------GTTGGGACATATCACAGTT-----TACTTGCTGTCGCAGGCGGATTATTGCTATTGCTCATTTTGTG---- | ||
| cjaponica | ----------------------------------GGACCGCAAGAAACTCGTGTTATATGC---CAAATC-------AGTGGGTCATATCACAGTT-----TACTTGCTGTCC----------------------------------- | ||
| cbrenneri | GAGCAGAATGAAAAGTGGTGTCA----CTGCCCGTGATATCAAGGAACTTGTGATTTATGC---CATAACTAACATAACCTCGACATATCACAGTT-----TACTTGCTGTCGCAGGCAGGTGTTACTGAAAAGTCTCGGGTTGATTC | ||
| ppacificus | -----------------------------------GAAAAGGAGATATCAGAGCTTGAT-----CAGGTCT----CTTTCTTAATTTATCACAGTTATTGATATCTTCT--------------------------------------- | ||
| cremanei | ---------------GATT--------CTGCCCGTGACAACAAGAAACTTGTGATT-ATGCCTAGAGAATG----AAGAAGGGACATATCACAGTT-----TACTTGCTGTCGCAGGCGG--------------------TGTC---- | ||
| ** ** * * * ** * ********** ** * ** | |||
| celegans | ..(..((((....(((((((((((.(((((((((.(((((. (((( (..... ....)).)))))))))))) ).)))).)))))))))))) )))..)... | 1.000 -47.00 | |
| cbriggsae | (((((((..((.((((((( (((((.((((((.((((..((.(((((.( (((. ...... .......))))))))))). ..)))).)))))).))))))..))))))....))..))))))) | 0.997 -39.84 | |
| cjaponica | ((((.((((((((((.(((..(((((( (..... ....)).)))))))))))) ).))))).)))) | 1.000 -23.50 | |
| cbrenneri | ((((((..(((....(((((.(( (((((.((((((.((((((((.(((((((((((. .........))))).........))))))))) ).)))).)))))).))))).)).))))).......)))..))).))) | 0.830 -35.60 | |
| ppacificus | ....(((((((((((((((((((( .((((.. ........)))))))).)))).)))))))))))) | 0.928 -16.90 | |
| cremanei | (((. (((((.((((((.((((((((.(((((.( ((((((........ .....))).)))))))))))) ).)))).)))))).))))) .))) | 1.000 -37.32 |
| celegans | chromosome:II:11889826:11889923:1 | intergenic ## {SimpF: WRM0618bC04 1 fosmid,WRM0615cF06 1 fosmid,WRM061cG08 1 fosmid,WRM0623bB10 1 fosmid,WRM064dE11 1 fosmid} ## {MIR: cel-mir-43} |
| cbriggsae | chromosome:chrII:8049403:8049522:-1 | Same_strand|Intronic_coding|NM_001047975 ## Opposite_strand|Intronic_coding|NM_133464 ## {MIR: cbr-mir-43} |
| cjaponica | chromosome:chrUn:98919132:98919269:-1 | intergenic |
| cbrenneri | chromosome:chrUn:101676581:101676716:1 | Opposite_strand|Intronic_coding|NM_007742 ## Same_strand|Intronic_coding|NM_138591 |
| ppacificus | chromosome:chrUn:65292805:65292869:-1 | Same_strand|Intronic_coding|NM_001065794 ## Opposite_strand|Intronic_coding|NM_001087971 |
| cremanei | chromosome:chrUn:8362216:8362306:1 | intergenic |
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