miR-Intess: cel-mir-797

cel-mir-797

Cloning frequencies
absolute	CE1
cel-mir-797 5arm	24
normalized	CE1
cel-mir-797 5arm	0.017

block8270 (miRBase cel-mir-797) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-797	0.001	no	no	0.35/0.38	19/25/0.84	0.0	0.8	18	0	1	0	14	4	5arm	1	nd	0.21	3	24	1	na	na

Families
Member of family miR-43 (seed AUCACAG): cel-mir-2, cel-mir-797, cel-mir-43

		reads	miRBase family seed
seed	--------------------AUCACAG-----------------------------------------------------------------------------------------------	24	miR-43
		len	cloning frequencies
			CE1
	-------------------TATCACAGCAATCACAATGA--------GAAG-----------------------------------------------------------------------	24	13
	-------------------TATCACAGCAATCACAATGA--------G--------------------------------------------------------------------------	21	5
	-------------------TATCACAGCAATCACAATG------------------------------------------------------------------------------------	19	3
	-------------------TATCACAGCAATCACAATGA-----------------------------------------------------------------------------------	20	2
	-------------------TATCACAGCAATCACAATGA--------GA-------------------------------------------------------------------------	22	1
cel-miR-797	-------------------TATCACAGCAATCACAATGA--------GAAGA----------------------------------------------------------------------	25	-
celegans	-----CGTCCAATGGACGATATCACAGCAATCACAATGA--------GAAGAATACATCTAGATACTCTTTTCATTGGTTTCTGTGAAATCGTATTTGAATG--------------------
cremanei	TCTGAAAGTTTGCTCATTTTATCACAGAAATCACAGTT-GCCTTTTCGAACCCGATATTCCTCCCGAATTGGCACTCGTTTTTTCTGGGATGGAAAGTGAGCAAAAAATCCAACTTTTCGGG
cbriggsae	-------------------TATCACAG-ATCGAGAGTGAGTACAATAGGAAGGCTACTGTAGATT---------TTCGCATGTTTGGAGTA-------------------------------
cbrenneri	-------------------AATCACAG-AAAAATTCTGAGAAAATCCGGAAAATTCACGGAAA-------AATCTCGGAAAATTCTGGAAA-------------------------------
ppacificus	------------CGTACCTTATCACAG-AAC-----TCAGTGCACTTGAGCTGCTCATTCAGCTTCGAGTAGCACAGGGCAATGTTGAGGAAGGCCGCG-----------------------
	******* * * * * *
celegans	(((.(((...(((((.((((((.((...(((((( (((((.((........)).)))))))))))..)))))))).)))))..))).)))	1.000 -28.40
cremanei	.((((((((((((((((((((((.((((((..((((.( (((..((((................))))..)))))).))..)))))).))))))..))))))))).........))))))).	0.985 -37.89
cbriggsae	..((.((( (((((((((...((((.(((.....))).)))).))) ))))...)))))))...	0.999 -11.90
cbrenneri	..((.((( ((...((((((((...((((((....)).)))).. ..))))))))..)))))))..	0.999 -20.60
ppacificus	(((.((((.(((((. ..( ((.((((((((((((((......))))).))))).)))).)))...))).))..))))..)))	1.000 -29.10

celegans	chromosome:X:4757079:4757167:1	intergenic ## {SimpF: WRM068cD04 1 fosmid,WRM067dC01 1 fosmid,WRM0618dA09 1 fosmid,WRM0613aH09 1 fosmid,WRM0641aH07 1 fosmid,WRM0632bG03 1 fosmid,WRM0618bG10 1 fosmid} ## {MIR: cel-mir-797}
cremanei	chromosome:chrUn:102111838:102111958:-1	Opposite_strand\|Intronic_coding\|NM_001122918
cbriggsae	chromosome:chrV:10617288:10617416:1	Same_strand\|Intronic_coding\|NM_075092 ## Opposite_strand\|Intronic_coding\|NM_001011629 ## Opposite_strand\|Exonic_coding\|NM_182420
cbrenneri	chromosome:chrUn:160848361:160848489:-1	Same_strand\|Intronic_coding\|NM_063434 ## {SimpF: trf,trf,trf,trf,trf}
ppacificus	chromosome:chrUn:168847191:168847271:1	Same_strand\|Intronic_coding\|NM_011564 ## Opposite_strand\|Intronic_coding\|NM_119701

miR-Intess™

cel-mir-797

block8270 (miRBase cel-mir-797) [miRNAknown_cloningOK_randfoldOK]