miR-Intess: cel-mir-2

cel-mir-2

Cloning frequencies
absolute	CE1
cel-mir-2 3arm	17893
normalized	CE1
cel-mir-2 3arm	12.500

block411 (miRBase cel-mir-2) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-2	0.001	no	no	0.42/0.56	18/24/0.98	0.0	0.0	16893	0	1	0	15	9	3arm	1	nd	0.17	2	17893	1	na	na

Families
Member of family miR-43 (seed AUCACAG): cel-mir-2, cel-mir-797, cel-mir-43

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------AUCACAG-------------------------------------------------------------	17486	miR-43
seed	---------------------------------------------------------------------------------------UCACAGC------------------------------------------------------------	215	novel
seed	------------------------------------------------------------------------------------------CAGCCAG---------------------------------------------------------	171	novel
seed	----------------------------------------------------------------------------------------CACAGCC-----------------------------------------------------------	9	novel
seed	-------------------------------------------------------------------------------------------AGCCAGC--------------------------------------------------------	7	novel
seed	-------------------------------------------------------------------------------------UAUCACA--------------------------------------------------------------	5	novel
		len	cloning frequencies
			CE1
cel-miR-2	-------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GTGC-----------------------------------	23	16893
	-------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GTG------------------------------------	22	258
	--------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GTGC-----------------------------------	22	207
	-----------------------------------------------------------------------------------------ACAGCCAGCTT--TGAT---------GTGC-----------------------------------	19	165
	-------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGA-------------------------------------------------	18	159
	-------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GTGCT----------------------------------	24	68
	-------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------G--------------------------------------	20	54
	-------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GT-------------------------------------	21	45
	-------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT------------------------------------------------	19	9
	------------------------------------------------------------------------------------------CAGCCAGCTT--TGAT---------GTGC-----------------------------------	18	7
	---------------------------------------------------------------------------------------TCACAGCCAGCTT--TGAT---------GTGC-----------------------------------	21	5
	-----------------------------------------------------------------------------------------ACAGCCAGCTT--TGAT---------GTG------------------------------------	18	5
	--------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GTG------------------------------------	21	3
	---------------------------------------------------------------------------------------TCACAGCCAGCTT--TGAT---------GTGCT----------------------------------	22	3
	------------------------------------------------------------------------------------ATATCACAGCCAGCTT--TGAT---------GTGC-----------------------------------	24	3
	------------------------------------------------------------------------------------ATATCACAGCCAGCTT--TGAT---------GTG------------------------------------	23	2
	--------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GTGCT----------------------------------	23	2
	--------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT------------------------------------------------	18	1
	---------------------------------------------------------------------------------------TCACAGCCAGCTT--TGAT---------GTG------------------------------------	20	1
	-----------------------------------------------------------------------------------------ACAGCCAGCTT--TGAT---------GTGCT----------------------------------	20	1
	--------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GT-------------------------------------	20	1
	--------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------G--------------------------------------	19	1
celegans	----------TAAACAGTATA---------CAGAAAGC----CATCAAAGCGGTGGTTGATGTGTTG--CAAATTATGACTTTCATATCACAGCCAGCTT--TGAT---------GTGCTGCCTGTTGCACTGT--------------------
cjaponica	AAATAA---CTGAAACGCATTG-----------GTAGCT---CGTCGAA-CTGCAGCTGATCTGCCG----CTCTAAAATGGACATATCACAGCCAGCTT--TGAT---------GTGCTACCTTTTCAGCTGTTT------------------
cbrenneri	--CTGA---TTCCCATGTACAGTGAACCTCCAGAAAGCA---CGTCAAAGTGGCGCGTGTTATGTCGGAAATATGAAAAGGATCATATCACAGCCAGCTT--TGAT---------GTGCTT-------GACTGTGTTCAGCTAGGAAATGTCGG
ppacificus	GGAAAGATATGAACGAGTATAG------ATCACGTAGCTGACCGGCAGTTCTGCGCGTGATGCGTGG--TAGTTATAAGCATCCGTATCACAGCCGGACTGCTGATCTGCCGATCTTGCTTCTTCTCATAGTATACTCC---------------
cremanei	GGATGAATATTCCATACCATAGTA----TACGGAAAGCC---CGTCAAAGTGGCTCGTGTTATGTTG--AATCTTGAAGTAATCATATCACAGCCAGCTT--TGAT---------GTGCTTCCTGAAGTACTATCCTTTGTCACTTGTCATTC-
	* *** * * * ** * * * * ********** * * ** ** * *
	+++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++	F16A11.3c F16A11.3 ppfr-1
	+++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++	F16A11.3d F16A11.3 ppfr-1
	+++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++	F16A11.3a F16A11.3 ppfr-1
	+++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++	F16A11.3b F16A11.3 ppfr-1
celegans	...(((((..( (((..((( ((((((((((((...(((((((..( ((.....)).)...)))))))..))).)))) )))) ).)))..))))...)))))	1.000 -38.40
cjaponica	(((((. ((((((......( (((((. ((((((( (((..((((((.((((( ........))).)).))))..))))).)) )))) ).)))))).)))))).)))))	0.999 -32.40
cbrenneri	(((( ((((...((....(((((...(((.((((( ((((((((((((..(((.((((((..............)).)))).))).)))).))) )))) )))))) ..))).)))))))..)))...)))))	0.986 -44.24
ppacificus	(((....(((((..(((((.(( (((.....((.((.(((((((((.((..((((((((.(( (.((.....))))))))))))).)).))))))))).)).)).))))))))))....)))))......)))	0.992 -47.10
cremanei	((((((......((....(((((( (.(((.((((. (((((((((((((.(((.((((... ..............)))).)))))))).))) )))) ).)))).)))..)))))))....)).......))))))	0.958 -40.15

celegans	chromosome:I:9372759:9372856:-1	Same_strand\|Intronic_coding\|F16A11.3b\|F16A11.3 ## F16A11.3\|protein_coding\|ppfr-1\|F16A11.3c [Source:RefSeq_peptide;Acc:NP_001021390] ## {SimpF: WRM0612aC09 -1 fosmid,CEOP1932 1 Operon,WRM0632bF02 -1 fosmid,WRM062bH07 -1 fosmid} ## {MIR: cel-mir-2}
cjaponica	chromosome:chrUn:94987973:94988075:1	Same_strand\|Intronic_coding\|NM_007674
cbrenneri	chromosome:chrUn:140304597:140304724:1	Same_strand\|Intronic_coding\|NM_001026219
ppacificus	chromosome:chrUn:160261320:160261450:1	Same_strand\|Intronic_coding\|NM_001109726
cremanei	chromosome:chrUn:83423063:83423195:-1	Same_strand\|Intronic_coding\|NM_001026219

miR-Intess™

cel-mir-2

block411 (miRBase cel-mir-2) [miRNAknown_cloningHIGH_randfoldOK]