cel-mir-45
| absolute | CE1 |
| cel-mir-45 5arm | 6 |
| cel-mir-45 3arm | 454 |
| normalized | CE1 |
| cel-mir-45 5arm | 0.004 |
| cel-mir-45 3arm | 0.317 |
sblock14 (miRBase cel-mir-45) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-45 | 0.001 | no | no | 0.39/0.53 | 18/22/0.99 | 0.0 0.0 | 0.0 0.0 | 5 749 | 0 0 | 1 1 | 0 0 | 14 15 | 10 7 | 5arm 3arm | 1 2 | nd nd | 0.11 0.10 | 2 1 | 914 | 1 | -1 | 2 |
| Member of family miR-44/45/61 (seed GACUAGA): cel-mir-61, cel-mir-44, cel-mir-45 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------GACUAGA------------------------------------------------- | 902 | miR-44/45/61 |
| seed | ------------------------------UGGAUGU------------------------------------------------------------------------------------------------- | 6 | novel |
| seed | -------------------------------------------------------------------------------ACUAGAG------------------------------------------------ | 5 | novel |
| seed | ---------------------------------------------------------------------------------UAGAGAC---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-44 | -----------------------------------------------------------------------------TGACTAGAGACACATTCAGCT------------------------------------ | 21 | 749 |
| -----------------------------------------------------------------------------TGACTAGAGACACATTCAGC------------------------------------- | 20 | 122 | |
| -----------------------------------------------------------------------------TGACTAGAGACACATTCAGCTT----------------------------------- | 22 | 27 | |
| -----------------------------CTGGATGTGC--TCGTTAGTC------------------------------------------------------------------------------------ | 19 | 5 | |
| ------------------------------------------------------------------------------GACTAGAGACACATTCAGCT------------------------------------ | 20 | 4 | |
| -----------------------------------------------------------------------------TGACTAGAGACACATTCA--------------------------------------- | 18 | 3 | |
| --------------------------------------------------------------------------------CTAGAGACACATTCAGCT------------------------------------ | 18 | 1 | |
| -----------------------------------------------------------------------------TGACTAGAGACACATTCAG-------------------------------------- | 19 | 1 | |
| -----------------------------CTGGATGTGC--TCGTTAGTCAT---------------------------------------------------------------------------------- | 21 | 1 | |
| ------------------------------------------------------------------------------GACTAGAGACACATTCAGC------------------------------------- | 19 | 1 | |
| celegans | ---------------CACCATGTGCCACGCTGGATGTGC--TCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGC--------------CGAATGCAT------- | ||
| cbriggsae | ---------TTCTGCTAAACAGTGCCACGCTGGATGTGT--TCGTTAGTCATAGTAACCT-CATCAATTCAGGCTTATGACTAGAGACACATTCAGCTTGGCGC--------------CAAAC-TATGCAGAA- | ||
| cjaponica | GTTCCGAGCTGCTCTGAAATCTTGCCACGCTGAATGTGC--TCGTTAGTCATAACCACCCATATCGTCAAGGGCATATGACTAGAGACACATTCAGCTTGGCTCACATTTTCAGTCTTTAAAC----------- | ||
| cbrenneri | -------------TCGGGAAACTGCCACGCTGGATGTGC--TCGTTAGTCATAGTAGCCT--ATCCTGAACGGCCTATGACTAGAGACACATTCAGCTTGGCTC--------------CGA------------- | ||
| ppacificus | -------------GAGTCGCAGCCCCGCTCTGGATGTGTGATC-TTGGTCGTATCCGCGC-AAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGC--------------CGGCTC---------- | ||
| cremanei | --------ACTGTACCAAAACGTGCCACGCTGGATGTGC--TCGTTAGTCATAATAACCT-CATTTAGTAAGGCTTATGACTAGAGACACATTCAGCTTGGCGC--------------CGAAC-TATAAACAGT | ||
| ** * *** ***** ** ** *** ** * * * ************************** * | |||
| celegans | ......((((((.((((((((((( ((..((((((((...((((..........)))).))))))))))).)))))))))).)))))) ......... | 1.000 -41.00 | |
| cbriggsae | .(((((......((((((.((((((((((( (..((((((((((...((( .........))).)))))))))).)))))))))))).)))))) ..... ...))))). | 1.000 -46.64 | |
| cjaponica | (((..(((.....((((((....((((.((((((((((( ((..((((((((....(((..........)))..))))))))))).)))))))))).))))......)))))).)))..))) | 0.913 -43.80 | |
| cbrenneri | (((((.....((((.((((((((((( ((..(((((((((..(((. .........))))))))))))))).)))))))))).)))))) ))) | 0.965 -44.40 | |
| ppacificus | ((((((..((((((..((((((((((..(( .((((((((..((.(( ....))....))..)))))))))).))))))))))..)))))) )))))) | 0.999 -44.40 | |
| cremanei | (((((........((((((.((((((((((( ((..(((((((((...((( .........))).)))))))))))).)))))))))).)))))) ..... .....))))) | 0.994 -42.77 |
| celegans | chromosome:II:11880860:11880955:-1 | intergenic ## {SimpF: WRM0618bC04 -1 fosmid,WRM061cG08 -1 fosmid,WRM064dE11 -1 fosmid,WRM0615cF06 -1 fosmid,WRM0623bB10 -1 fosmid} ## {MIR: cel-mir-45} |
| cbriggsae | chromosome:chrII:8061347:8061452:1 | Opposite_strand|Intronic_coding|NM_001047975 ## Same_strand|Intronic_coding|NM_133464 ## {MIR: cbr-mir-45-2} |
| cjaponica | chromosome:chrUn:98930653:98930773:1 | intergenic |
| cbrenneri | chromosome:chrUn:101670648:101670737:-1 | Same_strand|Intronic_coding|NM_007742 ## Opposite_strand|Intronic_coding|NM_138591 |
| ppacificus | chromosome:chrUn:21366498:21366592:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
| cremanei | chromosome:chrUn:8356876:8356983:-1 | intergenic |
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