cel-mir-240
| absolute | CE1 |
| cel-mir-240 5arm | 6 |
| cel-mir-240 3arm | 25 |
| normalized | CE1 |
| cel-mir-240 5arm | 0.004 |
| cel-mir-240 3arm | 0.017 |
sblock75 (miRBase cel-mir-240) [miRNAknown_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-240 | 0.021 | no | no | 0.43/0.57 | 21/23/1.00 | 0.0 0.4 | 0.0 0.0 | 6 23 | 0 0 | 1 1 | 0 0 | 21 15 | 1 3 | 5arm 3arm | 1 1 | nd nd | 0.17 0.22 | 1 1 | 31 | 1 | 2 | 2 |
| Located in cluster 10: cel-mir-240, cel-mir-786 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------ACUGGCC---------------------------------------------- | 14 | miR-240 |
| seed | ---------------------------------------------------------------------------------UACUGGC----------------------------------------------- | 11 | novel |
| seed | -------------------------------GAGGAUU------------------------------------------------------------------------------------------------- | 6 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-240 | ---------------------------------------------------------------------------------TACTGGCCCCCAAATCTTCGCT-------------------------------- | 22 | 13 |
| --------------------------------------------------------------------------------ATACTGGCCCCCAAATCTTCGCT-------------------------------- | 23 | 10 | |
| ------------------------------CGAGGATTTTGAGA-----CTAGAATGC----------------------------------------------------------------------------- | 23 | 6 | |
| --------------------------------------------------------------------------------ATACTGGCCCCCAAATCTTCGC--------------------------------- | 22 | 1 | |
| ---------------------------------------------------------------------------------TACTGGCCCCCAAATCTTCGC--------------------------------- | 21 | 1 | |
| celegans | -TTGTTAGAAACTTT------TTCA--AATCGAGGATTTTGAGA-----CTAGAATGCTTGAATTG-T------ACTAGCATACTGGCCCCCAAATCTTCGCTTAGAAA-----------TACAGTTCA------ | ||
| cbriggsae | ---------------------TTCA--AATCGAGAATTTCGAGG-----CCTGAATGCAAGAACCGTT------TTGAGCATACTGGCCTCCAAATTTTCGCTTTGAA--------------------------- | ||
| cbrenneri | ---------ATTTTTTCACATTTCATTAGTTGACACCTTTTTGATAGCTCTGACAACCGAGATATGCTGCTCTGAAAAGTATAGTACTGGCCAGAACTTATCATTAAAGGCGCACGCTCTTGTTGTTCAAAAAAT | ||
| cjaponica | ATTTCCAGCGATTTTCTGATTTTCG--AATCGAGGATTTCACGG-----CTAGAATGCAAGAT-----------AAAAGCATACTGGCCCTCAAATCTTCGCTTCGAA-------------CTTTGGAAGGAGGT | ||
| *** * * ** ** * * * * ** ** *** * ** * ** * * ** | |||
| celegans | ......(((....( (((. ((.(((((((((.(.(. ((((.(((((....... . ...))))).)))).).).))))))))).)).)))) .....))). | 1.000 -23.60 | |
| cbriggsae | .((( ((.(((((((((.(((( ((...((((..(((....) ))..))))...)))))).))))))))).))))). | 1.000 -30.00 | |
| cbrenneri | (((((((.(((...((..(((((...(((((.((((((.((((....((.((...(((((..((....))..))))))))).)))).)).))))..)))))..)).)))..)).)))..))))))) | 0.985 -24.00 | |
| cjaponica | ((((((.......((((((..(((( ((.(((((((((...(( ((((.((((..... ....)))).))))))...))))))))).)))))) ..)))))))))))) | 0.973 -38.11 |
| celegans | chromosome:X:7882567:7882663:1 | intergenic ## {SimpF: WRM064aB09 1 fosmid,WRM0621bE08 1 fosmid,WRM0633bB07 1 fosmid,WRM065dC03 1 fosmid,WRM0619cA11 1 fosmid,WRM0633cC10 1 fosmid,WRM0611bE01 1 fosmid,WRM0618bB10 1 fosmid} ## {MIR: cel-mir-240} |
| cbriggsae | chromosome:chrX:13573454:13573527:1 | Opposite_strand|Intronic_coding|NM_003107 ## Same_strand|Intronic_coding|NM_177736 ## {MIR: cbr-mir-240} |
| cbrenneri | chromosome:chrUn:57936576:57936701:1 | Same_strand|Intronic_coding|NM_001027175 |
| cjaponica | chromosome:chrUn:133447595:133447698:1 | Opposite_strand|Intronic_coding|NM_001099115 |
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