miR-Intess: cel-mir-786

cel-mir-786

Cloning frequencies
absolute	CE1
cel-mir-786 3arm	32
normalized	CE1
cel-mir-786 3arm	0.022

block8366 (miRBase cel-mir-786) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-786	0.001	no	no	0.35/0.42	19/23/0.88	0.4	1.2	30	0	1	0	14	3	3arm	1	nd	0.17	2	32	1	na	na

Clusters
Located in cluster 10: cel-mir-240, cel-mir-786

		reads	miRBase family seed
seed	--------------------------------------------------------------------------AAUGCCC-----------------------------------------------	20	miR-786
seed	---------------------------------------------------------------------------AUGCCCU----------------------------------------------	12	novel
		len	cloning frequencies
			CE1
cel-miR-786	-------------------------------------------------------------------------TAATGCCCTGAATGATGTTCAAT--------------------------------	23	11
	-------------------------------------------------------------------------TAATGCCCTGAATGATGTTC-----------------------------------	20	8
	--------------------------------------------------------------------------AATGCCCTGAATGATGTTCAAT--------------------------------	22	7
	--------------------------------------------------------------------------AATGCCCTGAATGATGTTC-----------------------------------	19	4
	-------------------------------------------------------------------------TAATGCCCTGAATGATGTTCA----------------------------------	21	1
	--------------------------------------------------------------------------AATGCCCTGAATGATGTTCA----------------------------------	20	1
celegans	-----------------GGGATAGTTCCCGATCGAATATCAGTTGG-GGTATTTACAAA--AAGACAAAATTGTAATGCCCTGAATGATGTTCAATCGGTGATGAATCTC------------------
cbriggsae	-GGTGAGAGTAAGTTTAGGGACCCTTCCCAACAAAATCTCAAATAGTGGCATTTACACA--AGCAATGGTATGTAATGCCCTGTACGAGATTTGGTTGGTGAGAAGTCTCTACAATAGGTATCATT--
cjaponica	TTCTTCTGTATTATCTGGGGACATTTCCCATTAGAAACTCAGCTTG--GTAGTTACATGTAATGGAAAATCTGTAATGCCCTGCATGAGGTTCTATTGGGAAGAAATTCCTTTTTTTCACTGACTGGA
cremanei	------------------------------ATAGAGTCTCGGACAG-GGCATTTACATAC-AAGATAAATTTGTAATGCCCTTGCTGAGATTCCAT--------------------------------
	* ** * * * ***** * ********* ** *
celegans	(((((.((..(((((.((((((((.(..( ((((((.((((. .........)))))))))))..).)))))))).)))))..))..)))))	1.000 -36.70
cbriggsae	.((((.........(((((((..((((((((.(((((((..((((.((((((...((( .((....)).)))))))))))))..))))))).))))).)))..))))))).........)))).	0.998 -41.07
cjaponica	.(((((.((.......(((((..(((((((.(((((.((((((..( (((.(((((.((........)).)))))))))..)).)))).))))).)))))))...))))).......)).))..)))	0.893 -35.54
cremanei	...(((((((((..(( ((((.(((((... ..........)))))))))))..)))))))))...	1.000 -26.42

celegans	chromosome:X:7882696:7882785:1	intergenic ## {SimpF: WRM064aB09 1 fosmid,WRM0621bE08 1 fosmid,WRM0633bB07 1 fosmid,WRM065dC03 1 fosmid,WRM0619cA11 1 fosmid,WRM0633cC10 1 fosmid,WRM0611bE01 1 fosmid,WRM0618bB10 1 fosmid} ## {MIR: cel-mir-786}
cbriggsae	chromosome:chrX:13573542:13573664:1	Opposite_strand\|Intronic_coding\|NM_003107 ## Same_strand\|Intronic_coding\|NM_177736 ## {MIR: cbr-mir-786}
cjaponica	chromosome:chrUn:156278193:156278318:-1	intergenic
cremanei	chromosome:chrUn:181380:181509:-1	intergenic

miR-Intess™

cel-mir-786

block8366 (miRBase cel-mir-786) [miRNAknown_cloningHIGH_randfoldOK]