miR-Intess: cel-mir-785

cel-mir-785

Cloning frequencies
absolute	CE1
cel-mir-785 3arm	4
normalized	CE1
cel-mir-785 3arm	0.003

block8221 (miRBase cel-mir-785) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-785	0.001	no	no	0.26/0.29	19/22/0.80	0.0	0.5	4	0	1	0	14	2	3arm	1	nd	0.18	2	4	1	na	na

Clusters
Located in cluster 9: cel-mir-359, cel-mir-785

Families
Member of family miR-785/86 (seed AAGUGAA): cel-mir-86, cel-mir-785

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------AAGUGAA----------------------------------------------	4	miR-785/86
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------TAAGTGAATTGTTTTGTGTAG---------------------------------	21	3
	------------------------------------------------------------------------------TAAGTGAATTGTTTTGTGT-----------------------------------	19	1
cel-miR-785	------------------------------------------------------------------------------TAAGTGAATTGTTTTGTGTAGA--------------------------------	22	-
celegans	------------GCTCTTTTTCTCACCCATCAGCACAGAATTTTTCG-CTAACAGAAACCTC---AAAACA----ATGTAAGTGAATTGTTTTGTGTAGATGGTGGAAATG----AGC--------------
cbriggsae	TTGAAATGCGTTGCTC--TTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAA-TACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAG
cjaponica	------------GCTCTCTTTT-----CACTAACCCAGAACAACTCG-CTAACACGAACACTGAGAAA-----TGATGTAAGTGAA-TGTTCTGTGTTGGTGGAGATGATG----AGT--------------
cbrenneri	------------GCTC-TTTTCTCTCCCGTTAGCACAAAATATTTTA-CTTACACATAAC-----AAAACATATGATGTAAGTGAA-TACTTTGTGTTAATGGAAAAAGGGC--------------------
ppacificus	ACTGTTGGAAGTGCTC-----------AATAAACTGAAAC--------CTGGCATGAAC------AATTCA--------AAGTGAATCGCTTCCAGCAGA--------------------------------
cremanei	-------AAACCGCTC--TTTTTTGTCCGTCAGCGCAGAATTTTTTCGCTTACACGAGT------AATGTAAACGATGTAAGTGAA-TATTCTGTGTCGATGGGTATAAAAAGATAATGATGGTTT------
	**** * * * * ***** * *
celegans	((((..((((.((((.(((.(((((((((..(((( ((.(((........ ...... .))).))))))..))))))))).))))))))))).) )))	1.000 -36.26
cbriggsae	....((((((((((.. ((((((((((((((((((((((((.(((.((((((((((...............))).)))))))))) ))))))))))))))))).....))).)))).))))))))))....	1.000 -52.06
cjaponica	(((((((((( (((((((.(((((((..((( ((.(((.............. ...))).))))). ))))))).))))))))))).)).) )))	0.949 -32.33
cbrenneri	(((( ((((.....(((((((((((((.((.(((( ((((((((((.. ......)))).)))))))))) )).))))))))))))).))))))))	1.000 -35.20
ppacificus	.((((((((((((.(( (......((((.. .((.......) ).)))) ...)))..)))))))))))).	0.543 -20.80
cremanei	((((((.(( (((((..((((((.(((((((((...((((((((((((... ........)).)))))))))) .))))))))).))))))...)))))))......))))))	0.999 -39.50

celegans	chromosome:X:3004660:3004753:1	intergenic ## {MIR: cel-mir-785}
cbriggsae	chromosome:chrX:7891054:7891182:1	Same_strand\|Intronic_coding\|NM_178660 ## Opposite_strand\|Intronic_coding\|NM_133381 ## {MIR: cbr-mir-785}
cjaponica	chromosome:chrUn:20283862:20283951:-1	intergenic
cbrenneri	chromosome:chrUn:1355192:1355283:1	intergenic
ppacificus	chromosome:chrUn:73925300:73925433:1	intergenic ## {Repeats: AT_rich 1 47 1 class=Low_complexity}
cremanei	chromosome:chrUn:4287759:4287868:-1	intergenic

miR-Intess™

cel-mir-785

block8221 (miRBase cel-mir-785) [miRNAknown_randfoldOK]